Wall clock time and date at job start Fri Apr 10 2020 14:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.27639 * 125.77197 * 2 1 4 4 O 1.41385 * 113.17474 * 180.29995 * 3 2 1 5 5 C 1.44249 * 107.50539 * 342.63087 * 4 3 2 6 6 H 1.08994 * 111.01600 * 143.17301 * 5 4 3 7 7 C 1.53007 * 111.00895 * 267.04273 * 5 4 3 8 8 N 1.46497 * 109.46925 * 298.54629 * 7 5 4 9 9 S 1.65606 * 119.99742 * 165.00336 * 8 7 5 10 10 O 1.42094 * 104.27401 * 181.07035 * 9 8 7 11 11 O 1.42099 * 104.27562 * 308.92403 * 9 8 7 12 12 C 1.81395 * 104.45017 * 64.99801 * 9 8 7 13 13 C 1.53005 * 109.46827 * 180.02562 * 12 9 8 14 14 C 1.53002 * 109.46869 * 180.02562 * 13 12 9 15 15 C 1.50701 * 109.46973 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99865 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99784 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00395 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47103 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46990 * 120.00149 * 19 17 15 22 22 H 1.48499 * 109.46934 * 240.00009 * 19 17 15 23 23 C 1.51688 * 125.76846 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46750 * 0.02841 * 1 2 3 25 25 H 1.09000 * 109.46808 * 120.02476 * 1 2 3 26 26 H 1.08990 * 109.47402 * 240.02715 * 1 2 3 27 27 H 1.08998 * 109.47428 * 58.54815 * 7 5 4 28 28 H 1.09007 * 109.46871 * 178.54618 * 7 5 4 29 29 H 0.96993 * 120.00372 * 344.99572 * 8 7 5 30 30 H 1.09007 * 109.47245 * 299.99862 * 12 9 8 31 31 H 1.08999 * 109.47087 * 60.00122 * 12 9 8 32 32 H 1.09001 * 109.47125 * 299.99475 * 13 12 9 33 33 H 1.08999 * 109.47346 * 60.00086 * 13 12 9 34 34 H 1.09007 * 109.47083 * 299.99594 * 14 13 12 35 35 H 1.08999 * 109.47208 * 59.99828 * 14 13 12 36 36 H 0.96996 * 120.00294 * 179.97438 * 18 17 15 37 37 H 1.09000 * 110.80225 * 313.55020 * 23 2 1 38 38 H 1.08999 * 110.80460 * 76.85914 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0356 0.0000 4 8 3.6329 0.7273 -0.0068 5 6 3.7717 -0.6500 0.3991 6 1 4.5758 -1.1401 -0.1497 7 6 3.9964 -0.7569 1.9088 8 7 5.2360 -0.0640 2.2683 9 16 5.5475 0.3077 3.8518 10 8 6.7973 0.9825 3.8139 11 8 4.3706 0.9697 4.2943 12 6 5.7179 -1.3024 4.6696 13 6 6.0104 -1.0907 6.1565 14 6 6.1548 -2.4488 6.8462 15 6 6.4435 -2.2404 8.3105 16 1 6.5171 -1.2393 8.7092 17 6 6.6137 -3.3276 9.1412 18 7 6.5236 -4.5466 8.6558 19 14 6.9723 -3.0691 10.9562 20 1 7.0236 -1.6141 11.2483 21 1 5.9002 -3.6999 11.7672 22 1 8.2789 -3.6880 11.2956 23 6 2.3936 -1.2308 0.0006 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3633 -0.5142 -0.8898 26 1 -0.3634 -0.5134 0.8901 27 1 3.1585 -0.2987 2.4342 28 1 4.0719 -1.8070 2.1913 29 1 5.8744 0.1769 1.5790 30 1 4.7916 -1.8663 4.5586 31 1 6.5377 -1.8569 4.2130 32 1 6.9365 -0.5269 6.2679 33 1 5.1903 -0.5364 6.6128 34 1 5.2288 -3.0132 6.7348 35 1 6.9751 -3.0028 6.3897 36 1 6.6437 -5.3114 9.2401 37 1 2.0502 -1.9549 0.7394 38 1 2.4319 -1.6807 -0.9915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867347403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:12 Heat of formation + Delta-G solvation = -71.336858 kcal Electronic energy + Delta-G solvation = -20886.820534 eV Core-core repulsion = 17472.067599 eV Total energy + Delta-G solvation = -3414.752935 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64383 -36.89891 -35.80032 -35.55931 -34.69362 -34.00872 -32.20751 -31.17710 -28.79894 -27.83376 -26.26764 -23.75393 -22.32445 -20.68058 -20.12214 -19.20636 -17.55394 -17.27653 -16.71460 -16.49229 -15.83225 -15.60813 -15.38954 -14.85897 -14.50495 -14.28840 -14.13593 -13.54077 -13.33705 -13.11173 -12.93213 -12.61990 -12.36154 -12.29033 -11.94335 -11.92288 -11.79428 -11.75448 -11.57327 -11.24764 -10.95904 -10.95081 -10.85405 -10.43625 -9.97921 -9.81280 -9.70649 -9.33972 -9.09730 -8.43163 -6.08002 -4.10883 0.44715 1.50047 2.66522 2.94036 3.28139 3.35750 3.40986 3.69678 3.89919 4.06735 4.13625 4.18214 4.41041 4.42185 4.64578 4.84713 4.97535 5.02528 5.05050 5.08168 5.13771 5.16453 5.28671 5.35572 5.40107 5.63081 5.72368 5.85970 6.24696 6.42320 6.83726 6.87039 7.13172 7.54378 7.64026 7.90218 8.30757 8.95609 9.54078 11.03276 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.026419 B = 0.003100 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.576718 B = 9030.701986 C = 9507.057635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.077 3.923 3 N -0.288 5.288 4 O -0.189 6.189 5 C 0.035 3.965 6 H 0.124 0.876 7 C 0.101 3.899 8 N -1.118 6.118 9 S 2.601 3.399 10 O -0.961 6.961 11 O -0.961 6.961 12 C -0.609 4.609 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.148 4.148 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.417 0.583 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.020 0.980 35 H 0.021 0.979 36 H 0.261 0.739 37 H 0.108 0.892 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.512 2.957 -20.585 23.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 N -0.031 5.031 4 O -0.207 6.207 5 C -0.026 4.026 6 H 0.141 0.859 7 C -0.026 4.026 8 N -0.876 5.876 9 S 2.697 3.303 10 O -0.951 6.951 11 O -0.950 6.950 12 C -0.741 4.741 13 C -0.146 4.146 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.189 4.189 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.251 0.749 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.341 4.847 -20.117 23.133 hybrid contribution 0.595 -1.707 0.668 1.927 sum -9.746 3.140 -19.449 21.980 Atomic orbital electron populations 1.20441 0.85250 1.04789 1.04072 1.26326 0.98298 0.92144 0.94893 1.77954 0.89352 1.23287 1.12491 1.91330 1.15713 1.26855 1.86791 1.23925 0.98601 0.84622 0.95405 0.85874 1.21699 0.87736 0.97698 0.95461 1.55543 1.28900 1.76071 1.27095 1.05312 0.74161 0.77669 0.73140 1.93581 1.44411 1.71942 1.85165 1.93570 1.49194 1.71695 1.80584 1.30559 1.11091 1.21548 1.10886 1.21510 1.01521 1.03798 0.87756 1.19068 0.97564 0.89377 0.94765 1.21299 1.48632 0.92912 0.93534 0.92290 1.25022 0.95239 0.95166 0.98971 1.69963 1.50142 0.97782 1.35603 0.86496 0.77910 0.78441 0.84962 1.19575 1.20934 1.20933 1.23141 0.91629 0.98860 1.05230 0.89886 0.89292 0.89082 0.89873 0.89949 0.74869 0.85655 0.85225 0.91500 0.91534 0.96151 0.96112 0.92953 0.87326 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 10.49 36.00 0.38 -0.01 16 2 C 0.08 0.60 7.45 -78.58 -0.59 0.02 16 3 N -0.29 -3.45 12.45 35.64 0.44 -3.00 16 4 O -0.19 -2.33 12.17 -11.37 -0.14 -2.47 16 5 C 0.03 0.28 3.91 -25.79 -0.10 0.18 16 6 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 7 C 0.10 0.95 5.85 -4.04 -0.02 0.93 16 8 N -1.12 -12.69 5.82 -10.61 -0.06 -12.75 16 9 S 2.60 39.44 5.46 -107.50 -0.59 38.85 16 10 O -0.96 -17.52 18.08 -57.54 -1.04 -18.56 16 11 O -0.96 -17.73 17.50 -57.54 -1.01 -18.73 16 12 C -0.61 -9.19 6.07 37.16 0.23 -8.97 16 13 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 14 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 15 C -0.53 -14.77 9.11 -34.44 -0.31 -15.09 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 19 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.15 -0.83 6.62 -26.46 -0.18 -1.00 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.08 0.91 7.69 -51.93 -0.40 0.51 16 28 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.42 4.14 8.62 -34.47 -0.30 3.84 16 30 H 0.13 1.63 8.14 -51.92 -0.42 1.20 16 31 H 0.13 1.73 8.14 -51.92 -0.42 1.31 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.11 0.39 7.91 -51.93 -0.41 -0.02 16 38 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -38.27 338.69 -8.26 -46.53 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.72 Total: -1.73 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -0.97 Total: -24.07 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 1.12 Total: -41.43 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -2.19 Total: -39.77 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 39.44 SS G_CDS: -0.59 Total: 38.85 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -38.27 -8.26 -46.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867347403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.809 kcal (2) G-P(sol) polarization free energy of solvation -38.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds