Wall clock time and date at job start Fri Apr 10 2020 14:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21281 * 119.99341 * 2 1 4 4 N 1.34771 * 120.00037 * 180.02562 * 2 1 3 5 5 C 1.46497 * 119.99886 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47415 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.47391 * 305.00040 * 6 5 4 8 8 C 1.50697 * 109.47565 * 185.00031 * 6 5 4 9 9 O 1.21298 * 120.00108 * 340.21713 * 8 6 5 10 10 N 1.34777 * 120.00677 * 160.21959 * 8 6 5 11 11 C 1.46491 * 120.00572 * 176.15045 * 10 8 6 12 12 C 1.37099 * 119.99205 * 356.14853 * 10 8 6 13 13 H 1.07998 * 120.00873 * 354.13452 * 12 10 8 14 14 C 1.38958 * 119.99452 * 174.40939 * 12 10 8 15 15 N 1.31405 * 120.00238 * 7.84288 * 14 12 10 16 16 Si 1.86806 * 119.99601 * 187.84746 * 14 12 10 17 17 H 1.48507 * 109.47070 * 89.99893 * 16 14 12 18 18 H 1.48496 * 109.46937 * 209.99699 * 16 14 12 19 19 H 1.48497 * 109.47277 * 329.99950 * 16 14 12 20 20 C 1.50700 * 109.47123 * 65.00073 * 6 5 4 21 21 C 1.38240 * 119.99809 * 55.64037 * 20 6 5 22 22 C 1.38240 * 119.99990 * 179.81200 * 21 20 6 23 23 C 1.38236 * 119.99589 * 0.39915 * 22 21 20 24 24 C 1.38239 * 120.00345 * 359.85924 * 23 22 21 25 25 C 1.38233 * 120.00034 * 359.95098 * 24 23 22 26 26 H 1.09006 * 109.46547 * 239.99757 * 1 2 3 27 27 H 1.08996 * 109.47406 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47212 * 120.00048 * 1 2 3 29 29 H 0.96995 * 120.00549 * 359.97438 * 4 2 1 30 30 H 1.09004 * 109.46997 * 59.99590 * 5 4 2 31 31 H 1.09003 * 109.47203 * 300.00156 * 5 4 2 32 32 H 1.09005 * 109.47456 * 237.33144 * 11 10 8 33 33 H 1.09000 * 109.47470 * 357.33056 * 11 10 8 34 34 H 1.08998 * 109.47258 * 117.33113 * 11 10 8 35 35 H 0.97001 * 119.99993 * 179.97438 * 15 14 12 36 36 H 1.07995 * 119.99905 * 0.02562 * 21 20 6 37 37 H 1.07998 * 120.00115 * 180.23260 * 22 21 20 38 38 H 1.08003 * 119.99503 * 179.83115 * 23 22 21 39 39 H 1.08000 * 120.00019 * 179.97438 * 24 23 22 40 40 H 1.07991 * 120.00308 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1560 -2.6095 -0.0010 7 1 3.7217 -3.1484 0.8411 8 6 5.6579 -2.6113 0.1223 9 8 6.2903 -1.6137 -0.1538 10 7 6.2986 -3.7213 0.5392 11 6 7.7627 -3.7508 0.5786 12 6 5.5801 -4.8228 0.9266 13 1 4.5031 -4.7707 0.9883 14 6 6.2379 -6.0045 1.2452 15 7 7.5494 -6.0255 1.3255 16 14 5.2579 -7.5635 1.5593 17 1 5.0763 -8.2998 0.2825 18 1 5.9891 -8.4216 2.5258 19 1 3.9291 -7.2086 2.1192 20 6 3.7569 -3.2836 -1.2884 21 6 4.1159 -2.7254 -2.5010 22 6 3.7532 -3.3457 -3.6819 23 6 3.0243 -4.5199 -3.6502 24 6 2.6606 -5.0753 -2.4377 25 6 3.0267 -4.4570 -1.2567 26 1 -0.3632 -0.5139 0.8900 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5138 -0.8899 29 1 1.6960 -2.0072 -0.0005 30 1 4.0095 -0.6534 0.8889 31 1 4.0089 -0.6530 -0.8911 32 1 8.1262 -4.5754 -0.0348 33 1 8.1557 -2.8103 0.1926 34 1 8.0958 -3.8889 1.6072 35 1 8.0085 -6.8504 1.5482 36 1 4.6828 -1.8065 -2.5257 37 1 4.0369 -2.9117 -4.6293 38 1 2.7386 -5.0031 -4.5729 39 1 2.0908 -5.9924 -2.4130 40 1 2.7430 -4.8911 -0.3095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185954680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:52 Heat of formation + Delta-G solvation = -58.307372 kcal Electronic energy + Delta-G solvation = -23681.143275 eV Core-core repulsion = 20267.344485 eV Total energy + Delta-G solvation = -3413.798790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42019 -40.30990 -39.51406 -36.96229 -36.25493 -33.76437 -33.27982 -31.73502 -30.96341 -29.47776 -28.23722 -26.52306 -24.60177 -23.36917 -22.45837 -21.59668 -20.84222 -18.86352 -18.23689 -17.95408 -17.51440 -16.83817 -16.60443 -16.17353 -16.07452 -15.91403 -15.56261 -15.42470 -14.72631 -14.56829 -14.38722 -14.12488 -13.76020 -13.51983 -13.33446 -13.30768 -13.14875 -12.96086 -12.84032 -12.67184 -12.60039 -12.26008 -12.04590 -11.82069 -11.67568 -11.02992 -11.02405 -10.52041 -10.14698 -9.95109 -9.71943 -9.47220 -8.21253 -5.86772 0.49459 0.59342 1.43965 1.48639 1.60181 1.66882 1.96246 2.15456 2.32857 2.90959 3.08341 3.18163 3.74622 3.85294 3.96744 4.05414 4.23477 4.29184 4.31176 4.38304 4.56535 4.61087 4.71551 4.73511 4.77896 4.85635 4.94036 5.12338 5.13544 5.17323 5.23375 5.38767 5.40042 5.44688 5.65488 5.69152 5.75408 5.79695 6.19901 6.39968 6.59368 7.10327 7.28247 7.55215 7.94934 8.73851 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.005955 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.692520 B = 4700.610329 C = 5234.788206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.499 3.501 3 O -0.607 6.607 4 N -0.711 5.711 5 C 0.157 3.843 6 C -0.048 4.048 7 H 0.112 0.888 8 C 0.446 3.554 9 O -0.645 6.645 10 N -0.449 5.449 11 C 0.136 3.864 12 C -0.341 4.341 13 H 0.122 0.878 14 C -0.012 4.012 15 N -0.905 5.905 16 Si 0.989 3.011 17 H -0.271 1.271 18 H -0.289 1.289 19 H -0.245 1.245 20 C -0.068 4.068 21 C -0.129 4.129 22 C -0.128 4.128 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.108 4.108 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.416 0.584 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.027 0.973 34 H 0.046 0.954 35 H 0.268 0.732 36 H 0.094 0.906 37 H 0.133 0.867 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.455 -2.518 -5.180 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.289 3.711 3 O -0.489 6.489 4 N -0.364 5.364 5 C 0.032 3.968 6 C -0.069 4.069 7 H 0.130 0.870 8 C 0.235 3.765 9 O -0.535 6.535 10 N -0.165 5.165 11 C -0.008 4.008 12 C -0.468 4.468 13 H 0.140 0.860 14 C -0.212 4.212 15 N -0.545 5.545 16 Si 0.812 3.188 17 H -0.197 1.197 18 H -0.215 1.215 19 H -0.168 1.168 20 C -0.069 4.069 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.140 4.140 24 C -0.137 4.137 25 C -0.126 4.126 26 H 0.133 0.867 27 H 0.110 0.890 28 H 0.131 0.869 29 H 0.253 0.747 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.150 0.850 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.537 -1.485 -5.235 16.462 hybrid contribution 0.692 -0.841 0.386 1.156 sum -14.845 -2.326 -4.849 15.789 Atomic orbital electron populations 1.21917 0.87021 1.06246 1.06699 1.21833 0.92698 0.82425 0.74166 1.90705 1.72533 1.33391 1.52276 1.45912 1.06114 1.09714 1.74613 1.20701 0.80555 0.94570 1.00982 1.20080 0.92619 0.95952 0.98281 0.87046 1.20167 0.90052 0.83124 0.83181 1.90520 1.69166 1.34924 1.58885 1.43941 1.06245 1.12235 1.54069 1.21341 0.80589 0.97663 1.01164 1.20219 0.93230 0.88587 1.44753 0.86018 1.26253 0.96717 1.02389 0.95877 1.70352 1.08750 1.28440 1.46933 0.84964 0.78844 0.76869 0.78101 1.19692 1.21548 1.16819 1.19333 0.98659 0.96461 0.92460 1.21036 1.00170 1.00091 0.93427 1.21286 0.99057 0.96704 0.97550 1.21444 0.97978 0.95392 0.99144 1.21445 1.00087 1.00314 0.91811 1.21250 0.97677 0.93786 0.99840 0.86652 0.89048 0.86898 0.74679 0.93527 0.93119 0.91988 0.95445 0.93503 0.92217 0.88768 0.84954 0.83419 0.83188 0.84523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 10.32 71.24 0.74 -1.66 16 2 C 0.50 14.04 7.94 87.66 0.70 14.73 16 3 O -0.61 -24.07 17.09 -3.03 -0.05 -24.12 16 4 N -0.71 -19.37 5.35 -463.07 -2.48 -21.85 16 5 C 0.16 5.81 4.30 86.38 0.37 6.19 16 6 C -0.05 -1.80 1.63 -12.29 -0.02 -1.82 16 7 H 0.11 3.82 6.26 -2.39 -0.01 3.81 16 8 C 0.45 21.76 6.52 87.66 0.57 22.33 16 9 O -0.64 -35.63 15.47 -3.09 -0.05 -35.68 16 10 N -0.45 -22.89 3.03 -658.90 -1.99 -24.88 16 11 C 0.14 7.11 8.88 127.77 1.13 8.25 16 12 C -0.34 -16.19 9.10 84.04 0.76 -15.43 16 13 H 0.12 5.08 4.65 -2.91 -0.01 5.07 16 14 C -0.01 -0.55 5.44 84.93 0.46 -0.09 16 15 N -0.91 -46.47 9.47 21.66 0.21 -46.26 16 16 Si 0.99 36.50 29.56 68.60 2.03 38.53 16 17 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 18 H -0.29 -10.97 7.11 99.48 0.71 -10.27 16 19 H -0.25 -8.04 7.11 99.48 0.71 -7.34 16 20 C -0.07 -2.29 4.04 -19.86 -0.08 -2.37 16 21 C -0.13 -4.47 8.85 22.27 0.20 -4.27 16 22 C -0.13 -3.59 10.05 22.27 0.22 -3.36 16 23 C -0.12 -2.85 10.05 22.27 0.22 -2.62 16 24 C -0.12 -2.78 10.05 22.27 0.22 -2.56 16 25 C -0.11 -2.98 9.08 22.27 0.20 -2.78 16 26 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.09 1.40 8.12 -2.39 -0.02 1.38 16 28 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.42 8.42 8.23 -92.71 -0.76 7.66 16 30 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.05 2.14 6.90 -2.39 -0.02 2.12 16 32 H 0.06 3.34 6.74 -2.38 -0.02 3.32 16 33 H 0.03 1.43 6.92 -2.39 -0.02 1.41 16 34 H 0.05 2.51 7.34 -2.39 -0.02 2.49 16 35 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 36 H 0.09 3.70 7.28 -2.91 -0.02 3.68 16 37 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 38 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 39 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 40 H 0.14 3.32 7.35 -2.92 -0.02 3.30 16 Total: -1.00 -71.34 334.23 3.67 -67.67 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.30 Total: 32.05 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 5.71 Total: 14.54 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -4.27 Total: -92.99 kcal Atomic # 8 Polarization: -59.70 SS G_CDS: -0.10 Total: -59.80 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Total: -71.34 3.67 -67.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185954680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.364 kcal (2) G-P(sol) polarization free energy of solvation -71.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds