Wall clock time and date at job start Fri Apr 10 2020 14:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21287 * 119.99604 * 2 1 4 4 N 1.34772 * 120.00380 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00243 * 180.02562 * 4 2 1 6 6 C 1.53515 * 114.17059 * 205.00210 * 5 4 2 7 7 N 1.47474 * 87.92797 * 220.32446 * 6 5 4 8 8 C 1.46906 * 110.99716 * 138.70412 * 7 6 5 9 9 C 1.50702 * 109.47241 * 170.00028 * 8 7 6 10 10 C 1.38297 * 119.93318 * 89.99751 * 9 8 7 11 11 C 1.38095 * 120.07013 * 179.97438 * 10 9 8 12 12 C 1.38878 * 119.92880 * 0.02562 * 11 10 9 13 13 O 1.35760 * 120.06871 * 180.02562 * 12 11 10 14 14 C 1.34830 * 116.99828 * 354.45579 * 13 12 11 15 15 H 1.08011 * 119.99812 * 5.06571 * 14 13 12 16 16 C 1.38649 * 120.00275 * 185.05545 * 14 13 12 17 17 N 1.31560 * 119.99474 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00154 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46739 * 60.00732 * 18 16 14 20 20 H 1.48501 * 109.46789 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47486 * 300.00489 * 18 16 14 22 22 C 1.38878 * 119.86543 * 359.97438 * 12 11 10 23 23 C 1.38096 * 119.92776 * 0.02562 * 22 12 11 24 24 C 1.47480 * 87.84151 * 27.01075 * 7 6 5 25 25 H 1.09004 * 109.47105 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47661 * 299.99911 * 1 2 3 27 27 H 1.08998 * 109.47259 * 60.00373 * 1 2 3 28 28 H 0.96996 * 119.99752 * 0.02562 * 4 2 1 29 29 H 1.09000 * 113.25043 * 337.94872 * 5 4 2 30 30 H 1.09000 * 113.47433 * 105.55789 * 6 5 4 31 31 H 1.08994 * 113.47483 * 335.09533 * 6 5 4 32 32 H 1.09000 * 109.47220 * 49.99422 * 8 7 6 33 33 H 1.08999 * 109.46755 * 289.99921 * 8 7 6 34 34 H 1.08000 * 119.96365 * 0.25760 * 10 9 8 35 35 H 1.07999 * 120.03503 * 180.02562 * 11 10 9 36 36 H 0.97005 * 119.99589 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.03375 * 179.97438 * 22 12 11 38 38 H 1.08002 * 119.96606 * 180.02562 * 23 22 12 39 39 H 1.09005 * 113.47482 * 87.75139 * 24 7 6 40 40 H 1.08998 * 113.47549 * 218.22308 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.2748 -2.4365 -0.5903 7 7 5.2776 -2.3783 0.4894 8 6 5.5487 -3.7176 1.0288 9 6 6.7417 -3.6571 1.9476 10 6 6.5627 -3.4029 3.2952 11 6 7.6538 -3.3473 4.1398 12 6 8.9320 -3.5466 3.6345 13 8 10.0066 -3.4931 4.4623 14 6 9.7773 -3.1297 5.7403 15 1 8.7652 -2.9765 6.0849 16 6 10.8407 -2.9528 6.6123 17 7 12.0735 -3.1391 6.1924 18 14 10.5230 -2.4485 8.3826 19 1 9.6819 -3.4765 9.0467 20 1 11.8163 -2.3263 9.1021 21 1 9.8184 -1.1416 8.4063 22 6 9.1085 -3.8017 2.2808 23 6 8.0133 -3.8559 1.4414 24 6 4.2740 -1.6722 1.3075 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6960 -2.0071 0.0005 29 1 4.0763 -0.2389 -0.3749 30 1 4.6976 -2.2891 -1.5841 31 1 3.6253 -3.3099 -0.5332 32 1 5.7563 -4.4045 0.2084 33 1 4.6792 -4.0681 1.5848 34 1 5.5681 -3.2522 3.6882 35 1 7.5133 -3.1492 5.1921 36 1 12.8175 -3.0150 6.8024 37 1 10.1013 -3.9566 1.8849 38 1 8.1498 -4.0547 0.3886 39 1 3.6243 -2.3419 1.8712 40 1 4.6963 -0.8773 1.9221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030036135.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:39 Heat of formation + Delta-G solvation = -26.794896 kcal Electronic energy + Delta-G solvation = -21867.999057 eV Core-core repulsion = 18455.566750 eV Total energy + Delta-G solvation = -3412.432307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.64897 -40.71028 -39.90454 -38.23065 -35.18701 -34.33026 -32.57292 -31.78152 -30.64326 -28.53494 -27.31459 -26.88251 -24.71541 -23.60014 -22.09207 -21.57811 -21.14126 -19.83947 -18.84894 -17.90356 -17.71217 -16.73005 -16.56067 -16.35621 -16.09919 -15.98871 -15.52675 -15.39148 -15.15437 -14.98268 -14.37473 -14.11162 -13.96496 -13.70993 -13.56811 -13.25264 -13.11596 -13.06728 -12.90611 -12.57669 -12.38757 -12.29875 -12.15543 -11.78786 -11.72367 -11.17353 -11.03199 -10.78763 -10.09112 -9.85512 -9.76015 -8.90368 -8.47755 -6.16093 0.60956 0.68624 1.33356 1.44422 1.49978 1.61771 2.17059 2.21363 2.79146 3.07289 3.27880 3.47674 3.53201 3.88006 3.94215 3.96964 4.05497 4.16928 4.24052 4.37908 4.41412 4.52432 4.61543 4.65269 4.69443 4.73537 4.77374 4.84749 4.94593 5.08684 5.12187 5.15512 5.28121 5.35939 5.46693 5.59729 5.71577 5.83263 6.02340 6.06989 6.25198 6.58939 6.96728 7.28518 7.78242 8.75447 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.002821 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.199589 B = 9923.496922 C =10778.180676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.503 3.497 3 O -0.605 6.605 4 N -0.703 5.703 5 C 0.118 3.882 6 C 0.005 3.995 7 N -0.485 5.485 8 C 0.083 3.917 9 C -0.151 4.151 10 C -0.061 4.061 11 C -0.245 4.245 12 C 0.111 3.889 13 O -0.234 6.234 14 C -0.415 4.415 15 H 0.100 0.900 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.019 2.981 19 H -0.256 1.256 20 H -0.271 1.271 21 H -0.259 1.259 22 C -0.207 4.207 23 C -0.051 4.051 24 C -0.013 4.013 25 H 0.109 0.891 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.420 0.580 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.134 0.866 35 H 0.116 0.884 36 H 0.273 0.727 37 H 0.111 0.889 38 H 0.146 0.854 39 H 0.093 0.907 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.819 -1.336 -12.891 28.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.293 3.707 3 O -0.487 6.487 4 N -0.356 5.356 5 C 0.011 3.989 6 C -0.124 4.124 7 N -0.208 5.208 8 C -0.044 4.044 9 C -0.152 4.152 10 C -0.080 4.080 11 C -0.264 4.264 12 C 0.061 3.939 13 O -0.141 6.141 14 C -0.491 4.491 15 H 0.117 0.883 16 C -0.221 4.221 17 N -0.560 5.560 18 Si 0.838 3.162 19 H -0.180 1.180 20 H -0.195 1.195 21 H -0.184 1.184 22 C -0.226 4.226 23 C -0.070 4.070 24 C -0.143 4.143 25 H 0.128 0.872 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.259 0.741 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.152 0.848 35 H 0.134 0.866 36 H 0.082 0.918 37 H 0.129 0.871 38 H 0.163 0.837 39 H 0.110 0.890 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.289 -0.400 -12.980 27.542 hybrid contribution -0.077 -0.397 1.271 1.334 sum -24.366 -0.797 -11.709 27.045 Atomic orbital electron populations 1.21876 0.87908 1.06592 1.05810 1.21731 0.92426 0.82924 0.73663 1.90735 1.72243 1.33601 1.52079 1.45971 1.06018 1.09431 1.74201 1.22380 0.80418 0.99583 0.96536 1.24247 0.93343 0.96954 0.97901 1.68947 1.29780 1.15440 1.06654 1.21436 0.94806 0.90985 0.97193 1.19583 0.95028 1.06959 0.93621 1.20902 0.97501 0.96437 0.93157 1.21223 0.92542 1.11695 1.00921 1.19955 0.87892 0.94590 0.91464 1.83942 1.31115 1.77598 1.21400 1.21771 0.95443 1.48091 0.83768 0.88267 1.26606 0.93839 0.96527 1.05152 1.70185 0.99449 1.48121 1.38206 0.84650 0.78326 0.79407 0.73834 1.17975 1.19512 1.18371 1.20476 1.00233 1.11268 0.90657 1.20866 0.90818 0.96215 0.99066 1.24451 0.93584 0.99236 0.97076 0.87199 0.88395 0.88048 0.74111 0.88444 0.88500 0.87833 0.88489 0.91226 0.84776 0.86611 0.91832 0.87091 0.83665 0.88951 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 10.39 71.24 0.74 -0.30 16 2 C 0.50 8.31 7.94 87.66 0.70 9.01 16 3 O -0.61 -17.42 16.69 -3.05 -0.05 -17.47 16 4 N -0.70 -8.17 5.39 -441.70 -2.38 -10.55 16 5 C 0.12 2.01 4.60 45.45 0.21 2.22 16 6 C 0.00 0.06 7.45 83.58 0.62 0.68 16 7 N -0.49 -10.20 6.32 -932.50 -5.89 -16.09 16 8 C 0.08 1.70 4.94 85.56 0.42 2.12 16 9 C -0.15 -4.65 5.47 -19.83 -0.11 -4.76 16 10 C -0.06 -2.13 9.69 22.25 0.22 -1.92 16 11 C -0.24 -10.95 9.17 22.39 0.21 -10.75 16 12 C 0.11 5.73 6.65 22.58 0.15 5.88 16 13 O -0.23 -14.51 9.76 -22.85 -0.22 -14.73 16 14 C -0.41 -24.81 9.49 67.92 0.64 -24.16 16 15 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 16 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 17 N -0.92 -57.76 13.67 21.61 0.30 -57.46 16 18 Si 1.02 43.77 29.55 68.60 2.03 45.80 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 22 C -0.21 -9.14 9.99 22.39 0.22 -8.91 16 23 C -0.05 -1.76 9.69 22.25 0.22 -1.54 16 24 C -0.01 -0.26 7.52 83.58 0.63 0.37 16 25 H 0.11 -0.06 7.91 -2.39 -0.02 -0.08 16 26 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.42 1.50 8.59 -92.71 -0.80 0.70 16 29 H 0.10 2.33 7.45 -2.39 -0.02 2.31 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.10 0.73 7.90 -2.39 -0.02 0.71 16 32 H 0.10 1.63 8.02 -2.39 -0.02 1.61 16 33 H 0.07 1.13 7.24 -2.39 -0.02 1.12 16 34 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 36 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 37 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 38 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 39 H 0.09 1.41 7.42 -2.38 -0.02 1.39 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -82.86 341.61 -0.62 -83.48 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.26 Total: 20.01 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 5.33 Total: -32.99 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -7.97 Total: -84.10 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.27 Total: -32.20 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -82.86 -0.62 -83.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030036135.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.685 kcal (2) G-P(sol) polarization free energy of solvation -82.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds