Wall clock time and date at job start Fri Apr 10 2020 14:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.47020 * 111.00068 * 2 1 4 4 C 1.53095 * 109.25620 * 177.61418 * 3 2 1 5 5 O 1.43014 * 109.26285 * 56.84514 * 4 3 2 6 6 C 1.43012 * 113.74304 * 301.33228 * 5 4 3 7 7 C 1.47017 * 110.99892 * 236.36724 * 2 1 3 8 8 H 1.09003 * 109.54192 * 62.43462 * 7 2 1 9 9 C 1.50701 * 109.50605 * 302.32532 * 7 2 1 10 10 O 1.21275 * 119.99916 * 333.02098 * 9 7 2 11 11 N 1.34780 * 120.00054 * 152.73960 * 9 7 2 12 12 C 1.37138 * 119.99650 * 5.01660 * 11 9 7 13 13 H 1.08000 * 120.00209 * 332.22265 * 12 11 9 14 14 C 1.38891 * 119.99861 * 152.22548 * 12 11 9 15 15 N 1.31426 * 119.99875 * 157.22604 * 14 12 11 16 16 Si 1.86795 * 120.00236 * 337.22875 * 14 12 11 17 17 H 1.48498 * 109.47490 * 86.91716 * 16 14 12 18 18 H 1.48500 * 109.47422 * 206.92129 * 16 14 12 19 19 H 1.48508 * 109.46863 * 326.91913 * 16 14 12 20 20 C 1.39784 * 120.00278 * 185.00906 * 11 9 7 21 21 C 1.38953 * 120.07967 * 296.57368 * 20 11 9 22 22 C 1.38086 * 119.92623 * 179.74004 * 21 20 11 23 23 C 1.38318 * 120.07109 * 0.52947 * 22 21 20 24 24 C 1.38308 * 120.15417 * 359.72084 * 23 22 21 25 25 C 1.38075 * 120.07959 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.47550 * 189.58300 * 1 2 3 27 27 H 1.09003 * 109.47129 * 309.57635 * 1 2 3 28 28 H 1.08996 * 109.47393 * 69.58037 * 1 2 3 29 29 H 1.08994 * 109.50249 * 57.67762 * 3 2 1 30 30 H 1.09000 * 109.53933 * 297.56777 * 3 2 1 31 31 H 1.09000 * 109.50579 * 296.91285 * 4 3 2 32 32 H 1.09000 * 109.53905 * 176.80740 * 4 3 2 33 33 H 1.09003 * 109.50419 * 298.73350 * 6 5 4 34 34 H 1.08991 * 109.50808 * 178.60204 * 6 5 4 35 35 H 0.97009 * 119.99681 * 180.02562 * 15 14 12 36 36 H 1.08004 * 120.03889 * 359.97438 * 21 20 11 37 37 H 1.07994 * 119.96513 * 180.25090 * 22 21 20 38 38 H 1.08002 * 119.91708 * 179.69924 * 23 22 21 39 39 H 1.08008 * 119.95584 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.03535 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 0.0602 5 8 4.0174 0.5574 -1.0404 6 6 3.5249 -0.7849 -1.0712 7 6 1.9958 -0.7602 -1.1428 8 1 1.6826 -0.2849 -2.0724 9 6 1.4670 -2.1706 -1.0957 10 8 1.1579 -2.6672 -0.0333 11 7 1.3321 -2.8781 -2.2349 12 6 1.7715 -2.3540 -3.4236 13 1 1.8015 -1.2835 -3.5635 14 6 2.1778 -3.1999 -4.4475 15 7 2.1690 -2.7768 -5.6918 16 14 2.7365 -4.9388 -4.0563 17 1 1.5583 -5.8422 -4.0249 18 1 3.6864 -5.4003 -5.1003 19 1 3.4091 -4.9565 -2.7324 20 6 0.7447 -4.1462 -2.2048 21 6 1.3498 -5.1774 -1.4968 22 6 0.7639 -6.4274 -1.4647 23 6 -0.4182 -6.6565 -2.1454 24 6 -1.0205 -5.6337 -2.8553 25 6 -0.4429 -4.3800 -2.8873 26 1 -0.3634 -1.0133 0.1711 27 1 -0.3633 0.6547 0.7921 28 1 -0.3634 0.3585 -0.9630 29 1 1.6134 1.9091 0.8682 30 1 1.6826 1.8833 -0.9106 31 1 3.8385 0.8643 0.9962 32 1 3.9227 2.3396 0.0033 33 1 3.8385 -1.3084 -0.1680 34 1 3.9220 -1.2984 -1.9467 35 1 2.4525 -3.3677 -6.4070 36 1 2.2754 -5.0005 -0.9690 37 1 1.2316 -7.2283 -0.9113 38 1 -0.8717 -7.6364 -2.1226 39 1 -1.9434 -5.8162 -3.3860 40 1 -0.9136 -3.5819 -3.4423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591703129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:37 Heat of formation + Delta-G solvation = -35.004034 kcal Electronic energy + Delta-G solvation = -24454.641969 eV Core-core repulsion = 21041.853687 eV Total energy + Delta-G solvation = -3412.788282 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.92000 -40.49834 -39.02631 -36.95604 -36.40545 -34.10858 -32.70171 -31.89015 -30.71630 -29.68123 -27.10565 -25.85368 -25.23152 -23.75114 -23.51046 -21.79171 -20.83396 -19.64802 -18.45415 -17.68800 -17.47203 -17.26134 -16.97902 -16.38249 -16.17762 -15.94606 -15.88641 -15.32150 -14.94596 -14.82938 -14.68123 -14.61588 -14.31696 -14.02552 -13.84377 -13.36329 -13.23362 -12.89555 -12.66087 -12.56999 -12.46315 -12.22045 -12.18220 -11.84294 -11.68116 -11.20654 -10.93054 -10.48995 -10.30071 -9.83009 -9.43232 -9.41000 -8.60313 -6.18411 0.32630 0.44455 1.23982 1.33386 1.39467 1.65897 2.18639 2.24090 2.70482 2.76680 2.96053 3.07426 3.82340 3.86683 3.96300 3.99120 4.02515 4.07357 4.23692 4.25621 4.27115 4.46524 4.52972 4.53815 4.61123 4.64336 4.66793 4.70787 4.85750 4.91398 4.96386 5.08491 5.30676 5.48420 5.54670 5.57492 5.71825 5.89928 5.96599 5.97581 6.07668 6.29159 6.82420 7.25196 7.61027 8.50376 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.006829 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.670423 B = 4098.906973 C = 4812.760828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.533 5.533 3 C 0.018 3.982 4 C 0.054 3.946 5 O -0.393 6.393 6 C 0.092 3.908 7 C 0.058 3.942 8 H 0.058 0.942 9 C 0.489 3.511 10 O -0.579 6.579 11 N -0.430 5.430 12 C -0.353 4.353 13 H 0.094 0.906 14 C 0.049 3.951 15 N -0.883 5.883 16 Si 0.907 3.093 17 H -0.246 1.246 18 H -0.296 1.296 19 H -0.265 1.265 20 C 0.124 3.876 21 C -0.146 4.146 22 C -0.117 4.117 23 C -0.127 4.127 24 C -0.111 4.111 25 C -0.134 4.134 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.019 0.981 29 H 0.118 0.882 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.131 0.869 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.281 0.719 36 H 0.103 0.897 37 H 0.152 0.848 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.472 0.609 7.877 8.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.259 5.259 3 C -0.110 4.110 4 C -0.022 4.022 5 O -0.311 6.311 6 C 0.014 3.986 7 C -0.054 4.054 8 H 0.075 0.925 9 C 0.279 3.721 10 O -0.461 6.461 11 N -0.147 5.147 12 C -0.478 4.478 13 H 0.112 0.888 14 C -0.157 4.157 15 N -0.519 5.519 16 Si 0.732 3.268 17 H -0.170 1.170 18 H -0.223 1.223 19 H -0.190 1.190 20 C 0.033 3.967 21 C -0.166 4.166 22 C -0.136 4.136 23 C -0.145 4.145 24 C -0.129 4.129 25 C -0.154 4.154 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.038 0.962 29 H 0.136 0.864 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.169 0.831 38 H 0.181 0.819 39 H 0.172 0.828 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.301 0.234 8.489 8.798 hybrid contribution -0.016 -0.163 -1.046 1.058 sum -2.316 0.072 7.443 7.795 Atomic orbital electron populations 1.22383 0.86381 1.02560 1.00623 1.62003 1.09036 1.14070 1.40773 1.22985 0.96874 0.88213 1.02892 1.22998 0.92163 0.97555 0.89479 1.87989 1.69711 1.23475 1.49925 1.22275 0.89589 0.84323 1.02444 1.21946 0.97848 0.92067 0.93530 0.92477 1.20426 0.80401 0.88625 0.82636 1.90551 1.53530 1.72341 1.29713 1.41592 1.51798 1.13915 1.07403 1.19000 1.45360 0.94053 0.89431 0.88843 1.25564 0.94906 1.01123 0.94153 1.69828 1.43202 1.39287 0.99588 0.86436 0.80225 0.82354 0.77777 1.16998 1.22324 1.18965 1.17977 0.93582 0.86163 0.99008 1.21287 1.00124 0.93942 1.01247 1.21339 0.96578 0.95828 0.99825 1.21523 0.95486 1.00401 0.97094 1.21376 1.00735 0.91674 0.99108 1.21292 0.94228 0.99035 1.00806 0.92946 0.88347 0.96214 0.86373 0.94216 0.91780 0.85092 0.92446 0.88586 0.90940 0.87853 0.83065 0.81942 0.82768 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.12 127.69 1.16 2.11 16 2 N -0.53 -18.76 4.53 -900.48 -4.08 -22.84 16 3 C 0.02 0.47 5.65 86.31 0.49 0.96 16 4 C 0.05 1.40 7.01 72.01 0.50 1.90 16 5 O -0.39 -13.64 10.83 -148.98 -1.61 -15.25 16 6 C 0.09 3.57 6.24 72.01 0.45 4.02 16 7 C 0.06 2.39 1.67 44.18 0.07 2.47 16 8 H 0.06 2.56 6.32 -2.39 -0.02 2.55 16 9 C 0.49 23.13 5.78 87.66 0.51 23.64 16 10 O -0.58 -29.20 14.70 -3.01 -0.04 -29.25 16 11 N -0.43 -21.16 2.47 -458.91 -1.13 -22.30 16 12 C -0.35 -18.54 8.79 84.02 0.74 -17.80 16 13 H 0.09 5.19 6.27 -2.91 -0.02 5.17 16 14 C 0.05 2.60 5.23 84.91 0.44 3.04 16 15 N -0.88 -48.97 13.96 21.65 0.30 -48.66 16 16 Si 0.91 42.77 23.52 68.60 1.61 44.38 16 17 H -0.25 -11.08 5.67 99.48 0.56 -10.51 16 18 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 19 H -0.26 -12.58 6.01 99.48 0.60 -11.98 16 20 C 0.12 5.73 2.34 38.22 0.09 5.82 16 21 C -0.15 -6.25 5.64 22.41 0.13 -6.12 16 22 C -0.12 -3.98 9.53 22.25 0.21 -3.77 16 23 C -0.13 -3.80 9.84 22.31 0.22 -3.58 16 24 C -0.11 -3.66 9.82 22.25 0.22 -3.44 16 25 C -0.13 -5.62 8.77 22.40 0.20 -5.42 16 26 H 0.05 2.05 6.36 -2.39 -0.02 2.03 16 27 H 0.10 2.53 8.05 -2.39 -0.02 2.51 16 28 H 0.02 0.65 8.12 -2.39 -0.02 0.63 16 29 H 0.12 2.36 8.09 -2.39 -0.02 2.34 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.10 4.03 7.79 -2.39 -0.02 4.01 16 35 H 0.28 14.63 8.31 -92.70 -0.77 13.86 16 36 H 0.10 4.66 7.57 -2.91 -0.02 4.63 16 37 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 38 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 40 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -65.97 315.88 1.26 -64.71 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.78 Total: 25.38 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 5.43 Total: 3.82 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -4.91 Total: -93.80 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -1.66 Total: -44.49 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.61 Total: 44.38 kcal Total: -65.97 1.26 -64.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591703129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.710 kcal (2) G-P(sol) polarization free energy of solvation -65.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds