Wall clock time and date at job start Fri Apr 10 2020 14:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21281 * 119.99341 * 2 1 4 4 N 1.34771 * 120.00037 * 180.02562 * 2 1 3 5 5 C 1.46497 * 119.99886 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47415 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.47391 * 305.00040 * 6 5 4 8 8 C 1.50697 * 109.47565 * 185.00031 * 6 5 4 9 9 O 1.21298 * 120.00108 * 340.21713 * 8 6 5 10 10 N 1.34777 * 120.00677 * 160.21959 * 8 6 5 11 11 C 1.46491 * 120.00572 * 176.15045 * 10 8 6 12 12 C 1.37099 * 119.99205 * 356.14853 * 10 8 6 13 13 H 1.07998 * 120.00873 * 354.13452 * 12 10 8 14 14 C 1.38958 * 119.99452 * 174.40939 * 12 10 8 15 15 N 1.31405 * 120.00238 * 7.84288 * 14 12 10 16 16 Si 1.86806 * 119.99601 * 187.84746 * 14 12 10 17 17 H 1.48507 * 109.47070 * 89.99893 * 16 14 12 18 18 H 1.48496 * 109.46937 * 209.99699 * 16 14 12 19 19 H 1.48497 * 109.47277 * 329.99950 * 16 14 12 20 20 C 1.50700 * 109.47123 * 65.00073 * 6 5 4 21 21 C 1.38240 * 119.99809 * 55.64037 * 20 6 5 22 22 C 1.38240 * 119.99990 * 179.81200 * 21 20 6 23 23 C 1.38236 * 119.99589 * 0.39915 * 22 21 20 24 24 C 1.38239 * 120.00345 * 359.85924 * 23 22 21 25 25 C 1.38233 * 120.00034 * 359.95098 * 24 23 22 26 26 H 1.09006 * 109.46547 * 239.99757 * 1 2 3 27 27 H 1.08996 * 109.47406 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47212 * 120.00048 * 1 2 3 29 29 H 0.96995 * 120.00549 * 359.97438 * 4 2 1 30 30 H 1.09004 * 109.46997 * 59.99590 * 5 4 2 31 31 H 1.09003 * 109.47203 * 300.00156 * 5 4 2 32 32 H 1.09005 * 109.47456 * 237.33144 * 11 10 8 33 33 H 1.09000 * 109.47470 * 357.33056 * 11 10 8 34 34 H 1.08998 * 109.47258 * 117.33113 * 11 10 8 35 35 H 0.97001 * 119.99993 * 179.97438 * 15 14 12 36 36 H 1.07995 * 119.99905 * 0.02562 * 21 20 6 37 37 H 1.07998 * 120.00115 * 180.23260 * 22 21 20 38 38 H 1.08003 * 119.99503 * 179.83115 * 23 22 21 39 39 H 1.08000 * 120.00019 * 179.97438 * 24 23 22 40 40 H 1.07991 * 120.00308 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1560 -2.6095 -0.0010 7 1 3.7217 -3.1484 0.8411 8 6 5.6579 -2.6113 0.1223 9 8 6.2903 -1.6137 -0.1538 10 7 6.2986 -3.7213 0.5392 11 6 7.7627 -3.7508 0.5786 12 6 5.5801 -4.8228 0.9266 13 1 4.5031 -4.7707 0.9883 14 6 6.2379 -6.0045 1.2452 15 7 7.5494 -6.0255 1.3255 16 14 5.2579 -7.5635 1.5593 17 1 5.0763 -8.2998 0.2825 18 1 5.9891 -8.4216 2.5258 19 1 3.9291 -7.2086 2.1192 20 6 3.7569 -3.2836 -1.2884 21 6 4.1159 -2.7254 -2.5010 22 6 3.7532 -3.3457 -3.6819 23 6 3.0243 -4.5199 -3.6502 24 6 2.6606 -5.0753 -2.4377 25 6 3.0267 -4.4570 -1.2567 26 1 -0.3632 -0.5139 0.8900 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5138 -0.8899 29 1 1.6960 -2.0072 -0.0005 30 1 4.0095 -0.6534 0.8889 31 1 4.0089 -0.6530 -0.8911 32 1 8.1262 -4.5754 -0.0348 33 1 8.1557 -2.8103 0.1926 34 1 8.0958 -3.8889 1.6072 35 1 8.0085 -6.8504 1.5482 36 1 4.6828 -1.8065 -2.5257 37 1 4.0369 -2.9117 -4.6293 38 1 2.7386 -5.0031 -4.5729 39 1 2.0908 -5.9924 -2.4130 40 1 2.7430 -4.8911 -0.3095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185954680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:52 Heat of formation + Delta-G solvation = -38.290312 kcal Electronic energy + Delta-G solvation = -23680.275270 eV Core-core repulsion = 20267.344485 eV Total energy + Delta-G solvation = -3412.930786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.95591 -38.97458 -38.00327 -35.25915 -34.64631 -32.38969 -31.44851 -30.56785 -29.98106 -28.11996 -26.44115 -24.72605 -23.16967 -22.18403 -21.05858 -20.35924 -19.05448 -17.26875 -16.83576 -16.46983 -16.16307 -15.51367 -15.26475 -14.85282 -14.44257 -14.22045 -14.11529 -13.93297 -13.36256 -13.22488 -12.98300 -12.82380 -12.50015 -12.38471 -12.16378 -11.75918 -11.62177 -11.52623 -11.31708 -11.05826 -10.85088 -10.60201 -10.59333 -10.45917 -10.16555 -9.76053 -9.16325 -8.84342 -8.78582 -8.54689 -8.09814 -7.97694 -6.36927 -3.95439 1.69330 1.76656 2.80715 3.02164 3.10244 3.13220 3.39276 3.75752 3.97535 4.15120 4.73758 4.90650 4.96451 5.17792 5.21884 5.24186 5.29301 5.32827 5.45668 5.48437 5.69410 5.78229 5.84393 5.91251 6.07020 6.22867 6.34898 6.37051 6.42352 6.64367 6.80120 6.83567 6.85384 7.04163 7.22036 7.30277 7.34890 7.43281 7.67435 7.69687 8.29701 8.39666 8.97615 9.43930 9.83419 10.55995 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.005955 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.692520 B = 4700.610329 C = 5234.788206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.506 3.494 3 O -0.550 6.550 4 N -0.726 5.726 5 C 0.143 3.857 6 C -0.065 4.065 7 H 0.099 0.901 8 C 0.457 3.543 9 O -0.609 6.609 10 N -0.434 5.434 11 C 0.121 3.879 12 C -0.328 4.328 13 H 0.100 0.900 14 C 0.036 3.964 15 N -0.871 5.871 16 Si 0.921 3.079 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.052 4.052 21 C -0.104 4.104 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.103 4.103 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.399 0.601 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.035 0.965 34 H 0.058 0.942 35 H 0.268 0.732 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.714 0.074 -4.538 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.293 3.707 3 O -0.428 6.428 4 N -0.377 5.377 5 C 0.020 3.980 6 C -0.087 4.087 7 H 0.117 0.883 8 C 0.244 3.756 9 O -0.497 6.497 10 N -0.150 5.150 11 C -0.021 4.021 12 C -0.455 4.455 13 H 0.118 0.882 14 C -0.168 4.168 15 N -0.510 5.510 16 Si 0.748 3.252 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.053 4.053 21 C -0.122 4.122 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.141 4.141 25 C -0.121 4.121 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.233 0.767 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.747 1.129 -4.592 12.664 hybrid contribution -0.526 -1.678 0.247 1.775 sum -12.274 -0.549 -4.345 13.032 Atomic orbital electron populations 1.21908 0.92138 1.05170 1.04078 1.20725 0.90415 0.83585 0.76000 1.90725 1.70920 1.31423 1.49750 1.46090 1.07962 1.08572 1.75095 1.21142 0.77993 0.95377 1.03529 1.20288 0.96529 0.95343 0.96546 0.88335 1.19278 0.87790 0.84127 0.84447 1.90555 1.67663 1.33707 1.57783 1.43670 1.06460 1.11254 1.53626 1.21605 0.79460 0.98734 1.02348 1.19728 0.92221 0.88861 1.44735 0.88201 1.25287 0.95794 0.99367 0.96361 1.70227 1.07034 1.27702 1.46027 0.86009 0.79413 0.81410 0.78398 1.20079 1.20745 1.19369 1.19460 0.96842 0.95243 0.93745 1.21072 0.98970 1.00222 0.91947 1.21037 0.99133 0.96116 0.97812 1.21030 0.99617 0.96412 0.97595 1.21029 1.00878 0.99641 0.92555 1.21045 0.98098 0.94720 0.98252 0.89573 0.89241 0.89581 0.76729 0.90877 0.90480 0.90915 0.94622 0.92306 0.92147 0.85999 0.86622 0.86773 0.86509 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 10.32 36.01 0.37 -1.20 16 2 C 0.51 7.29 7.94 -10.99 -0.09 7.21 16 3 O -0.55 -10.59 17.09 5.56 0.09 -10.49 16 4 N -0.73 -10.13 5.35 -60.30 -0.32 -10.45 16 5 C 0.14 2.54 4.30 -4.05 -0.02 2.52 16 6 C -0.07 -1.21 1.63 -92.93 -0.15 -1.37 16 7 H 0.10 1.74 6.26 -51.93 -0.33 1.42 16 8 C 0.46 10.74 6.52 -10.99 -0.07 10.67 16 9 O -0.61 -15.86 15.47 5.54 0.09 -15.78 16 10 N -0.43 -10.80 3.03 -122.20 -0.37 -11.17 16 11 C 0.12 3.03 8.88 59.84 0.53 3.56 16 12 C -0.33 -7.89 9.10 -14.93 -0.14 -8.02 16 13 H 0.10 2.19 4.65 -52.49 -0.24 1.95 16 14 C 0.04 0.88 5.44 -17.47 -0.10 0.78 16 15 N -0.87 -22.11 9.47 55.50 0.53 -21.58 16 16 Si 0.92 18.66 29.56 -169.99 -5.02 13.63 16 17 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 18 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 20 C -0.05 -0.90 4.04 -104.62 -0.42 -1.32 16 21 C -0.10 -1.79 8.85 -39.58 -0.35 -2.14 16 22 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 23 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 24 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 25 C -0.10 -1.60 9.08 -39.58 -0.36 -1.96 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.80 8.12 -51.93 -0.42 0.38 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.40 4.50 8.23 -40.82 -0.34 4.17 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.08 1.50 6.90 -51.93 -0.36 1.15 16 32 H 0.07 1.88 6.74 -51.93 -0.35 1.53 16 33 H 0.04 0.87 6.92 -51.93 -0.36 0.52 16 34 H 0.06 1.50 7.34 -51.93 -0.38 1.12 16 35 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 36 H 0.12 2.23 7.28 -52.49 -0.38 1.84 16 37 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.12 1.74 7.35 -52.49 -0.39 1.36 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -31.00 334.23 -7.17 -38.17 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.22 Total: 10.40 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -1.98 Total: 2.23 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.17 Total: -43.20 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: 0.18 Total: -26.27 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.00 -7.17 -38.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185954680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.125 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds