Wall clock time and date at job start Fri Apr 10 2020 14:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.47020 * 111.00068 * 2 1 4 4 C 1.53095 * 109.25620 * 177.61418 * 3 2 1 5 5 O 1.43014 * 109.26285 * 56.84514 * 4 3 2 6 6 C 1.43012 * 113.74304 * 301.33228 * 5 4 3 7 7 C 1.47017 * 110.99892 * 236.36724 * 2 1 3 8 8 H 1.09003 * 109.54192 * 62.43462 * 7 2 1 9 9 C 1.50701 * 109.50605 * 302.32532 * 7 2 1 10 10 O 1.21275 * 119.99916 * 333.02098 * 9 7 2 11 11 N 1.34780 * 120.00054 * 152.73960 * 9 7 2 12 12 C 1.37138 * 119.99650 * 5.01660 * 11 9 7 13 13 H 1.08000 * 120.00209 * 332.22265 * 12 11 9 14 14 C 1.38891 * 119.99861 * 152.22548 * 12 11 9 15 15 N 1.31426 * 119.99875 * 157.22604 * 14 12 11 16 16 Si 1.86795 * 120.00236 * 337.22875 * 14 12 11 17 17 H 1.48498 * 109.47490 * 86.91716 * 16 14 12 18 18 H 1.48500 * 109.47422 * 206.92129 * 16 14 12 19 19 H 1.48508 * 109.46863 * 326.91913 * 16 14 12 20 20 C 1.39784 * 120.00278 * 185.00906 * 11 9 7 21 21 C 1.38953 * 120.07967 * 296.57368 * 20 11 9 22 22 C 1.38086 * 119.92623 * 179.74004 * 21 20 11 23 23 C 1.38318 * 120.07109 * 0.52947 * 22 21 20 24 24 C 1.38308 * 120.15417 * 359.72084 * 23 22 21 25 25 C 1.38075 * 120.07959 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.47550 * 189.58300 * 1 2 3 27 27 H 1.09003 * 109.47129 * 309.57635 * 1 2 3 28 28 H 1.08996 * 109.47393 * 69.58037 * 1 2 3 29 29 H 1.08994 * 109.50249 * 57.67762 * 3 2 1 30 30 H 1.09000 * 109.53933 * 297.56777 * 3 2 1 31 31 H 1.09000 * 109.50579 * 296.91285 * 4 3 2 32 32 H 1.09000 * 109.53905 * 176.80740 * 4 3 2 33 33 H 1.09003 * 109.50419 * 298.73350 * 6 5 4 34 34 H 1.08991 * 109.50808 * 178.60204 * 6 5 4 35 35 H 0.97009 * 119.99681 * 180.02562 * 15 14 12 36 36 H 1.08004 * 120.03889 * 359.97438 * 21 20 11 37 37 H 1.07994 * 119.96513 * 180.25090 * 22 21 20 38 38 H 1.08002 * 119.91708 * 179.69924 * 23 22 21 39 39 H 1.08008 * 119.95584 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.03535 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 0.0602 5 8 4.0174 0.5574 -1.0404 6 6 3.5249 -0.7849 -1.0712 7 6 1.9958 -0.7602 -1.1428 8 1 1.6826 -0.2849 -2.0724 9 6 1.4670 -2.1706 -1.0957 10 8 1.1579 -2.6672 -0.0333 11 7 1.3321 -2.8781 -2.2349 12 6 1.7715 -2.3540 -3.4236 13 1 1.8015 -1.2835 -3.5635 14 6 2.1778 -3.1999 -4.4475 15 7 2.1690 -2.7768 -5.6918 16 14 2.7365 -4.9388 -4.0563 17 1 1.5583 -5.8422 -4.0249 18 1 3.6864 -5.4003 -5.1003 19 1 3.4091 -4.9565 -2.7324 20 6 0.7447 -4.1462 -2.2048 21 6 1.3498 -5.1774 -1.4968 22 6 0.7639 -6.4274 -1.4647 23 6 -0.4182 -6.6565 -2.1454 24 6 -1.0205 -5.6337 -2.8553 25 6 -0.4429 -4.3800 -2.8873 26 1 -0.3634 -1.0133 0.1711 27 1 -0.3633 0.6547 0.7921 28 1 -0.3634 0.3585 -0.9630 29 1 1.6134 1.9091 0.8682 30 1 1.6826 1.8833 -0.9106 31 1 3.8385 0.8643 0.9962 32 1 3.9227 2.3396 0.0033 33 1 3.8385 -1.3084 -0.1680 34 1 3.9220 -1.2984 -1.9467 35 1 2.4525 -3.3677 -6.4070 36 1 2.2754 -5.0005 -0.9690 37 1 1.2316 -7.2283 -0.9113 38 1 -0.8717 -7.6364 -2.1226 39 1 -1.9434 -5.8162 -3.3860 40 1 -0.9136 -3.5819 -3.4423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591703129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:38 Heat of formation + Delta-G solvation = -14.359199 kcal Electronic energy + Delta-G solvation = -24453.746742 eV Core-core repulsion = 21041.853687 eV Total energy + Delta-G solvation = -3411.893055 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.26854 -39.04637 -37.45020 -35.38331 -34.76421 -32.16226 -31.26825 -30.37513 -29.24217 -28.26780 -25.20093 -24.37573 -23.83729 -22.27465 -21.99542 -20.36491 -19.03175 -17.97934 -16.75770 -16.14305 -15.96114 -15.75989 -15.38578 -14.82408 -14.77302 -14.48012 -14.24078 -13.77908 -13.42461 -13.32982 -13.02937 -12.89421 -12.72909 -12.34053 -12.29819 -11.97586 -11.79497 -11.31058 -11.10193 -10.93117 -10.89784 -10.69388 -10.60852 -10.33827 -10.01175 -9.50914 -9.34386 -8.80826 -8.46266 -8.28390 -8.00503 -7.73345 -6.61058 -4.18993 1.86368 1.97584 3.12992 3.26693 3.29741 3.43447 3.81854 4.08861 4.12509 4.36336 4.45076 4.89243 5.10533 5.27892 5.35730 5.40624 5.43133 5.49276 5.59776 5.61035 5.72252 5.77529 5.80876 5.86831 5.95882 6.00039 6.14052 6.18938 6.29905 6.31708 6.39219 6.57695 6.88170 7.03105 7.10297 7.14701 7.22902 7.25851 7.39907 7.56164 7.85525 8.13615 8.75641 9.14876 9.44159 10.46469 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.006829 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.670423 B = 4098.906973 C = 4812.760828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.522 5.522 3 C 0.019 3.981 4 C 0.061 3.939 5 O -0.381 6.381 6 C 0.082 3.918 7 C 0.051 3.949 8 H 0.077 0.923 9 C 0.490 3.510 10 O -0.558 6.558 11 N -0.421 5.421 12 C -0.362 4.362 13 H 0.114 0.886 14 C 0.080 3.920 15 N -0.848 5.848 16 Si 0.859 3.141 17 H -0.255 1.255 18 H -0.292 1.292 19 H -0.259 1.259 20 C 0.159 3.841 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.140 4.140 24 C -0.115 4.115 25 C -0.112 4.112 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.023 0.977 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.115 0.885 35 H 0.278 0.722 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 1.617 6.606 7.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.248 5.248 3 C -0.109 4.109 4 C -0.016 4.016 5 O -0.299 6.299 6 C 0.004 3.996 7 C -0.061 4.061 8 H 0.095 0.905 9 C 0.279 3.721 10 O -0.439 6.439 11 N -0.138 5.138 12 C -0.486 4.486 13 H 0.132 0.868 14 C -0.129 4.129 15 N -0.481 5.481 16 Si 0.685 3.315 17 H -0.179 1.179 18 H -0.219 1.219 19 H -0.183 1.183 20 C 0.066 3.934 21 C -0.144 4.144 22 C -0.136 4.136 23 C -0.158 4.158 24 C -0.134 4.134 25 C -0.132 4.132 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.088 0.912 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.500 1.241 7.207 7.465 hybrid contribution -0.171 -0.502 -0.765 0.931 sum -1.671 0.739 6.442 6.696 Atomic orbital electron populations 1.22426 0.86803 1.03614 0.99552 1.61962 1.08484 1.12066 1.42308 1.22808 0.96611 0.90124 1.01403 1.22645 0.92303 0.96261 0.90398 1.88008 1.69519 1.24255 1.48117 1.22528 0.90414 0.83227 1.03384 1.22091 0.97210 0.93459 0.93290 0.90545 1.19997 0.81144 0.87802 0.83121 1.90590 1.52565 1.71584 1.29189 1.41550 1.51343 1.13093 1.07806 1.19171 1.45691 0.94831 0.88934 0.86839 1.25150 0.94761 0.98665 0.94369 1.69778 1.41346 1.38056 0.98938 0.87182 0.80640 0.84980 0.78686 1.17941 1.21914 1.18344 1.17650 0.92313 0.86349 0.97038 1.21226 0.99994 0.92557 1.00617 1.20862 0.96223 0.96418 1.00120 1.20952 0.96636 0.98747 0.99493 1.20901 0.99847 0.92963 0.99660 1.21168 0.94124 0.97568 1.00304 0.89958 0.91807 0.95874 0.89830 0.94071 0.92452 0.88765 0.92372 0.86733 0.91178 0.86195 0.86510 0.86730 0.86397 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.12 60.06 0.55 0.95 16 2 N -0.52 -9.30 4.53 -235.97 -1.07 -10.37 16 3 C 0.02 0.27 5.65 -3.71 -0.02 0.25 16 4 C 0.06 0.85 7.01 37.21 0.26 1.11 16 5 O -0.38 -6.67 10.83 -35.23 -0.38 -7.05 16 6 C 0.08 1.55 6.24 37.21 0.23 1.78 16 7 C 0.05 1.02 1.67 -68.75 -0.11 0.90 16 8 H 0.08 1.62 6.32 -51.93 -0.33 1.29 16 9 C 0.49 11.15 5.78 -10.98 -0.06 11.09 16 10 O -0.56 -13.68 14.70 5.56 0.08 -13.60 16 11 N -0.42 -9.98 2.47 -58.98 -0.15 -10.12 16 12 C -0.36 -9.07 8.79 -14.94 -0.13 -9.20 16 13 H 0.11 2.95 6.27 -52.49 -0.33 2.62 16 14 C 0.08 2.07 5.23 -17.48 -0.09 1.98 16 15 N -0.85 -22.81 13.96 55.49 0.77 -22.03 16 16 Si 0.86 20.37 23.52 -169.99 -4.00 16.37 16 17 H -0.25 -5.97 5.67 56.52 0.32 -5.65 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.26 -6.12 6.01 56.52 0.34 -5.78 16 20 C 0.16 3.63 2.34 -83.70 -0.20 3.43 16 21 C -0.12 -2.68 5.64 -39.37 -0.22 -2.90 16 22 C -0.12 -2.17 9.53 -39.61 -0.38 -2.55 16 23 C -0.14 -2.39 9.84 -39.53 -0.39 -2.78 16 24 C -0.12 -2.08 9.82 -39.62 -0.39 -2.46 16 25 C -0.11 -2.36 8.77 -39.37 -0.35 -2.71 16 26 H 0.08 1.58 6.36 -51.93 -0.33 1.25 16 27 H 0.06 0.88 8.05 -51.93 -0.42 0.47 16 28 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.11 2.26 7.79 -51.93 -0.40 1.86 16 35 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.12 2.65 7.57 -52.48 -0.40 2.26 16 37 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.13 2.65 8.06 -52.49 -0.42 2.23 16 LS Contribution 315.88 15.07 4.76 4.76 Total: -1.00 -29.31 315.88 -6.99 -36.30 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.71 Total: 6.86 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.30 Total: -1.12 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.44 Total: -42.52 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.30 Total: -20.65 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.00 Total: 16.37 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.31 -6.99 -36.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591703129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.936 kcal (2) G-P(sol) polarization free energy of solvation -29.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds