Wall clock time and date at job start Fri Apr 10 2020 14:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.27639 * 125.77197 * 2 1 4 4 O 1.41385 * 113.17474 * 180.29995 * 3 2 1 5 5 C 1.44249 * 107.50539 * 342.63087 * 4 3 2 6 6 H 1.08994 * 111.01600 * 143.17301 * 5 4 3 7 7 C 1.53007 * 111.00895 * 267.04273 * 5 4 3 8 8 N 1.46497 * 109.46925 * 298.54629 * 7 5 4 9 9 S 1.65606 * 119.99742 * 165.00336 * 8 7 5 10 10 O 1.42094 * 104.27401 * 181.07035 * 9 8 7 11 11 O 1.42099 * 104.27562 * 308.92403 * 9 8 7 12 12 C 1.81395 * 104.45017 * 64.99801 * 9 8 7 13 13 C 1.53005 * 109.46827 * 180.02562 * 12 9 8 14 14 C 1.53002 * 109.46869 * 180.02562 * 13 12 9 15 15 C 1.50701 * 109.46973 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99865 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99784 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00395 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47103 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46990 * 120.00149 * 19 17 15 22 22 H 1.48499 * 109.46934 * 240.00009 * 19 17 15 23 23 C 1.51688 * 125.76846 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46750 * 0.02841 * 1 2 3 25 25 H 1.09000 * 109.46808 * 120.02476 * 1 2 3 26 26 H 1.08990 * 109.47402 * 240.02715 * 1 2 3 27 27 H 1.08998 * 109.47428 * 58.54815 * 7 5 4 28 28 H 1.09007 * 109.46871 * 178.54618 * 7 5 4 29 29 H 0.96993 * 120.00372 * 344.99572 * 8 7 5 30 30 H 1.09007 * 109.47245 * 299.99862 * 12 9 8 31 31 H 1.08999 * 109.47087 * 60.00122 * 12 9 8 32 32 H 1.09001 * 109.47125 * 299.99475 * 13 12 9 33 33 H 1.08999 * 109.47346 * 60.00086 * 13 12 9 34 34 H 1.09007 * 109.47083 * 299.99594 * 14 13 12 35 35 H 1.08999 * 109.47208 * 59.99828 * 14 13 12 36 36 H 0.96996 * 120.00294 * 179.97438 * 18 17 15 37 37 H 1.09000 * 110.80225 * 313.55020 * 23 2 1 38 38 H 1.08999 * 110.80460 * 76.85914 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0356 0.0000 4 8 3.6329 0.7273 -0.0068 5 6 3.7717 -0.6500 0.3991 6 1 4.5758 -1.1401 -0.1497 7 6 3.9964 -0.7569 1.9088 8 7 5.2360 -0.0640 2.2683 9 16 5.5475 0.3077 3.8518 10 8 6.7973 0.9825 3.8139 11 8 4.3706 0.9697 4.2943 12 6 5.7179 -1.3024 4.6696 13 6 6.0104 -1.0907 6.1565 14 6 6.1548 -2.4488 6.8462 15 6 6.4435 -2.2404 8.3105 16 1 6.5171 -1.2393 8.7092 17 6 6.6137 -3.3276 9.1412 18 7 6.5236 -4.5466 8.6558 19 14 6.9723 -3.0691 10.9562 20 1 7.0236 -1.6141 11.2483 21 1 5.9002 -3.6999 11.7672 22 1 8.2789 -3.6880 11.2956 23 6 2.3936 -1.2308 0.0006 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3633 -0.5142 -0.8898 26 1 -0.3634 -0.5134 0.8901 27 1 3.1585 -0.2987 2.4342 28 1 4.0719 -1.8070 2.1913 29 1 5.8744 0.1769 1.5790 30 1 4.7916 -1.8663 4.5586 31 1 6.5377 -1.8569 4.2130 32 1 6.9365 -0.5269 6.2679 33 1 5.1903 -0.5364 6.6128 34 1 5.2288 -3.0132 6.7348 35 1 6.9751 -3.0028 6.3897 36 1 6.6437 -5.3114 9.2401 37 1 2.0502 -1.9549 0.7394 38 1 2.4319 -1.6807 -0.9915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867347403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:06:12 Heat of formation + Delta-G solvation = -101.714305 kcal Electronic energy + Delta-G solvation = -20888.137799 eV Core-core repulsion = 17472.067599 eV Total energy + Delta-G solvation = -3416.070200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.25606 -38.24309 -37.10791 -36.47906 -36.43267 -34.63655 -34.17304 -31.82522 -29.66733 -29.26166 -26.94629 -25.63919 -22.96532 -22.40605 -20.71521 -20.37989 -18.76177 -18.55546 -17.94930 -17.48315 -17.17118 -16.62305 -16.45940 -16.21250 -15.82992 -15.37608 -14.86465 -14.52518 -14.26881 -14.01581 -13.78739 -13.65462 -13.50509 -13.46483 -13.25353 -13.19820 -13.12558 -12.99236 -12.77995 -12.61719 -12.40399 -12.33320 -12.15787 -11.76291 -11.53751 -11.38177 -11.14451 -10.58098 -10.51098 -10.32045 -8.23494 -6.33952 -0.78905 0.94441 1.39096 1.40274 1.53202 1.70890 2.24253 2.39442 2.73603 3.10209 3.16725 3.23797 3.45920 3.59820 3.67298 3.75414 3.92351 4.07761 4.33064 4.37964 4.49812 4.61032 4.65358 4.69656 4.76929 4.83794 4.84878 4.93108 4.99366 5.05759 5.33927 5.45177 5.62915 5.79132 6.01848 6.19691 6.54433 6.81503 7.35364 8.88055 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.026419 B = 0.003100 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.576718 B = 9030.701986 C = 9507.057635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.089 3.911 3 N -0.350 5.350 4 O -0.227 6.227 5 C 0.027 3.973 6 H 0.148 0.852 7 C 0.089 3.911 8 N -1.107 6.107 9 S 2.626 3.374 10 O -0.995 6.995 11 O -0.996 6.996 12 C -0.601 4.601 13 C -0.109 4.109 14 C 0.032 3.968 15 C -0.553 4.553 16 H 0.058 0.942 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.961 3.039 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.143 4.143 24 H 0.071 0.929 25 H 0.117 0.883 26 H 0.109 0.891 27 H 0.064 0.936 28 H 0.120 0.880 29 H 0.425 0.575 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.007 0.993 35 H 0.005 0.995 36 H 0.265 0.735 37 H 0.135 0.865 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.323 1.615 -21.230 24.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 N -0.095 5.095 4 O -0.243 6.243 5 C -0.033 4.033 6 H 0.165 0.835 7 C -0.037 4.037 8 N -0.868 5.868 9 S 2.722 3.278 10 O -0.985 6.985 11 O -0.986 6.986 12 C -0.733 4.733 13 C -0.148 4.148 14 C -0.006 4.006 15 C -0.591 4.591 16 H 0.076 0.924 17 C -0.194 4.194 18 N -0.568 5.568 19 Si 0.786 3.214 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.182 4.182 24 H 0.090 0.910 25 H 0.135 0.865 26 H 0.127 0.873 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.262 0.738 30 H 0.169 0.831 31 H 0.170 0.830 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.025 0.975 35 H 0.023 0.977 36 H 0.074 0.926 37 H 0.153 0.847 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.137 3.512 -20.768 23.826 hybrid contribution 0.767 -1.354 0.801 1.750 sum -10.370 2.158 -19.968 22.603 Atomic orbital electron populations 1.20654 0.83034 1.04846 1.06194 1.27078 0.99675 0.92459 0.91174 1.77961 0.89537 1.25491 1.16539 1.91273 1.16552 1.29108 1.87375 1.24210 1.00993 0.83574 0.94503 0.83489 1.22066 0.85888 0.99151 0.96623 1.55133 1.29921 1.76267 1.25469 1.04307 0.72651 0.77131 0.73698 1.93528 1.45855 1.73093 1.86041 1.93525 1.50425 1.72820 1.81833 1.30445 1.13346 1.22179 1.07341 1.21336 1.01581 1.00949 0.90923 1.18960 0.96069 0.91599 0.93987 1.21769 1.48821 0.93057 0.95437 0.92410 1.25896 0.94943 0.94897 1.03659 1.70060 1.50835 0.98570 1.37337 0.85454 0.78001 0.78598 0.79362 1.19007 1.20111 1.20227 1.23247 0.89360 0.98199 1.07418 0.90970 0.86516 0.87279 0.91745 0.86259 0.73848 0.83101 0.83045 0.91771 0.91657 0.97472 0.97674 0.92594 0.84667 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.49 71.23 0.75 0.16 16 2 C 0.09 1.24 7.45 46.90 0.35 1.59 16 3 N -0.35 -8.36 12.45 -40.62 -0.51 -8.86 16 4 O -0.23 -5.57 12.17 -38.30 -0.47 -6.04 16 5 C 0.03 0.38 3.91 31.20 0.12 0.50 16 6 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 7 C 0.09 1.48 5.85 86.38 0.50 1.99 16 8 N -1.11 -23.65 5.82 -187.48 -1.09 -24.74 16 9 S 2.63 78.03 5.46 -56.49 -0.31 77.72 16 10 O -0.99 -36.23 18.08 -127.65 -2.31 -38.54 16 11 O -1.00 -36.85 17.50 -127.65 -2.23 -39.09 16 12 C -0.60 -17.23 6.07 71.98 0.44 -16.80 16 13 C -0.11 -4.37 5.16 30.60 0.16 -4.21 16 14 C 0.03 1.63 4.97 29.85 0.15 1.77 16 15 C -0.55 -31.27 9.11 25.60 0.23 -31.03 16 16 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 17 C 0.00 0.25 5.46 84.65 0.46 0.71 16 18 N -0.93 -54.79 13.29 21.45 0.28 -54.50 16 19 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 C -0.14 -1.14 6.62 30.77 0.20 -0.93 16 24 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 25 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.06 1.33 7.69 -2.39 -0.02 1.31 16 28 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.43 7.96 8.62 -96.75 -0.83 7.12 16 30 H 0.15 3.54 8.14 -2.39 -0.02 3.52 16 31 H 0.15 3.70 8.14 -2.39 -0.02 3.68 16 32 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 35 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.14 0.37 7.91 -2.39 -0.02 0.36 16 38 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -84.91 338.69 -1.01 -85.92 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.22 Total: 8.39 kcal Atomic # 6 Polarization: -49.61 SS G_CDS: 3.37 Total: -46.24 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -1.31 Total: -88.11 kcal Atomic # 8 Polarization: -78.66 SS G_CDS: -5.01 Total: -83.66 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 78.03 SS G_CDS: -0.31 Total: 77.72 kcal Total: -84.91 -1.01 -85.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867347403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.789 kcal (2) G-P(sol) polarization free energy of solvation -84.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds