Wall clock time and date at job start Fri Apr 10 2020 14:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.46834 * 2 1 4 4 C 1.46506 * 120.00266 * 269.99815 * 3 2 1 5 5 C 1.34775 * 119.99986 * 90.00363 * 3 2 1 6 6 O 1.21282 * 120.00007 * 359.97438 * 5 3 2 7 7 C 1.50698 * 120.00451 * 179.97438 * 5 3 2 8 8 N 1.46494 * 109.47597 * 179.97438 * 7 5 3 9 9 C 1.34776 * 120.00009 * 179.97438 * 8 7 5 10 10 O 1.21609 * 120.00181 * 0.02562 * 9 8 7 11 11 C 1.47435 * 119.99851 * 180.02562 * 9 8 7 12 12 C 1.39227 * 120.28589 * 356.68203 * 11 9 8 13 13 C 1.38221 * 120.09856 * 180.27824 * 12 11 9 14 14 C 1.38826 * 120.67147 * 359.70359 * 13 12 11 15 15 C 1.37601 * 120.57272 * 359.97438 * 14 13 12 16 16 C 1.40712 * 119.87956 * 0.02809 * 15 14 13 17 17 C 1.40891 * 120.32826 * 179.97438 * 16 15 14 18 18 H 1.07992 * 119.99945 * 145.79815 * 17 16 15 19 19 C 1.40280 * 119.99726 * 325.79419 * 17 16 15 20 20 N 1.30629 * 119.99933 * 340.74440 * 19 17 16 21 21 Si 1.86801 * 119.99539 * 160.74541 * 19 17 16 22 22 H 1.48504 * 109.46785 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47134 * 299.99889 * 21 19 17 24 24 H 1.48491 * 109.47228 * 59.99956 * 21 19 17 25 25 H 1.08998 * 109.46877 * 299.99683 * 1 2 3 26 26 H 1.08998 * 109.47207 * 60.00183 * 1 2 3 27 27 H 1.08997 * 109.47125 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47236 * 240.00083 * 2 1 3 29 29 H 1.08991 * 109.47215 * 120.00189 * 2 1 3 30 30 H 1.08997 * 109.46911 * 270.00497 * 4 3 2 31 31 H 1.08996 * 109.46617 * 30.00442 * 4 3 2 32 32 H 1.08997 * 109.46823 * 150.00522 * 4 3 2 33 33 H 1.09004 * 109.46984 * 59.99743 * 7 5 3 34 34 H 1.09005 * 109.47130 * 300.00043 * 7 5 3 35 35 H 0.96994 * 119.99831 * 359.97438 * 8 7 5 36 36 H 1.08007 * 119.95363 * 0.02562 * 12 11 9 37 37 H 1.07993 * 119.66821 * 179.72086 * 13 12 11 38 38 H 1.08002 * 119.71786 * 180.02562 * 14 13 12 39 39 H 1.07990 * 120.06274 * 180.02562 * 15 14 13 40 40 H 0.96992 * 120.00306 * 354.83710 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 2.2429 2.0165 1.1672 6 8 2.0404 1.4449 2.2175 7 6 2.7457 3.4372 1.1673 8 7 2.9079 3.8978 2.5485 9 6 3.3503 5.1468 2.7947 10 8 3.6145 5.8916 1.8704 11 6 3.5140 5.6101 4.1848 12 6 3.1484 4.7875 5.2468 13 6 3.2981 5.2280 6.5483 14 6 3.8181 6.4874 6.8143 15 6 4.1945 7.3206 5.7860 16 6 4.0523 6.8961 4.4520 17 6 4.4343 7.7417 3.3917 18 1 4.8522 7.3210 2.4892 19 6 4.2716 9.1302 3.5085 20 7 3.4476 9.6188 4.3966 21 14 5.2332 10.2801 2.3939 22 1 4.8849 11.6874 2.7158 23 1 6.6883 10.0705 2.6035 24 1 4.8913 9.9968 0.9770 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.2919 1.9006 -1.5834 31 1 1.5816 1.6878 -2.0283 32 1 2.0955 3.1411 -1.1383 33 1 2.0280 4.0766 0.6533 34 1 3.7061 3.4828 0.6536 35 1 2.6968 3.3039 3.2857 36 1 2.7432 3.8051 5.0533 37 1 3.0080 4.5859 7.3667 38 1 3.9288 6.8159 7.8372 39 1 4.5984 8.2985 6.0023 40 1 2.8931 9.0226 4.9236 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601463814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:07:16 Heat of formation + Delta-G solvation = -54.871132 kcal Electronic energy + Delta-G solvation = -22708.493516 eV Core-core repulsion = 19294.843733 eV Total energy + Delta-G solvation = -3413.649784 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.21684 -38.81722 -36.95077 -36.05950 -34.17934 -33.56286 -31.67644 -30.13665 -29.37192 -27.50609 -26.81002 -25.11464 -23.38732 -22.10096 -20.89666 -19.64550 -19.36683 -18.10602 -17.21034 -16.72534 -16.10291 -15.77318 -15.05769 -14.69645 -14.39560 -14.17922 -13.95147 -13.91561 -13.64292 -13.24292 -13.11236 -12.90567 -12.60431 -12.57341 -12.20343 -12.17783 -12.05456 -11.69555 -11.29884 -11.12160 -10.89182 -10.72539 -10.36082 -10.15612 -9.94868 -9.60443 -9.06235 -8.96594 -8.56378 -8.47211 -7.76376 -7.58093 -7.13173 -4.44660 2.25543 2.45705 2.68867 2.77014 3.20824 3.32092 3.41458 3.92837 4.04115 4.06604 4.36189 4.65420 4.80608 4.82935 4.91833 5.13760 5.19307 5.38218 5.42768 5.44992 5.51003 5.56920 5.66131 5.92342 5.94957 6.05395 6.19924 6.26646 6.52312 6.75256 6.89642 7.02452 7.16179 7.30618 7.53103 7.62470 7.75912 7.90614 7.95579 8.11362 8.23059 8.37503 8.75136 8.87429 9.31514 10.05892 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.004089 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.174402 B = 6845.276520 C = 8096.178643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.619 5.619 4 C 0.073 3.927 5 C 0.511 3.489 6 O -0.534 6.534 7 C 0.109 3.891 8 N -0.739 5.739 9 C 0.567 3.433 10 O -0.539 6.539 11 C -0.265 4.265 12 C -0.042 4.042 13 C -0.258 4.258 14 C -0.074 4.074 15 C -0.202 4.202 16 C 0.123 3.877 17 C -0.468 4.468 18 H 0.105 0.895 19 C 0.031 3.969 20 N -0.794 5.794 21 Si 1.071 2.929 22 H -0.275 1.275 23 H -0.274 1.274 24 H -0.273 1.273 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.403 0.597 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.905 -12.955 -9.657 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.354 5.354 4 C -0.070 4.070 5 C 0.299 3.701 6 O -0.411 6.411 7 C -0.019 4.019 8 N -0.398 5.398 9 C 0.361 3.639 10 O -0.418 6.418 11 C -0.270 4.270 12 C -0.060 4.060 13 C -0.278 4.278 14 C -0.093 4.093 15 C -0.221 4.221 16 C 0.118 3.882 17 C -0.495 4.495 18 H 0.123 0.877 19 C -0.190 4.190 20 N -0.417 5.417 21 Si 0.894 3.106 22 H -0.200 1.200 23 H -0.200 1.200 24 H -0.198 1.198 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.241 0.759 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.568 -11.093 -10.063 15.196 hybrid contribution -0.597 -2.090 0.658 2.271 sum -3.165 -13.184 -9.406 16.501 Atomic orbital electron populations 1.22132 0.95823 1.02211 1.02481 1.21429 0.94485 0.82058 1.03179 1.47854 1.66659 1.14503 1.06338 1.21895 1.01637 0.98309 0.85121 1.20836 0.77060 0.88797 0.83414 1.90677 1.51807 1.67643 1.30942 1.20896 1.02329 0.90958 0.87702 1.45834 1.71590 1.16145 1.06201 1.18378 0.75865 0.79563 0.90066 1.90670 1.51022 1.53802 1.46315 1.19325 1.17372 1.00296 0.90021 1.20791 0.95774 0.96461 0.93021 1.20261 1.14260 0.98020 0.95211 1.20755 0.97216 0.94088 0.97278 1.21247 1.07843 1.00452 0.92560 1.17490 0.87402 0.90781 0.92514 1.21168 1.32454 0.92828 1.03036 0.87705 1.27267 0.96134 0.98139 0.97504 1.70380 1.14144 1.42076 1.15134 0.83551 0.76127 0.75202 0.75692 1.19969 1.19976 1.19824 0.92077 0.92588 0.91582 0.90524 0.89777 0.92082 0.90825 0.90317 0.89112 0.89087 0.75893 0.88831 0.88812 0.88842 0.87493 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.11 0.98 6.13 -4.04 -0.02 0.96 16 3 N -0.62 -6.48 2.87 -181.58 -0.52 -7.00 16 4 C 0.07 0.53 10.24 59.85 0.61 1.14 16 5 C 0.51 7.23 7.74 -10.99 -0.09 7.14 16 6 O -0.53 -9.18 15.25 5.56 0.08 -9.10 16 7 C 0.11 1.67 4.71 -5.20 -0.02 1.65 16 8 N -0.74 -14.22 5.48 -62.56 -0.34 -14.57 16 9 C 0.57 13.43 7.73 -12.52 -0.10 13.33 16 10 O -0.54 -14.07 13.56 5.27 0.07 -14.00 16 11 C -0.27 -6.64 5.92 -104.37 -0.62 -7.26 16 12 C -0.04 -0.93 9.53 -39.22 -0.37 -1.30 16 13 C -0.26 -5.63 10.03 -39.37 -0.39 -6.02 16 14 C -0.07 -1.68 10.01 -39.60 -0.40 -2.08 16 15 C -0.20 -5.10 7.87 -38.88 -0.31 -5.41 16 16 C 0.12 3.30 5.17 -106.54 -0.55 2.75 16 17 C -0.47 -12.90 7.65 -37.81 -0.29 -13.19 16 18 H 0.11 2.99 5.93 -52.49 -0.31 2.68 16 19 C 0.03 0.81 5.04 -17.30 -0.09 0.72 16 20 N -0.79 -21.36 12.57 55.56 0.70 -20.66 16 21 Si 1.07 22.42 29.98 -169.99 -5.10 17.32 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 29 H 0.08 0.88 7.42 -51.93 -0.39 0.49 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 32 H 0.08 0.59 6.44 -51.93 -0.33 0.25 16 33 H 0.09 1.33 7.40 -51.93 -0.38 0.95 16 34 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 35 H 0.40 7.56 5.48 -40.82 -0.22 7.34 16 36 H 0.09 1.83 6.41 -52.48 -0.34 1.50 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.11 2.74 6.94 -52.49 -0.36 2.37 16 40 H 0.30 8.23 6.55 -40.82 -0.27 7.97 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -32.02 334.54 -7.52 -39.54 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -5.20 Total: 11.98 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.25 Total: -8.57 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: -0.17 Total: -42.22 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.16 Total: -23.10 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.10 Total: 17.32 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.02 -7.52 -39.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601463814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.330 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds