Wall clock time and date at job start Fri Apr 10 2020 14:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35911 * 116.99670 * 2 1 4 4 C 1.38847 * 119.98588 * 0.02562 * 3 2 1 5 5 C 1.38246 * 120.24034 * 179.97438 * 4 3 2 6 6 C 1.38007 * 120.20569 * 359.74591 * 5 4 3 7 7 C 1.39566 * 119.96518 * 0.50957 * 6 5 4 8 8 C 1.47862 * 120.11939 * 179.76779 * 7 6 5 9 9 O 1.21546 * 119.99843 * 203.26753 * 8 7 6 10 10 N 1.34777 * 119.99976 * 23.26621 * 8 7 6 11 11 C 1.46498 * 119.99941 * 4.91658 * 10 8 7 12 12 C 1.46497 * 119.99966 * 184.91751 * 10 8 7 13 13 C 1.53497 * 114.20502 * 239.99749 * 12 10 8 14 14 N 1.47070 * 87.98250 * 220.14929 * 13 12 10 15 15 C 1.36939 * 136.05236 * 207.08936 * 14 13 12 16 16 H 1.08006 * 120.00310 * 354.76125 * 15 14 13 17 17 C 1.38816 * 119.99829 * 174.76678 * 15 14 13 18 18 N 1.31613 * 119.99859 * 184.05441 * 17 15 14 19 19 Si 1.86798 * 119.99838 * 4.05733 * 17 15 14 20 20 H 1.48496 * 109.46993 * 174.50265 * 19 17 15 21 21 H 1.48503 * 109.47140 * 294.50067 * 19 17 15 22 22 H 1.48498 * 109.47281 * 54.50280 * 19 17 15 23 23 C 1.47063 * 87.88806 * 27.34442 * 14 13 12 24 24 C 1.38455 * 119.98526 * 180.02562 * 3 2 1 25 25 H 1.09008 * 109.46944 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47460 * 299.99538 * 1 2 3 27 27 H 1.08996 * 109.47446 * 60.00394 * 1 2 3 28 28 H 1.07998 * 119.88166 * 359.96005 * 4 3 2 29 29 H 1.08004 * 119.90123 * 180.02562 * 5 4 3 30 30 H 1.08002 * 120.02150 * 180.25070 * 6 5 4 31 31 H 1.09008 * 109.47399 * 264.01615 * 11 10 8 32 32 H 1.09004 * 109.47212 * 24.01067 * 11 10 8 33 33 H 1.08995 * 109.47255 * 144.01296 * 11 10 8 34 34 H 1.09002 * 113.28258 * 13.07060 * 12 10 8 35 35 H 1.09003 * 113.46272 * 105.36780 * 13 12 10 36 36 H 1.08992 * 113.47113 * 334.93131 * 13 12 10 37 37 H 0.97007 * 120.00390 * 5.00992 * 18 17 15 38 38 H 1.08994 * 113.46930 * 87.43578 * 23 14 13 39 39 H 1.08997 * 113.46890 * 217.87950 * 23 14 13 40 40 H 1.08003 * 120.10226 * 0.04806 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2893 2.3753 0.0005 5 6 1.9114 3.6098 0.0011 6 6 3.2889 3.6932 0.0064 7 6 4.0578 2.5285 0.0004 8 6 5.5340 2.6139 0.0009 9 8 6.1965 1.6857 -0.4196 10 7 6.1448 3.7209 0.4676 11 6 5.3528 4.7943 1.0732 12 6 7.6007 3.8508 0.3693 13 6 8.3110 4.0104 1.7207 14 7 9.1891 5.0031 1.0831 15 6 10.4641 5.4622 1.2797 16 1 11.0356 5.1216 2.1306 17 6 11.0222 6.3655 0.3855 18 7 12.2740 6.7455 0.5292 19 14 9.9963 7.0417 -1.0215 20 1 10.7734 8.0784 -1.7470 21 1 9.6488 5.9400 -1.9548 22 1 8.7511 7.6441 -0.4813 23 6 8.0930 5.2902 0.1456 24 6 3.4285 1.2832 -0.0005 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 0.2109 2.3162 0.0003 29 1 1.3175 4.5120 0.0019 30 1 3.7718 4.6593 0.0109 31 1 5.1446 5.5590 0.3247 32 1 4.4136 4.3865 1.4468 33 1 5.9109 5.2363 1.8986 34 1 8.0556 3.1118 -0.2903 35 1 8.8353 3.1112 2.0442 36 1 7.6740 4.4306 2.4989 37 1 12.8283 6.3407 1.2147 38 1 7.3985 6.0478 0.5086 39 1 8.4316 5.4814 -0.8727 40 1 4.0182 0.3783 -0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044225265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:12:06 Heat of formation + Delta-G solvation = 53.736002 kcal Electronic energy + Delta-G solvation = -22788.460802 eV Core-core repulsion = 19379.520577 eV Total energy + Delta-G solvation = -3408.940225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.85626 -39.84626 -38.30736 -37.18374 -34.89701 -32.36087 -31.45965 -30.60356 -28.01951 -27.74501 -26.96291 -25.42376 -24.30599 -22.64294 -22.13817 -20.23018 -19.16061 -18.27969 -17.54416 -16.98676 -16.55502 -16.15309 -16.12010 -15.91853 -15.39432 -15.11925 -14.41696 -13.90746 -13.82794 -13.72621 -13.26000 -13.15752 -12.87889 -12.66483 -12.56201 -12.17136 -11.97115 -11.61609 -11.55554 -11.35957 -11.26486 -11.06154 -10.59163 -10.41359 -9.83996 -9.36998 -9.28291 -9.17913 -8.95963 -8.50818 -8.34263 -7.20238 -6.34025 -3.27724 0.63792 1.12229 2.71813 2.81146 3.16095 3.37835 3.41607 3.60181 3.63359 4.33955 4.43668 4.56449 4.67354 4.73055 4.75806 4.76432 4.85392 5.02837 5.07741 5.10978 5.17937 5.21127 5.37989 5.44564 5.61220 5.64611 5.78176 5.80388 5.91843 6.05384 6.10624 6.11888 6.19885 6.31308 6.35790 6.44213 6.91297 7.03915 7.04179 7.48290 8.20307 8.21192 8.93877 9.45398 10.29326 11.17450 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.039213 B = 0.003339 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.884489 B = 8384.743785 C = 8659.903868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.117 3.883 4 C -0.188 4.188 5 C -0.090 4.090 6 C -0.142 4.142 7 C -0.088 4.088 8 C 0.556 3.444 9 O -0.533 6.533 10 N -0.592 5.592 11 C 0.058 3.942 12 C 0.102 3.898 13 C 0.112 3.888 14 N -0.620 5.620 15 C -0.303 4.303 16 H 0.085 0.915 17 C -0.023 4.023 18 N -0.932 5.932 19 Si 1.073 2.927 20 H -0.294 1.294 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.084 3.916 24 C -0.094 4.094 25 H 0.100 0.900 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.153 0.847 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.845 -7.624 -0.210 28.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.072 3.928 4 C -0.207 4.207 5 C -0.108 4.108 6 C -0.161 4.161 7 C -0.091 4.091 8 C 0.344 3.656 9 O -0.410 6.410 10 N -0.324 5.324 11 C -0.085 4.085 12 C -0.002 4.002 13 C -0.016 4.016 14 N -0.348 5.348 15 C -0.429 4.429 16 H 0.102 0.898 17 C -0.222 4.222 18 N -0.574 5.574 19 Si 0.906 3.094 20 H -0.221 1.221 21 H -0.219 1.219 22 H -0.217 1.217 23 C -0.043 4.043 24 C -0.114 4.114 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.170 0.830 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.144 0.856 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -27.077 -7.129 -1.634 28.048 hybrid contribution -0.429 -0.794 1.463 1.719 sum -27.507 -7.923 -0.172 28.625 Atomic orbital electron populations 1.23069 0.78313 1.04083 1.01320 1.86104 1.21391 1.26613 1.88812 1.18846 0.91989 0.84416 0.97592 1.21418 1.00174 0.92436 1.06711 1.20926 0.94368 0.97137 0.98363 1.22142 0.94094 0.99227 1.00602 1.19739 0.93233 0.93447 1.02705 1.18280 0.86957 0.82322 0.78057 1.90782 1.66186 1.36903 1.47139 1.47760 1.07856 1.18017 1.58784 1.22510 0.96771 0.90485 0.98693 1.23617 0.76842 0.99438 1.00264 1.22746 0.91453 0.93357 0.94019 1.45781 1.09345 1.44217 1.35491 1.20149 0.85640 1.26431 1.10645 0.89758 1.25728 0.98161 0.97391 1.00940 1.70914 1.05953 1.44218 1.36303 0.83681 0.74023 0.75709 0.75989 1.22146 1.21870 1.21676 1.23258 0.90576 0.93982 0.96455 1.20455 0.91305 0.98195 1.01414 0.88141 0.92608 0.92599 0.85223 0.85077 0.83001 0.91772 0.89349 0.90496 0.85583 0.93039 0.94213 0.92833 0.93518 0.92217 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.16 10.49 -19.46 -0.20 -3.37 16 3 C 0.12 1.25 6.68 -39.28 -0.26 0.98 16 4 C -0.19 -1.58 9.03 -39.35 -0.36 -1.94 16 5 C -0.09 -0.73 10.03 -39.66 -0.40 -1.12 16 6 C -0.14 -1.40 7.54 -39.17 -0.30 -1.70 16 7 C -0.09 -1.13 5.53 -104.98 -0.58 -1.71 16 8 C 0.56 8.90 7.51 -12.32 -0.09 8.81 16 9 O -0.53 -10.43 16.12 5.33 0.09 -10.35 16 10 N -0.59 -9.08 3.11 -174.66 -0.54 -9.63 16 11 C 0.06 0.65 7.24 59.85 0.43 1.08 16 12 C 0.10 1.92 4.55 -67.68 -0.31 1.62 16 13 C 0.11 2.27 8.26 -8.50 -0.07 2.20 16 14 N -0.62 -15.39 3.69 -184.60 -0.68 -16.07 16 15 C -0.30 -8.78 11.09 -15.06 -0.17 -8.95 16 16 H 0.08 2.57 8.05 -52.48 -0.42 2.15 16 17 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 18 N -0.93 -29.50 13.70 55.49 0.76 -28.74 16 19 Si 1.07 26.85 25.11 -169.99 -4.27 22.58 16 20 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 21 H -0.29 -6.92 6.32 56.52 0.36 -6.56 16 22 H -0.29 -6.67 6.70 56.52 0.38 -6.30 16 23 C 0.08 1.76 5.39 -8.36 -0.05 1.71 16 24 C -0.09 -1.19 9.53 -39.02 -0.37 -1.56 16 25 H 0.10 0.37 8.14 -51.92 -0.42 -0.05 16 26 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 27 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 28 H 0.13 0.74 6.28 -52.49 -0.33 0.41 16 29 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 30 H 0.15 1.28 4.29 -52.49 -0.23 1.05 16 31 H 0.06 0.62 7.16 -51.92 -0.37 0.25 16 32 H 0.09 0.80 5.00 -51.93 -0.26 0.54 16 33 H 0.08 0.90 6.45 -51.93 -0.34 0.57 16 34 H 0.13 2.58 7.33 -51.93 -0.38 2.20 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.04 0.74 6.90 -51.93 -0.36 0.38 16 37 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 38 H 0.05 0.90 6.63 -51.93 -0.34 0.56 16 39 H 0.06 1.33 4.00 -51.93 -0.21 1.12 16 40 H 0.14 1.90 7.83 -52.48 -0.41 1.49 16 LS Contribution 318.34 15.07 4.80 4.80 Total: -1.00 -35.24 318.34 -6.60 -41.84 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.93 Total: -0.83 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -1.62 Total: -0.24 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.47 Total: -54.44 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.12 Total: -13.72 kcal Atomic # 14 Polarization: 26.85 SS G_CDS: -4.27 Total: 22.58 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.24 -6.60 -41.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044225265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.580 kcal (2) G-P(sol) polarization free energy of solvation -35.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds