Wall clock time and date at job start Fri Apr 10 2020 14:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 120.00038 * 2 1 4 4 N 1.34773 * 119.99994 * 180.02562 * 2 1 3 5 5 C 1.46505 * 119.99982 * 185.35161 * 4 2 1 6 6 C 1.52991 * 109.47029 * 84.94896 * 5 4 2 7 7 C 1.50696 * 109.47182 * 179.97438 * 6 5 4 8 8 C 1.38242 * 120.00053 * 90.00030 * 7 6 5 9 9 C 1.38233 * 120.00255 * 179.97438 * 8 7 6 10 10 C 1.38238 * 119.99892 * 359.97438 * 9 8 7 11 11 C 1.38244 * 119.99899 * 0.27758 * 10 9 8 12 12 C 1.38230 * 120.00340 * 269.97701 * 7 6 5 13 13 C 1.46501 * 119.99841 * 5.35396 * 4 2 1 14 14 C 1.50697 * 109.46895 * 275.46376 * 13 4 2 15 15 O 1.21287 * 120.00103 * 359.97438 * 14 13 4 16 16 N 1.34775 * 119.99820 * 180.02562 * 14 13 4 17 17 C 1.37099 * 120.00003 * 180.02562 * 16 14 13 18 18 H 1.07994 * 119.99908 * 359.97438 * 17 16 14 19 19 C 1.38955 * 119.99883 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00121 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99768 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47270 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47042 * 119.99907 * 21 19 17 24 24 H 1.48501 * 109.46709 * 239.99687 * 21 19 17 25 25 H 1.09000 * 109.47089 * 175.08932 * 1 2 3 26 26 H 1.08995 * 109.47311 * 295.09650 * 1 2 3 27 27 H 1.09005 * 109.46735 * 55.09235 * 1 2 3 28 28 H 1.08996 * 109.47045 * 324.94771 * 5 4 2 29 29 H 1.09003 * 109.47010 * 204.94889 * 5 4 2 30 30 H 1.09001 * 109.47747 * 59.99874 * 6 5 4 31 31 H 1.09003 * 109.47219 * 299.99865 * 6 5 4 32 32 H 1.08001 * 119.99962 * 359.97438 * 8 7 6 33 33 H 1.07998 * 120.00182 * 180.02562 * 9 8 7 34 34 H 1.07999 * 120.00181 * 179.97438 * 10 9 8 35 35 H 1.07995 * 119.99762 * 179.72393 * 11 10 9 36 36 H 1.08008 * 119.99888 * 359.97438 * 12 7 6 37 37 H 1.08998 * 109.47201 * 35.46567 * 13 4 2 38 38 H 1.09007 * 109.46532 * 155.46210 * 13 4 2 39 39 H 0.97006 * 120.00173 * 359.97438 * 16 14 13 40 40 H 0.97001 * 120.00285 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6411 -1.1700 0.1178 6 6 4.0331 -1.1118 1.5955 7 6 5.5351 -1.1153 1.7173 8 6 6.2309 0.0793 1.7242 9 6 7.6086 0.0761 1.8365 10 6 8.2907 -1.1216 1.9423 11 6 7.5954 -2.3164 1.9301 12 6 6.2173 -2.3129 1.8226 13 6 1.4531 -2.4331 -0.1195 14 6 0.9724 -2.8659 1.2416 15 8 1.2144 -2.1843 2.2152 16 7 0.2746 -4.0109 1.3771 17 6 -0.1632 -4.4044 2.6153 18 1 0.0515 -3.7971 3.4821 19 6 -0.8832 -5.5847 2.7549 20 7 -1.1448 -6.3234 1.7001 21 14 -1.4790 -6.1212 4.4420 22 1 -1.0566 -5.1228 5.4568 23 1 -2.9604 -6.2236 4.4343 24 1 -0.8932 -7.4443 4.7762 25 1 -0.3633 -1.0239 -0.0880 26 1 -0.3633 0.4359 0.9306 27 1 -0.3633 0.5881 -0.8428 28 1 4.0493 -0.3026 -0.4008 29 1 4.0400 -2.0810 -0.3283 30 1 3.6249 -1.9791 2.1143 31 1 3.6342 -0.2007 2.0416 32 1 5.6980 1.0150 1.6419 33 1 8.1521 1.0094 1.8423 34 1 9.3672 -1.1241 2.0296 35 1 8.1287 -3.2522 2.0084 36 1 5.6737 -3.2462 1.8179 37 1 0.5976 -2.2995 -0.7815 38 1 2.1151 -3.1954 -0.5305 39 1 0.0814 -4.5562 0.5984 40 1 -1.6471 -7.1475 1.7975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090500148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:44 Heat of formation + Delta-G solvation = -50.935543 kcal Electronic energy + Delta-G solvation = -22811.541444 eV Core-core repulsion = 19398.062320 eV Total energy + Delta-G solvation = -3413.479124 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.91298 -39.03950 -37.97547 -35.40910 -33.97440 -33.11755 -31.34791 -30.81703 -30.06762 -28.33510 -27.01036 -24.54507 -23.51746 -22.48357 -20.88586 -19.99192 -18.66082 -17.93044 -16.90521 -16.66391 -16.20687 -15.91417 -15.06951 -15.01311 -14.76969 -14.35391 -13.94491 -13.85544 -13.42263 -13.27813 -13.18466 -13.00298 -12.58093 -12.50800 -12.14695 -12.03094 -11.65425 -11.64235 -11.57087 -11.16677 -11.06650 -10.91916 -10.48781 -10.41356 -10.31967 -9.62039 -9.51067 -9.13307 -8.86077 -8.56988 -8.08279 -8.06546 -6.52098 -3.93193 1.41843 1.46207 2.91001 3.09161 3.21730 3.26890 3.31051 3.73261 3.86114 4.10286 4.78277 4.91284 4.95446 5.00811 5.07555 5.10792 5.21820 5.33605 5.44351 5.51172 5.53320 5.59931 5.64356 5.65208 5.77336 5.79468 5.98303 6.05769 6.11669 6.18952 6.24095 6.50672 6.55276 6.55805 6.79755 6.82610 7.08958 7.46032 7.62063 7.94473 8.44422 8.50846 9.07208 9.40898 9.90910 10.64908 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.004339 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.362010 B = 6452.160020 C = 7849.875537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.528 3.472 3 O -0.558 6.558 4 N -0.589 5.589 5 C 0.130 3.870 6 C -0.096 4.096 7 C -0.070 4.070 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.131 4.131 11 C -0.121 4.121 12 C -0.116 4.116 13 C 0.094 3.906 14 C 0.416 3.584 15 O -0.579 6.579 16 N -0.558 5.558 17 C -0.300 4.300 18 H 0.104 0.896 19 C 0.025 3.975 20 N -0.898 5.898 21 Si 0.928 3.072 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.393 0.607 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.523 5.808 -5.372 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.317 3.683 3 O -0.437 6.437 4 N -0.321 5.321 5 C 0.007 3.993 6 C -0.134 4.134 7 C -0.071 4.071 8 C -0.134 4.134 9 C -0.140 4.140 10 C -0.150 4.150 11 C -0.139 4.139 12 C -0.134 4.134 13 C -0.034 4.034 14 C 0.200 3.800 15 O -0.463 6.463 16 N -0.194 5.194 17 C -0.430 4.430 18 H 0.122 0.878 19 C -0.177 4.177 20 N -0.539 5.539 21 Si 0.755 3.245 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.207 1.207 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.226 0.774 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.888 6.639 -4.743 13.606 hybrid contribution -0.516 -0.953 0.480 1.185 sum 10.372 5.686 -4.264 12.574 Atomic orbital electron populations 1.21925 0.92077 1.04620 1.04664 1.20640 0.90544 0.82794 0.74281 1.90645 1.70925 1.31090 1.51061 1.47512 1.06691 1.05629 1.72224 1.21353 0.79469 1.02474 0.95990 1.21003 0.89917 1.05072 0.97433 1.19998 0.95924 0.93047 0.98138 1.21153 0.94137 0.97978 1.00135 1.21117 0.94408 0.97900 1.00555 1.21091 0.99566 0.92743 1.01554 1.21129 0.94348 0.97958 1.00437 1.21155 0.94242 0.97912 1.00085 1.21498 0.98018 0.86386 0.97460 1.20334 0.85003 0.84100 0.90573 1.90556 1.60855 1.55163 1.39714 1.41897 1.47412 1.19721 1.10375 1.19743 1.31069 1.05589 0.86558 0.87824 1.25261 0.97196 0.96087 0.99152 1.69604 1.40181 1.14879 1.29257 0.85821 0.78331 0.78606 0.81746 1.19214 1.20677 1.20704 0.90144 0.88640 0.89524 0.90275 0.90758 0.89143 0.90616 0.86026 0.86388 0.86515 0.86296 0.85925 0.88657 0.88592 0.77406 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 9.89 36.01 0.36 -2.19 16 2 C 0.53 9.19 7.55 -10.99 -0.08 9.11 16 3 O -0.56 -11.18 16.73 5.56 0.09 -11.09 16 4 N -0.59 -9.53 2.03 -175.06 -0.36 -9.88 16 5 C 0.13 1.95 5.43 -4.04 -0.02 1.93 16 6 C -0.10 -1.57 5.27 -27.89 -0.15 -1.71 16 7 C -0.07 -1.02 5.13 -104.63 -0.54 -1.55 16 8 C -0.12 -1.56 9.70 -39.58 -0.38 -1.94 16 9 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 10 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 11 C -0.12 -1.42 10.05 -39.58 -0.40 -1.81 16 12 C -0.12 -1.55 9.70 -39.59 -0.38 -1.94 16 13 C 0.09 1.44 5.55 -5.19 -0.03 1.41 16 14 C 0.42 8.65 7.21 -10.99 -0.08 8.57 16 15 O -0.58 -14.10 14.37 5.55 0.08 -14.02 16 16 N -0.56 -12.75 5.29 -10.97 -0.06 -12.80 16 17 C -0.30 -7.81 9.68 -14.93 -0.14 -7.95 16 18 H 0.10 2.87 7.16 -52.49 -0.38 2.50 16 19 C 0.03 0.64 5.50 -17.47 -0.10 0.54 16 20 N -0.90 -23.08 13.05 55.50 0.72 -22.36 16 21 Si 0.93 20.18 29.55 -169.99 -5.02 15.16 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H 0.08 1.15 5.25 -51.93 -0.27 0.87 16 26 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.20 7.51 -51.93 -0.39 0.81 16 29 H 0.07 0.96 7.79 -51.93 -0.40 0.56 16 30 H 0.09 1.70 6.94 -51.93 -0.36 1.34 16 31 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 32 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.10 1.23 6.45 -51.93 -0.34 0.89 16 38 H 0.10 1.25 7.79 -51.93 -0.40 0.84 16 39 H 0.39 8.53 7.90 -40.82 -0.32 8.20 16 40 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -31.06 342.83 -7.50 -38.55 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -5.38 Total: 12.49 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.74 Total: -1.21 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.31 Total: -45.04 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: 0.17 Total: -25.11 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.06 -7.50 -38.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090500148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.382 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds