Wall clock time and date at job start Fri Apr 10 2020 14:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.46834 * 2 1 4 4 C 1.46506 * 120.00266 * 269.99815 * 3 2 1 5 5 C 1.34775 * 119.99986 * 90.00363 * 3 2 1 6 6 O 1.21282 * 120.00007 * 359.97438 * 5 3 2 7 7 C 1.50698 * 120.00451 * 179.97438 * 5 3 2 8 8 N 1.46494 * 109.47597 * 179.97438 * 7 5 3 9 9 C 1.34776 * 120.00009 * 179.97438 * 8 7 5 10 10 O 1.21609 * 120.00181 * 0.02562 * 9 8 7 11 11 C 1.47435 * 119.99851 * 180.02562 * 9 8 7 12 12 C 1.39227 * 120.28589 * 356.68203 * 11 9 8 13 13 C 1.38221 * 120.09856 * 180.27824 * 12 11 9 14 14 C 1.38826 * 120.67147 * 359.70359 * 13 12 11 15 15 C 1.37601 * 120.57272 * 359.97438 * 14 13 12 16 16 C 1.40712 * 119.87956 * 0.02809 * 15 14 13 17 17 C 1.40891 * 120.32826 * 179.97438 * 16 15 14 18 18 H 1.07992 * 119.99945 * 145.79815 * 17 16 15 19 19 C 1.40280 * 119.99726 * 325.79419 * 17 16 15 20 20 N 1.30629 * 119.99933 * 340.74440 * 19 17 16 21 21 Si 1.86801 * 119.99539 * 160.74541 * 19 17 16 22 22 H 1.48504 * 109.46785 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47134 * 299.99889 * 21 19 17 24 24 H 1.48491 * 109.47228 * 59.99956 * 21 19 17 25 25 H 1.08998 * 109.46877 * 299.99683 * 1 2 3 26 26 H 1.08998 * 109.47207 * 60.00183 * 1 2 3 27 27 H 1.08997 * 109.47125 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47236 * 240.00083 * 2 1 3 29 29 H 1.08991 * 109.47215 * 120.00189 * 2 1 3 30 30 H 1.08997 * 109.46911 * 270.00497 * 4 3 2 31 31 H 1.08996 * 109.46617 * 30.00442 * 4 3 2 32 32 H 1.08997 * 109.46823 * 150.00522 * 4 3 2 33 33 H 1.09004 * 109.46984 * 59.99743 * 7 5 3 34 34 H 1.09005 * 109.47130 * 300.00043 * 7 5 3 35 35 H 0.96994 * 119.99831 * 359.97438 * 8 7 5 36 36 H 1.08007 * 119.95363 * 0.02562 * 12 11 9 37 37 H 1.07993 * 119.66821 * 179.72086 * 13 12 11 38 38 H 1.08002 * 119.71786 * 180.02562 * 14 13 12 39 39 H 1.07990 * 120.06274 * 180.02562 * 15 14 13 40 40 H 0.96992 * 120.00306 * 354.83710 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 2.2429 2.0165 1.1672 6 8 2.0404 1.4449 2.2175 7 6 2.7457 3.4372 1.1673 8 7 2.9079 3.8978 2.5485 9 6 3.3503 5.1468 2.7947 10 8 3.6145 5.8916 1.8704 11 6 3.5140 5.6101 4.1848 12 6 3.1484 4.7875 5.2468 13 6 3.2981 5.2280 6.5483 14 6 3.8181 6.4874 6.8143 15 6 4.1945 7.3206 5.7860 16 6 4.0523 6.8961 4.4520 17 6 4.4343 7.7417 3.3917 18 1 4.8522 7.3210 2.4892 19 6 4.2716 9.1302 3.5085 20 7 3.4476 9.6188 4.3966 21 14 5.2332 10.2801 2.3939 22 1 4.8849 11.6874 2.7158 23 1 6.6883 10.0705 2.6035 24 1 4.8913 9.9968 0.9770 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.2919 1.9006 -1.5834 31 1 1.5816 1.6878 -2.0283 32 1 2.0955 3.1411 -1.1383 33 1 2.0280 4.0766 0.6533 34 1 3.7061 3.4828 0.6536 35 1 2.6968 3.3039 3.2857 36 1 2.7432 3.8051 5.0533 37 1 3.0080 4.5859 7.3667 38 1 3.9288 6.8159 7.8372 39 1 4.5984 8.2985 6.0023 40 1 2.8931 9.0226 4.9236 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601463814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:07:15 Heat of formation + Delta-G solvation = -75.668724 kcal Electronic energy + Delta-G solvation = -22709.395368 eV Core-core repulsion = 19294.843733 eV Total energy + Delta-G solvation = -3414.551635 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.42072 -40.50894 -38.76682 -37.04783 -35.99476 -35.24638 -32.62452 -31.84577 -31.23223 -28.83450 -27.60282 -26.96890 -24.54810 -23.63547 -22.74533 -21.31518 -20.53998 -19.86620 -18.62159 -17.86464 -17.24134 -17.14071 -16.62732 -16.41929 -15.96515 -15.74834 -15.49855 -15.41016 -14.74313 -14.56730 -14.32530 -14.27799 -13.89435 -13.83952 -13.52374 -13.40088 -13.07347 -12.90138 -12.89100 -12.69745 -12.50648 -12.01958 -11.98103 -11.94769 -11.48323 -11.08231 -10.95363 -10.44179 -10.14949 -9.80775 -9.63828 -9.51164 -9.11047 -6.46841 0.36986 0.89640 1.35465 1.49394 1.64456 1.71868 1.79819 2.19942 2.33192 2.46035 2.74149 3.33740 3.54358 4.08119 4.13312 4.18043 4.22775 4.26713 4.28270 4.34426 4.46303 4.51139 4.67754 4.75512 4.80264 4.86605 4.91072 4.96680 5.12220 5.25722 5.38177 5.41040 5.49773 5.64225 5.69530 5.87262 5.94849 6.15371 6.19003 6.31359 6.61081 6.81525 6.89218 6.92482 7.50009 8.04413 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.004089 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.174402 B = 6845.276520 C = 8096.178643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 N -0.609 5.609 4 C 0.065 3.935 5 C 0.511 3.489 6 O -0.572 6.572 7 C 0.106 3.894 8 N -0.727 5.727 9 C 0.563 3.437 10 O -0.570 6.570 11 C -0.286 4.286 12 C -0.044 4.044 13 C -0.246 4.246 14 C -0.070 4.070 15 C -0.224 4.224 16 C 0.099 3.901 17 C -0.508 4.508 18 H 0.085 0.915 19 C -0.002 4.002 20 N -0.816 5.816 21 Si 1.118 2.882 22 H -0.266 1.266 23 H -0.259 1.259 24 H -0.268 1.268 25 H 0.031 0.969 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.407 0.593 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.237 -14.854 -10.380 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.341 5.341 4 C -0.077 4.077 5 C 0.299 3.701 6 O -0.451 6.451 7 C -0.021 4.021 8 N -0.383 5.383 9 C 0.357 3.643 10 O -0.452 6.452 11 C -0.291 4.291 12 C -0.063 4.063 13 C -0.265 4.265 14 C -0.088 4.088 15 C -0.244 4.244 16 C 0.095 3.905 17 C -0.536 4.536 18 H 0.103 0.897 19 C -0.218 4.218 20 N -0.440 5.440 21 Si 0.935 3.065 22 H -0.190 1.190 23 H -0.184 1.184 24 H -0.193 1.193 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.245 0.755 36 H 0.141 0.859 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.111 0.889 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.918 -13.054 -10.816 17.202 hybrid contribution -0.580 -1.780 0.917 2.084 sum -3.498 -14.834 -9.900 18.174 Atomic orbital electron populations 1.22091 0.95245 1.03192 1.01592 1.21640 0.94926 0.80968 1.04003 1.47956 1.64874 1.15091 1.06224 1.22176 1.03381 0.98044 0.84092 1.20572 0.77236 0.88149 0.84142 1.90658 1.53884 1.68169 1.32438 1.21088 1.03269 0.92270 0.85448 1.45627 1.69870 1.14599 1.08239 1.18321 0.75948 0.80602 0.89427 1.90646 1.52495 1.55061 1.46951 1.19739 1.17208 1.00308 0.91822 1.21126 0.95087 0.97343 0.92727 1.20779 1.11785 0.97829 0.96090 1.21153 0.95525 0.93913 0.98226 1.21236 1.09521 1.00717 0.92895 1.17870 0.87581 0.91808 0.93274 1.21141 1.35473 0.93975 1.02999 0.89691 1.28540 0.95923 0.99297 0.97997 1.70494 1.15410 1.41295 1.16752 0.83001 0.75686 0.73715 0.74124 1.19009 1.18383 1.19260 0.95014 0.91302 0.89754 0.87006 0.91615 0.90629 0.87991 0.90680 0.88358 0.88123 0.75483 0.85927 0.84870 0.85539 0.88870 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 10.24 71.98 0.74 -1.61 16 2 C 0.11 1.63 6.13 86.38 0.53 2.16 16 3 N -0.61 -11.49 2.87 -846.77 -2.43 -13.92 16 4 C 0.06 0.75 10.24 127.77 1.31 2.06 16 5 C 0.51 13.97 7.74 87.66 0.68 14.65 16 6 O -0.57 -19.39 15.25 -3.04 -0.05 -19.44 16 7 C 0.11 3.19 4.71 85.63 0.40 3.59 16 8 N -0.73 -27.80 5.48 -470.10 -2.57 -30.38 16 9 C 0.56 27.16 7.73 86.67 0.67 27.83 16 10 O -0.57 -30.71 13.56 -4.06 -0.06 -30.77 16 11 C -0.29 -14.49 5.92 -19.70 -0.12 -14.60 16 12 C -0.04 -1.90 9.53 22.50 0.21 -1.69 16 13 C -0.25 -10.01 10.03 22.41 0.22 -9.79 16 14 C -0.07 -3.04 10.01 22.26 0.22 -2.81 16 15 C -0.22 -11.55 7.87 22.72 0.18 -11.38 16 16 C 0.10 5.49 5.17 -21.11 -0.11 5.38 16 17 C -0.51 -29.33 7.65 23.42 0.18 -29.15 16 18 H 0.09 5.12 5.93 -2.91 -0.02 5.11 16 19 C 0.00 -0.11 5.04 85.37 0.43 0.32 16 20 N -0.82 -45.59 12.57 21.88 0.28 -45.32 16 21 Si 1.12 46.35 29.98 68.60 2.06 48.41 16 22 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 25 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.11 0.97 8.07 -2.38 -0.02 0.95 16 29 H 0.07 1.28 7.42 -2.39 -0.02 1.27 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.66 8.07 -2.39 -0.02 0.64 16 32 H 0.07 0.96 6.44 -2.39 -0.02 0.95 16 33 H 0.10 2.83 7.40 -2.38 -0.02 2.81 16 34 H 0.10 2.85 8.11 -2.38 -0.02 2.83 16 35 H 0.41 14.96 5.48 -92.71 -0.51 14.46 16 36 H 0.12 4.51 6.41 -2.91 -0.02 4.49 16 37 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.09 4.96 6.94 -2.92 -0.02 4.94 16 40 H 0.28 16.35 6.55 -92.71 -0.61 15.74 16 Total: -1.00 -72.88 334.54 3.49 -69.39 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: 0.72 Total: 37.07 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 5.55 Total: -15.04 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -4.73 Total: -89.62 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -0.10 Total: -50.21 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.06 Total: 48.41 kcal Total: -72.88 3.49 -69.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601463814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.279 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds