Wall clock time and date at job start Fri Apr 10 2020 14:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36941 * 119.99639 * 2 1 4 4 H 1.08001 * 119.99492 * 200.36220 * 3 2 1 5 5 C 1.38817 * 119.99861 * 20.36320 * 3 2 1 6 6 N 1.31616 * 119.99912 * 14.98769 * 5 3 2 7 7 Si 1.86795 * 119.99701 * 194.98378 * 5 3 2 8 8 H 1.48508 * 109.46868 * 85.00404 * 7 5 3 9 9 H 1.48493 * 109.47304 * 205.00428 * 7 5 3 10 10 H 1.48498 * 109.47216 * 325.00662 * 7 5 3 11 11 C 1.46498 * 120.00022 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.47080 * 269.99520 * 11 2 1 13 13 C 1.50694 * 109.47053 * 180.02562 * 12 11 2 14 14 O 1.21288 * 120.00231 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00149 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00192 * 180.02562 * 15 13 12 17 17 C 1.50706 * 109.47193 * 179.97438 * 16 15 13 18 18 O 1.21252 * 119.99577 * 359.97438 * 17 16 15 19 19 C 1.47164 * 119.99949 * 179.97438 * 17 16 15 20 20 C 1.39861 * 120.16675 * 180.02562 * 19 17 16 21 21 C 1.37885 * 119.82119 * 179.97438 * 20 19 17 22 22 C 1.38405 * 120.17257 * 359.97438 * 21 20 19 23 23 C 1.38405 * 120.35075 * 0.03750 * 22 21 20 24 24 C 1.37889 * 120.16984 * 359.96600 * 23 22 21 25 25 H 1.09000 * 109.46784 * 275.09105 * 1 2 3 26 26 H 1.08998 * 109.47283 * 35.09645 * 1 2 3 27 27 H 1.09003 * 109.46545 * 155.09840 * 1 2 3 28 28 H 0.96998 * 119.99543 * 179.97438 * 6 5 3 29 29 H 1.09004 * 109.46885 * 150.00154 * 11 2 1 30 30 H 1.08998 * 109.47328 * 30.00177 * 11 2 1 31 31 H 1.09002 * 109.46287 * 60.00321 * 12 11 2 32 32 H 1.08998 * 109.47065 * 300.00630 * 12 11 2 33 33 H 0.97007 * 119.99929 * 359.97438 * 15 13 12 34 34 H 1.08996 * 109.47243 * 59.99555 * 16 15 13 35 35 H 1.09005 * 109.47088 * 299.99224 * 16 15 13 36 36 H 1.07995 * 120.08775 * 359.69668 * 20 19 17 37 37 H 1.07994 * 119.91753 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.82811 * 180.02562 * 22 21 20 39 39 H 1.08001 * 119.91847 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.08453 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1791 1.2152 -0.3255 5 6 1.5206 2.3506 0.4183 6 7 0.3875 2.2835 1.0846 7 14 2.2823 4.0127 0.0358 8 1 1.8681 4.4461 -1.3229 9 1 1.8222 5.0099 1.0352 10 1 3.7623 3.9034 0.0907 11 6 2.1976 -1.2687 -0.0006 12 6 2.4527 -1.7110 1.4418 13 6 3.2067 -3.0157 1.4412 14 8 3.5106 -3.5401 0.3906 15 7 3.5434 -3.6000 2.6081 16 6 4.2769 -4.8681 2.6075 17 6 4.5281 -5.3038 4.0282 18 8 4.1337 -4.6220 4.9501 19 6 5.2520 -6.5567 4.2965 20 6 5.4866 -6.9647 5.6136 21 6 6.1651 -8.1401 5.8568 22 6 6.6132 -8.9158 4.8018 23 6 6.3852 -8.5187 3.4956 24 6 5.7082 -7.3459 3.2360 25 1 -0.3633 0.0912 1.0236 26 1 -0.3634 0.8408 -0.5908 27 1 -0.3632 -0.9322 -0.4327 28 1 -0.0519 3.0973 1.3772 29 1 3.1500 -1.1381 -0.5143 30 1 1.6086 -2.0281 -0.5147 31 1 1.5002 -1.8415 1.9555 32 1 3.0417 -0.9515 1.9559 33 1 3.3007 -3.1805 3.4484 34 1 5.2295 -4.7366 2.0944 35 1 3.6887 -5.6279 2.0928 36 1 5.1411 -6.3584 6.4378 37 1 6.3474 -8.4564 6.8732 38 1 7.1437 -9.8356 4.9987 39 1 6.7383 -9.1292 2.6776 40 1 5.5314 -7.0372 2.2163 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358034598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:12:23 Heat of formation + Delta-G solvation = -45.265568 kcal Electronic energy + Delta-G solvation = -21649.191410 eV Core-core repulsion = 18235.958154 eV Total energy + Delta-G solvation = -3413.233255 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.46225 -40.45125 -39.18970 -37.55826 -35.56320 -33.84946 -32.77967 -31.92398 -31.46566 -29.02389 -27.91275 -25.89826 -24.51491 -23.37174 -22.48798 -21.42225 -20.90725 -18.84329 -18.53643 -17.94015 -17.31561 -17.01073 -16.72305 -16.48462 -16.11504 -16.07768 -15.43481 -15.22263 -15.14994 -14.76372 -14.50871 -14.29954 -14.14087 -13.95635 -13.58666 -13.36273 -13.02870 -12.77416 -12.64672 -12.64301 -12.41663 -12.04045 -12.02302 -11.94631 -11.62801 -11.09851 -10.89796 -10.63114 -10.26082 -9.97627 -9.96167 -8.84676 -7.83008 -5.29437 -0.42104 0.41406 1.27694 1.47705 1.49498 1.57553 1.60258 2.00455 2.52463 2.82383 2.82495 3.30670 3.62072 3.77327 3.99612 4.07102 4.09287 4.23766 4.24133 4.31796 4.34016 4.43714 4.46313 4.53485 4.78587 4.86971 4.87241 5.06196 5.07644 5.19355 5.28682 5.33218 5.37046 5.46057 5.50048 5.63510 5.71671 5.93474 6.26111 6.31838 6.40292 7.13248 7.16567 7.86267 8.29833 9.20623 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033456 B = 0.002477 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.720623 B =11301.899707 C =11543.967997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.619 5.619 3 C -0.265 4.265 4 H 0.070 0.930 5 C -0.053 4.053 6 N -0.936 5.936 7 Si 0.969 3.031 8 H -0.286 1.286 9 H -0.294 1.294 10 H -0.270 1.270 11 C 0.170 3.830 12 C -0.147 4.147 13 C 0.530 3.470 14 O -0.570 6.570 15 N -0.725 5.725 16 C 0.071 3.929 17 C 0.400 3.600 18 O -0.480 6.480 19 C -0.189 4.189 20 C -0.077 4.077 21 C -0.139 4.139 22 C -0.083 4.083 23 C -0.135 4.135 24 C -0.073 4.073 25 H 0.010 0.990 26 H 0.018 0.982 27 H 0.030 0.970 28 H 0.249 0.751 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.412 0.588 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.444 -24.955 8.351 29.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.342 5.342 3 C -0.395 4.395 4 H 0.088 0.912 5 C -0.248 4.248 6 N -0.582 5.582 7 Si 0.797 3.203 8 H -0.213 1.213 9 H -0.220 1.220 10 H -0.195 1.195 11 C 0.043 3.957 12 C -0.190 4.190 13 C 0.317 3.683 14 O -0.450 6.450 15 N -0.380 5.380 16 C -0.053 4.053 17 C 0.280 3.720 18 O -0.358 6.358 19 C -0.190 4.190 20 C -0.095 4.095 21 C -0.156 4.156 22 C -0.100 4.100 23 C -0.153 4.153 24 C -0.091 4.091 25 H 0.028 0.972 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.250 0.750 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.166 0.834 38 H 0.174 0.826 39 H 0.174 0.826 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.347 -24.842 8.132 28.908 hybrid contribution -0.106 1.450 0.502 1.538 sum 12.241 -23.392 8.633 27.777 Atomic orbital electron populations 1.20607 0.82458 0.96066 0.97988 1.44284 1.02374 1.01630 1.85888 1.19532 0.97218 0.86150 1.36587 0.91234 1.25734 0.98616 1.01608 0.98811 1.70236 1.20114 1.27247 1.40644 0.85258 0.78283 0.79685 0.77064 1.21273 1.22023 1.19499 1.20592 0.95850 0.86490 0.92741 1.22245 1.00632 0.93180 1.02956 1.20872 0.78231 0.86220 0.82939 1.90637 1.56101 1.66047 1.32206 1.45903 1.58526 1.24058 1.09518 1.21749 0.99937 0.87646 0.95940 1.22746 0.74764 0.84362 0.90115 1.90528 1.43399 1.53864 1.47968 1.20296 1.05722 0.97376 0.95619 1.21550 0.95649 0.96546 0.95749 1.21458 0.98639 0.94358 1.01174 1.21887 0.96063 0.99681 0.92418 1.21563 0.98928 0.96591 0.98216 1.21785 0.94433 0.93866 0.99062 0.97212 0.96327 0.95169 0.94205 0.93818 0.92817 0.89247 0.89715 0.75034 0.86682 0.86469 0.85744 0.83357 0.82643 0.82619 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.80 9.02 127.77 1.15 9.96 16 2 N -0.62 -32.12 2.93 -726.89 -2.13 -34.25 16 3 C -0.26 -14.87 9.68 84.03 0.81 -14.05 16 4 H 0.07 3.82 7.86 -2.91 -0.02 3.80 16 5 C -0.05 -2.98 5.06 84.86 0.43 -2.55 16 6 N -0.94 -55.63 10.67 21.65 0.23 -55.40 16 7 Si 0.97 45.70 29.58 68.60 2.03 47.73 16 8 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 9 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 C 0.17 7.41 5.00 86.38 0.43 7.84 16 12 C -0.15 -5.53 6.02 29.85 0.18 -5.35 16 13 C 0.53 17.59 7.83 87.66 0.69 18.27 16 14 O -0.57 -21.49 15.98 -3.05 -0.05 -21.54 16 15 N -0.73 -19.42 5.53 -466.78 -2.58 -22.00 16 16 C 0.07 1.47 4.77 85.63 0.41 1.87 16 17 C 0.40 8.38 7.19 28.03 0.20 8.58 16 18 O -0.48 -12.96 15.66 -2.94 -0.05 -13.00 16 19 C -0.19 -3.21 5.87 -20.15 -0.12 -3.33 16 20 C -0.08 -1.24 9.60 22.58 0.22 -1.03 16 21 C -0.14 -1.53 10.03 22.23 0.22 -1.30 16 22 C -0.08 -0.68 10.04 22.35 0.22 -0.46 16 23 C -0.14 -1.20 10.03 22.23 0.22 -0.98 16 24 C -0.07 -0.89 9.47 22.58 0.21 -0.68 16 25 H 0.01 0.52 7.40 -2.39 -0.02 0.50 16 26 H 0.02 1.00 7.21 -2.39 -0.02 0.98 16 27 H 0.03 1.31 7.83 -2.39 -0.02 1.29 16 28 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.04 1.95 7.99 -2.38 -0.02 1.93 16 30 H 0.05 2.23 7.82 -2.39 -0.02 2.21 16 31 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 33 H 0.41 10.81 7.44 -92.70 -0.69 10.12 16 34 H 0.12 2.13 8.09 -2.39 -0.02 2.11 16 35 H 0.12 2.11 8.09 -2.38 -0.02 2.09 16 36 H 0.12 2.16 7.65 -2.91 -0.02 2.14 16 37 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 38 H 0.16 0.39 8.06 -2.91 -0.02 0.36 16 39 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 40 H 0.15 1.30 7.05 -2.91 -0.02 1.28 16 Total: -1.00 -71.48 344.46 3.10 -68.38 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.36 Total: 13.28 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 5.29 Total: 16.80 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -4.48 Total: -111.65 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.09 Total: -34.54 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -71.48 3.10 -68.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358034598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.115 kcal (2) G-P(sol) polarization free energy of solvation -71.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds