Wall clock time and date at job start Fri Apr 10 2020 14:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21283 * 119.99770 * 2 1 4 4 N 1.34777 * 120.00262 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00051 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46820 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.46820 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00051 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99353 * 0.02562 * 8 7 6 10 10 C 1.50692 * 119.99931 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.47000 * 180.02562 * 10 8 7 12 12 C 1.37645 * 120.13007 * 265.30719 * 11 10 8 13 13 C 1.38606 * 120.24649 * 180.32491 * 12 11 10 14 14 C 1.38653 * 120.50471 * 359.65965 * 13 12 11 15 15 C 1.37600 * 120.24898 * 0.02562 * 14 13 12 16 16 C 1.40696 * 120.12867 * 84.99790 * 11 10 8 17 17 C 1.41400 * 120.24530 * 359.97438 * 16 11 10 18 18 H 1.08003 * 119.99719 * 25.87056 * 17 16 11 19 19 C 1.39942 * 120.00205 * 205.88123 * 17 16 11 20 20 N 1.30821 * 119.99968 * 16.29869 * 19 17 16 21 21 Si 1.86803 * 120.00009 * 196.30797 * 19 17 16 22 22 H 1.48496 * 109.47194 * 265.18190 * 21 19 17 23 23 H 1.48505 * 109.46937 * 25.18007 * 21 19 17 24 24 H 1.48498 * 109.47234 * 145.18150 * 21 19 17 25 25 H 1.08999 * 109.47261 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47786 * 300.00317 * 1 2 3 27 27 H 1.08999 * 109.47511 * 60.00604 * 1 2 3 28 28 H 0.97002 * 119.99800 * 0.02562 * 4 2 1 29 29 H 1.08994 * 109.47116 * 60.00349 * 5 4 2 30 30 H 1.08997 * 109.47258 * 300.00182 * 5 4 2 31 31 H 1.08994 * 109.47287 * 60.00090 * 6 5 4 32 32 H 1.08997 * 109.47057 * 299.99942 * 6 5 4 33 33 H 0.97002 * 120.00149 * 0.02562 * 7 6 5 34 34 H 1.09000 * 109.47297 * 60.00731 * 10 8 7 35 35 H 1.08997 * 109.47185 * 300.00030 * 10 8 7 36 36 H 1.07994 * 119.87429 * 0.02562 * 12 11 10 37 37 H 1.08002 * 119.74758 * 179.69746 * 13 12 11 38 38 H 1.07998 * 119.87893 * 180.02562 * 14 13 12 39 39 H 1.07997 * 120.12664 * 180.02562 * 15 14 13 40 40 H 0.97002 * 120.00001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1559 -2.6096 0.0010 7 7 5.6209 -2.6096 0.0009 8 6 6.2949 -3.7768 0.0013 9 8 5.6884 -4.8271 0.0013 10 6 7.8018 -3.7767 0.0019 11 6 8.3042 -5.1975 0.0016 12 6 8.6259 -5.8168 1.1880 13 6 9.0946 -7.1212 1.1901 14 6 9.2382 -7.8193 0.0007 15 6 8.9165 -7.2224 -1.1966 16 6 8.4400 -5.8983 -1.2108 17 6 8.1058 -5.2749 -2.4351 18 1 8.1515 -4.1994 -2.5236 19 6 7.7158 -6.0512 -3.5322 20 7 7.3519 -7.2955 -3.3566 21 14 7.7149 -5.3109 -5.2472 22 1 6.3559 -4.8053 -5.5675 23 1 8.6863 -4.1890 -5.3025 24 1 8.1020 -6.3499 -6.2351 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.6959 -2.0072 0.0005 29 1 4.0088 -0.6532 0.8911 30 1 4.0096 -0.6535 -0.8888 31 1 3.7929 -3.1233 -0.8892 32 1 3.7922 -3.1236 0.8907 33 1 6.1059 -1.7695 0.0013 34 1 8.1648 -3.2628 0.8919 35 1 8.1654 -3.2630 -0.8880 36 1 8.5173 -5.2827 2.1203 37 1 9.3493 -7.5977 2.1252 38 1 9.6039 -8.8354 0.0141 39 1 9.0287 -7.7682 -2.1217 40 1 7.0819 -7.8338 -4.1171 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777275422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:06 Heat of formation + Delta-G solvation = -65.343001 kcal Electronic energy + Delta-G solvation = -22218.255707 eV Core-core repulsion = 18804.151829 eV Total energy + Delta-G solvation = -3414.103878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.86069 -39.11736 -37.36687 -35.76279 -33.76577 -33.57565 -31.76100 -30.71747 -29.43868 -28.41258 -26.45993 -24.94156 -22.78133 -21.13432 -20.90635 -20.34792 -19.30642 -17.31277 -17.08117 -16.60854 -16.10410 -15.78726 -15.54743 -15.22414 -15.00592 -14.40046 -14.17401 -13.73696 -13.50941 -13.22356 -13.02751 -12.85174 -12.58665 -12.49824 -11.91442 -11.83436 -11.70505 -11.49399 -11.12733 -11.08566 -10.87809 -10.68323 -10.39317 -10.22135 -9.46633 -9.38737 -9.33058 -9.14131 -9.11629 -8.73026 -7.30042 -7.27900 -6.68490 -4.29624 2.37610 2.72599 2.84621 3.03808 3.08003 3.11462 3.28263 3.41209 3.84652 3.95545 4.47955 4.66484 4.70836 4.88802 4.94057 5.09417 5.30397 5.46587 5.51447 5.76767 5.79126 5.86235 6.00699 6.08557 6.18406 6.30966 6.39279 6.54565 6.75216 6.79385 7.13797 7.19593 7.31043 7.44475 7.66325 7.89368 7.93534 7.97325 8.06978 8.15281 8.34783 8.67291 8.91629 8.94329 9.03712 10.26419 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015218 B = 0.003836 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.461813 B = 7297.719329 C = 8574.811515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.511 3.489 3 O -0.550 6.550 4 N -0.727 5.727 5 C 0.107 3.893 6 C 0.112 3.888 7 N -0.745 5.745 8 C 0.517 3.483 9 O -0.510 6.510 10 C -0.068 4.068 11 C -0.183 4.183 12 C -0.080 4.080 13 C -0.242 4.242 14 C -0.105 4.105 15 C -0.162 4.162 16 C 0.130 3.870 17 C -0.460 4.460 18 H 0.075 0.925 19 C 0.079 3.921 20 N -0.790 5.790 21 Si 0.901 3.099 22 H -0.272 1.272 23 H -0.261 1.261 24 H -0.275 1.275 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.405 0.595 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.397 0.603 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.962 10.229 3.871 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.298 3.702 3 O -0.427 6.427 4 N -0.380 5.380 5 C -0.017 4.017 6 C -0.013 4.013 7 N -0.401 5.401 8 C 0.304 3.696 9 O -0.382 6.382 10 C -0.108 4.108 11 C -0.185 4.185 12 C -0.099 4.099 13 C -0.261 4.261 14 C -0.124 4.124 15 C -0.182 4.182 16 C 0.128 3.872 17 C -0.490 4.490 18 H 0.093 0.907 19 C -0.139 4.139 20 N -0.415 5.415 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.184 1.184 24 H -0.200 1.200 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.239 0.761 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.230 0.770 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.065 9.965 3.733 13.979 hybrid contribution -0.234 0.133 -0.838 0.880 sum -9.300 10.097 2.895 14.029 Atomic orbital electron populations 1.21842 0.91452 1.04380 1.05339 1.20827 0.90685 0.83291 0.75434 1.90735 1.70814 1.31415 1.49747 1.45983 1.07203 1.09152 1.75655 1.21481 0.80166 0.96984 1.03088 1.21256 0.82386 0.94833 1.02849 1.45953 1.05515 1.09474 1.79195 1.21145 0.90870 0.82615 0.74930 1.90712 1.70092 1.31080 1.46338 1.20244 0.89996 0.98005 1.02512 1.18983 1.11121 0.94906 0.93467 1.20293 0.99385 0.94799 0.95388 1.20297 1.13543 0.96006 0.96289 1.20677 1.00606 0.97516 0.93574 1.21280 1.03396 0.96956 0.96529 1.17330 0.87099 0.91455 0.91328 1.19452 1.40413 0.94347 0.94798 0.90715 1.25837 0.92625 0.94550 1.00908 1.69841 1.30698 1.08247 1.32726 0.86422 0.79297 0.79955 0.81764 1.19790 1.18444 1.20050 0.90424 0.88698 0.88667 0.76067 0.90841 0.90744 0.91143 0.91384 0.76956 0.90651 0.88920 0.89760 0.89692 0.89613 0.86587 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.39 36.00 0.37 -0.61 16 2 C 0.51 5.18 7.94 -10.99 -0.09 5.10 16 3 O -0.55 -8.10 17.10 5.56 0.09 -8.00 16 4 N -0.73 -6.48 5.56 -60.30 -0.33 -6.81 16 5 C 0.11 1.10 5.79 -4.04 -0.02 1.08 16 6 C 0.11 1.38 5.79 -4.04 -0.02 1.36 16 7 N -0.75 -10.58 5.56 -60.30 -0.33 -10.91 16 8 C 0.52 10.10 7.82 -10.99 -0.09 10.02 16 9 O -0.51 -12.57 16.03 5.56 0.09 -12.48 16 10 C -0.07 -1.30 5.35 -29.04 -0.16 -1.45 16 11 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 12 C -0.08 -1.85 9.66 -39.66 -0.38 -2.23 16 13 C -0.24 -5.64 10.05 -39.29 -0.39 -6.04 16 14 C -0.11 -2.57 10.02 -39.66 -0.40 -2.97 16 15 C -0.16 -4.33 8.68 -38.87 -0.34 -4.67 16 16 C 0.13 3.47 5.56 -106.82 -0.59 2.87 16 17 C -0.46 -12.02 8.46 -37.74 -0.32 -12.34 16 18 H 0.07 1.83 6.36 -52.48 -0.33 1.50 16 19 C 0.08 2.00 5.16 -17.34 -0.09 1.91 16 20 N -0.79 -21.03 10.98 55.55 0.61 -20.42 16 21 Si 0.90 18.82 29.59 -169.99 -5.03 13.79 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H 0.08 0.28 7.91 -51.93 -0.41 -0.14 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.40 2.61 8.31 -40.82 -0.34 2.27 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.40 4.35 8.47 -40.82 -0.35 4.01 16 34 H 0.08 1.18 8.06 -51.93 -0.42 0.77 16 35 H 0.09 1.69 6.48 -51.93 -0.34 1.36 16 36 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.12 3.18 6.23 -52.49 -0.33 2.85 16 40 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -34.79 344.39 -8.15 -42.94 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.45 Total: 9.52 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.98 Total: -12.82 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.06 Total: -38.14 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: 0.18 Total: -20.48 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.79 -8.15 -42.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777275422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.404 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds