Wall clock time and date at job start Fri Apr 10 2020 14:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36941 * 119.99639 * 2 1 4 4 H 1.08001 * 119.99492 * 200.36220 * 3 2 1 5 5 C 1.38817 * 119.99861 * 20.36320 * 3 2 1 6 6 N 1.31616 * 119.99912 * 14.98769 * 5 3 2 7 7 Si 1.86795 * 119.99701 * 194.98378 * 5 3 2 8 8 H 1.48508 * 109.46868 * 85.00404 * 7 5 3 9 9 H 1.48493 * 109.47304 * 205.00428 * 7 5 3 10 10 H 1.48498 * 109.47216 * 325.00662 * 7 5 3 11 11 C 1.46498 * 120.00022 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.47080 * 269.99520 * 11 2 1 13 13 C 1.50694 * 109.47053 * 180.02562 * 12 11 2 14 14 O 1.21288 * 120.00231 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00149 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00192 * 180.02562 * 15 13 12 17 17 C 1.50706 * 109.47193 * 179.97438 * 16 15 13 18 18 O 1.21252 * 119.99577 * 359.97438 * 17 16 15 19 19 C 1.47164 * 119.99949 * 179.97438 * 17 16 15 20 20 C 1.39861 * 120.16675 * 180.02562 * 19 17 16 21 21 C 1.37885 * 119.82119 * 179.97438 * 20 19 17 22 22 C 1.38405 * 120.17257 * 359.97438 * 21 20 19 23 23 C 1.38405 * 120.35075 * 0.03750 * 22 21 20 24 24 C 1.37889 * 120.16984 * 359.96600 * 23 22 21 25 25 H 1.09000 * 109.46784 * 275.09105 * 1 2 3 26 26 H 1.08998 * 109.47283 * 35.09645 * 1 2 3 27 27 H 1.09003 * 109.46545 * 155.09840 * 1 2 3 28 28 H 0.96998 * 119.99543 * 179.97438 * 6 5 3 29 29 H 1.09004 * 109.46885 * 150.00154 * 11 2 1 30 30 H 1.08998 * 109.47328 * 30.00177 * 11 2 1 31 31 H 1.09002 * 109.46287 * 60.00321 * 12 11 2 32 32 H 1.08998 * 109.47065 * 300.00630 * 12 11 2 33 33 H 0.97007 * 119.99929 * 359.97438 * 15 13 12 34 34 H 1.08996 * 109.47243 * 59.99555 * 16 15 13 35 35 H 1.09005 * 109.47088 * 299.99224 * 16 15 13 36 36 H 1.07995 * 120.08775 * 359.69668 * 20 19 17 37 37 H 1.07994 * 119.91753 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.82811 * 180.02562 * 22 21 20 39 39 H 1.08001 * 119.91847 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.08453 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1791 1.2152 -0.3255 5 6 1.5206 2.3506 0.4183 6 7 0.3875 2.2835 1.0846 7 14 2.2823 4.0127 0.0358 8 1 1.8681 4.4461 -1.3229 9 1 1.8222 5.0099 1.0352 10 1 3.7623 3.9034 0.0907 11 6 2.1976 -1.2687 -0.0006 12 6 2.4527 -1.7110 1.4418 13 6 3.2067 -3.0157 1.4412 14 8 3.5106 -3.5401 0.3906 15 7 3.5434 -3.6000 2.6081 16 6 4.2769 -4.8681 2.6075 17 6 4.5281 -5.3038 4.0282 18 8 4.1337 -4.6220 4.9501 19 6 5.2520 -6.5567 4.2965 20 6 5.4866 -6.9647 5.6136 21 6 6.1651 -8.1401 5.8568 22 6 6.6132 -8.9158 4.8018 23 6 6.3852 -8.5187 3.4956 24 6 5.7082 -7.3459 3.2360 25 1 -0.3633 0.0912 1.0236 26 1 -0.3634 0.8408 -0.5908 27 1 -0.3632 -0.9322 -0.4327 28 1 -0.0519 3.0973 1.3772 29 1 3.1500 -1.1381 -0.5143 30 1 1.6086 -2.0281 -0.5147 31 1 1.5002 -1.8415 1.9555 32 1 3.0417 -0.9515 1.9559 33 1 3.3007 -3.1805 3.4484 34 1 5.2295 -4.7366 2.0944 35 1 3.6887 -5.6279 2.0928 36 1 5.1411 -6.3584 6.4378 37 1 6.3474 -8.4564 6.8732 38 1 7.1437 -9.8356 4.9987 39 1 6.7383 -9.1292 2.6776 40 1 5.5314 -7.0372 2.2163 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358034598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:12:24 Heat of formation + Delta-G solvation = -24.354987 kcal Electronic energy + Delta-G solvation = -21648.284659 eV Core-core repulsion = 18235.958154 eV Total energy + Delta-G solvation = -3412.326505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.58753 -39.28475 -38.43426 -35.62059 -34.35922 -32.18301 -31.82570 -31.41169 -29.78047 -27.91199 -25.82713 -24.45548 -23.54155 -22.76614 -20.78221 -20.35854 -19.77069 -17.74223 -16.98366 -16.67038 -16.25836 -15.92520 -15.80062 -15.25928 -14.77497 -14.72208 -14.51674 -14.08927 -13.92408 -13.56971 -13.34481 -13.09771 -12.87338 -12.59279 -12.25122 -12.15571 -11.85878 -11.54168 -11.15747 -10.82681 -10.75894 -10.48263 -10.18709 -10.09728 -9.88055 -9.76781 -9.50200 -9.47151 -9.44733 -9.04575 -8.50808 -6.76102 -5.69325 -3.12826 0.20989 0.91246 1.97844 2.98949 3.11236 3.35942 3.42113 3.48157 3.49226 3.71091 4.33087 4.47503 4.54345 4.57322 4.74998 4.92382 5.02024 5.11376 5.14561 5.34753 5.37118 5.45320 5.52702 5.83215 5.84706 5.92175 5.92679 5.97448 6.11985 6.39643 6.42675 6.49084 6.78599 6.81248 7.02751 7.06898 7.42472 7.66034 7.75671 7.85577 8.41596 8.49828 9.27597 9.91726 10.40003 11.35848 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033456 B = 0.002477 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.720623 B =11301.899707 C =11543.967997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.603 5.603 3 C -0.254 4.254 4 H 0.070 0.930 5 C -0.001 4.001 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.169 3.831 12 C -0.159 4.159 13 C 0.521 3.479 14 O -0.547 6.547 15 N -0.735 5.735 16 C 0.074 3.926 17 C 0.392 3.608 18 O -0.445 6.445 19 C -0.168 4.168 20 C -0.059 4.059 21 C -0.134 4.134 22 C -0.088 4.088 23 C -0.132 4.132 24 C -0.071 4.071 25 H 0.029 0.971 26 H 0.043 0.957 27 H -0.001 1.001 28 H 0.252 0.748 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.409 0.591 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.853 -22.977 8.457 26.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.324 5.324 3 C -0.383 4.383 4 H 0.088 0.912 5 C -0.199 4.199 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.041 3.959 12 C -0.202 4.202 13 C 0.309 3.691 14 O -0.424 6.424 15 N -0.392 5.392 16 C -0.051 4.051 17 C 0.269 3.731 18 O -0.319 6.319 19 C -0.169 4.169 20 C -0.077 4.077 21 C -0.152 4.152 22 C -0.106 4.106 23 C -0.150 4.150 24 C -0.089 4.089 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.017 0.983 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.246 0.754 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.724 -22.816 8.221 26.517 hybrid contribution 0.326 1.000 0.458 1.147 sum 11.050 -21.816 8.679 25.949 Atomic orbital electron populations 1.20826 0.82499 0.95636 0.99418 1.44088 1.02039 1.00824 1.85499 1.19261 0.97049 0.85009 1.37025 0.91220 1.24981 0.97914 0.98384 0.98608 1.70085 1.18873 1.26781 1.39602 0.86265 0.78638 0.83984 0.77621 1.21470 1.21817 1.20573 1.20589 0.96544 0.87772 0.90986 1.22595 1.00138 0.92081 1.05341 1.21461 0.78316 0.86866 0.82473 1.90641 1.54916 1.65539 1.31318 1.46075 1.59345 1.23299 1.10473 1.21505 0.99492 0.88916 0.95177 1.22611 0.75542 0.84080 0.90845 1.90537 1.41522 1.52616 1.47239 1.20377 1.04267 0.97570 0.94684 1.21460 0.94657 0.95546 0.96084 1.21186 0.99262 0.95077 0.99674 1.21481 0.97167 0.99136 0.92812 1.21194 0.99737 0.96948 0.97164 1.21565 0.94725 0.93670 0.98946 0.95273 0.93791 0.98257 0.93782 0.93059 0.93699 0.89568 0.88735 0.75388 0.87997 0.88014 0.84747 0.85274 0.85476 0.85120 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 9.02 59.85 0.54 4.59 16 2 N -0.60 -15.59 2.93 -181.10 -0.53 -16.12 16 3 C -0.25 -7.10 9.68 -15.06 -0.15 -7.24 16 4 H 0.07 1.92 7.86 -52.49 -0.41 1.50 16 5 C 0.00 -0.02 5.06 -17.43 -0.09 -0.11 16 6 N -0.91 -26.63 10.67 55.49 0.59 -26.03 16 7 Si 0.90 22.14 29.58 -169.99 -5.03 17.11 16 8 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.17 3.72 5.00 -4.04 -0.02 3.70 16 12 C -0.16 -2.99 6.02 -27.88 -0.17 -3.16 16 13 C 0.52 8.87 7.83 -10.99 -0.09 8.78 16 14 O -0.55 -10.63 15.98 5.55 0.09 -10.54 16 15 N -0.74 -10.16 5.53 -61.47 -0.34 -10.50 16 16 C 0.07 0.81 4.77 -5.19 -0.02 0.79 16 17 C 0.39 4.18 7.19 -30.68 -0.22 3.96 16 18 O -0.44 -5.90 15.66 5.58 0.09 -5.82 16 19 C -0.17 -1.50 5.87 -105.07 -0.62 -2.11 16 20 C -0.06 -0.50 9.60 -39.10 -0.38 -0.87 16 21 C -0.13 -0.87 10.03 -39.65 -0.40 -1.26 16 22 C -0.09 -0.50 10.04 -39.46 -0.40 -0.90 16 23 C -0.13 -0.79 10.03 -39.65 -0.40 -1.19 16 24 C -0.07 -0.50 9.47 -39.11 -0.37 -0.87 16 25 H 0.03 0.77 7.40 -51.93 -0.38 0.39 16 26 H 0.04 1.18 7.21 -51.93 -0.37 0.81 16 27 H 0.00 -0.02 7.83 -51.93 -0.41 -0.43 16 28 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.05 1.15 7.99 -51.93 -0.41 0.74 16 30 H 0.04 0.95 7.82 -51.93 -0.41 0.54 16 31 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 33 H 0.41 5.44 7.44 -40.82 -0.30 5.14 16 34 H 0.10 1.03 8.09 -51.93 -0.42 0.61 16 35 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 36 H 0.13 1.12 7.65 -52.49 -0.40 0.72 16 37 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 39 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 40 H 0.14 0.76 7.05 -52.49 -0.37 0.39 16 LS Contribution 344.46 15.07 5.19 5.19 Total: -1.00 -33.40 344.46 -8.27 -41.67 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.56 Total: 0.95 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -2.77 Total: 4.10 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.28 Total: -52.66 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.18 Total: -16.36 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.40 -8.27 -41.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358034598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.310 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds