Wall clock time and date at job start Fri Apr 10 2020 14:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00206 * 2 1 4 4 H 1.48503 * 109.46809 * 269.99625 * 3 2 1 5 5 H 1.48502 * 109.47194 * 29.99504 * 3 2 1 6 6 H 1.48502 * 109.47021 * 149.99875 * 3 2 1 7 7 C 1.38811 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00257 * 197.35672 * 7 2 1 9 9 N 1.36938 * 119.99829 * 17.35777 * 7 2 1 10 10 C 1.46928 * 120.63295 * 27.66878 * 9 7 2 11 11 C 1.53194 * 108.77825 * 126.43134 * 10 9 7 12 12 C 1.53045 * 109.30923 * 54.63804 * 11 10 9 13 13 C 1.53039 * 109.53671 * 298.63335 * 12 11 10 14 14 H 1.09003 * 109.50296 * 301.38287 * 13 12 11 15 15 C 1.53006 * 109.49654 * 181.32051 * 13 12 11 16 16 N 1.46504 * 109.46780 * 175.06590 * 15 13 12 17 17 C 1.34777 * 119.99561 * 179.97438 * 16 15 13 18 18 O 1.21517 * 119.99855 * 0.27533 * 17 16 15 19 19 C 1.48135 * 119.99928 * 179.97438 * 17 16 15 20 20 C 1.40118 * 121.14406 * 179.71832 * 19 17 16 21 21 C 1.38505 * 117.82156 * 179.78776 * 20 19 17 22 22 N 1.31920 * 119.96470 * 0.49382 * 21 20 19 23 23 N 1.28272 * 122.52072 * 359.74494 * 22 21 20 24 24 C 1.31922 * 122.32474 * 359.97438 * 23 22 21 25 25 C 1.46941 * 120.60573 * 207.68732 * 9 7 2 26 26 H 0.96997 * 119.99559 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.58465 * 6.64348 * 10 9 7 28 28 H 1.09004 * 109.58588 * 246.22255 * 10 9 7 29 29 H 1.08994 * 109.49688 * 294.68748 * 11 10 9 30 30 H 1.08994 * 109.49724 * 174.58395 * 11 10 9 31 31 H 1.08997 * 109.45760 * 178.61434 * 12 11 10 32 32 H 1.08990 * 109.45064 * 58.64781 * 12 11 10 33 33 H 1.09002 * 109.47128 * 55.06392 * 15 13 12 34 34 H 1.08996 * 109.46639 * 295.06350 * 15 13 12 35 35 H 0.96998 * 120.00356 * 359.97438 * 16 15 13 36 36 H 1.07997 * 121.08346 * 0.02562 * 20 19 17 37 37 H 1.07995 * 120.01218 * 180.21801 * 21 20 19 38 38 H 1.08001 * 120.17310 * 180.02562 * 24 23 22 39 39 H 1.09001 * 109.56049 * 113.76150 * 25 9 7 40 40 H 1.08996 * 109.61386 * 353.34161 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2234 0.2796 9 7 1.3722 -2.3612 -0.3528 10 6 0.2276 -2.3350 -1.2735 11 6 0.5000 -3.3059 -2.4267 12 6 0.8175 -4.6908 -1.8580 13 6 2.0733 -4.6108 -0.9870 14 1 2.9074 -4.2420 -1.5841 15 6 2.4088 -6.0020 -0.4456 16 7 3.6745 -5.9474 0.2901 17 6 4.1713 -7.0632 0.8599 18 8 3.5719 -8.1155 0.7590 19 6 5.4515 -7.0083 1.6033 20 6 5.9869 -8.1523 2.2098 21 6 7.1901 -8.0236 2.8837 22 7 7.7877 -6.8492 2.9466 23 7 7.3005 -5.7972 2.3978 24 6 6.1638 -5.8128 1.7284 25 6 1.8196 -3.6545 0.1825 26 1 -0.4849 0.8401 -0.0004 27 1 0.0985 -1.3269 -1.6674 28 1 -0.6747 -2.6408 -0.7437 29 1 1.3486 -2.9489 -3.0101 30 1 -0.3809 -3.3683 -3.0656 31 1 0.9876 -5.3895 -2.6771 32 1 -0.0216 -5.0364 -1.2543 33 1 2.5008 -6.7024 -1.2756 34 1 1.6140 -6.3330 0.2228 35 1 4.1550 -5.1083 0.3672 36 1 5.4799 -9.1040 2.1504 37 1 7.6365 -8.8833 3.3611 38 1 5.7857 -4.9061 1.2796 39 1 1.0475 -4.0676 0.8315 40 1 2.7407 -3.5172 0.7488 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611130273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:07:56 Heat of formation + Delta-G solvation = 15.575043 kcal Electronic energy + Delta-G solvation = -22685.114378 eV Core-core repulsion = 19306.812120 eV Total energy + Delta-G solvation = -3378.302257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.27821 -40.68344 -39.33184 -36.39841 -34.88079 -34.28729 -33.66710 -32.29135 -31.83604 -27.70570 -27.19771 -25.90489 -25.43150 -23.82924 -22.64598 -21.99097 -20.72165 -19.32567 -18.76849 -18.56415 -17.41306 -16.88539 -16.81501 -16.68208 -16.18667 -16.02425 -15.66987 -15.33288 -15.01419 -14.77240 -14.54839 -14.43767 -14.00974 -13.74802 -13.62499 -13.02127 -12.87256 -12.52458 -12.26466 -12.07745 -11.95555 -11.81552 -11.73171 -11.54793 -11.36624 -11.24884 -11.24817 -11.08803 -10.75216 -10.52555 -10.20597 -8.67497 -7.86247 -5.31506 -0.79284 -0.19645 1.47974 1.49678 1.57588 1.60935 1.88466 2.51762 2.54143 3.01272 3.18803 3.28845 3.47198 3.48914 3.60373 3.80439 3.98218 4.01588 4.06399 4.33814 4.42080 4.51460 4.57948 4.64151 4.72667 4.76763 4.87919 4.91287 5.00483 5.07382 5.12322 5.17813 5.31624 5.36209 5.44831 5.58777 5.68385 5.80101 6.29328 6.40100 6.92722 7.16071 7.52876 7.87731 8.38837 9.19869 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.003965 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.420320 B = 7059.505455 C = 8511.523732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.963 3.037 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.261 4.261 8 H 0.073 0.927 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.131 4.131 12 C -0.097 4.097 13 C -0.102 4.102 14 H 0.080 0.920 15 C 0.137 3.863 16 N -0.706 5.706 17 C 0.565 3.435 18 O -0.560 6.560 19 C -0.141 4.141 20 C -0.050 4.050 21 C 0.048 3.952 22 N -0.259 5.259 23 N -0.272 5.272 24 C 0.073 3.927 25 C 0.150 3.850 26 H 0.248 0.752 27 H 0.050 0.950 28 H -0.008 1.008 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.412 0.588 36 H 0.182 0.818 37 H 0.221 0.779 38 H 0.192 0.808 39 H 0.007 0.993 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.941 -16.789 -0.183 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.791 3.209 4 H -0.213 1.213 5 H -0.226 1.226 6 H -0.191 1.191 7 C -0.391 4.391 8 H 0.090 0.910 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.170 4.170 12 C -0.135 4.135 13 C -0.123 4.123 14 H 0.098 0.902 15 C 0.013 3.987 16 N -0.358 5.358 17 C 0.350 3.650 18 O -0.439 6.439 19 C -0.155 4.155 20 C -0.080 4.080 21 C -0.116 4.116 22 N -0.100 5.100 23 N -0.112 5.112 24 C -0.092 4.092 25 C 0.024 3.976 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.010 0.990 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.249 0.751 36 H 0.199 0.801 37 H 0.237 0.763 38 H 0.209 0.791 39 H 0.025 0.975 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.705 -16.460 0.300 19.637 hybrid contribution -1.164 0.939 -0.309 1.527 sum 9.541 -15.521 -0.009 18.219 Atomic orbital electron populations 1.70195 1.06745 1.25714 1.55578 1.25757 0.95927 1.01452 1.01465 0.85332 0.78233 0.79798 0.77501 1.21304 1.22611 1.19080 1.19567 0.93143 0.85957 1.40411 0.90973 1.44313 1.35818 1.02162 1.50955 1.20641 0.87665 0.97840 0.89238 1.21998 1.00938 0.96052 0.97966 1.21332 0.96515 0.96671 0.98960 1.21748 0.99283 0.93399 0.97845 0.90207 1.21404 0.84354 0.97044 0.95901 1.45945 1.24720 1.11500 1.53613 1.18029 0.84240 0.83856 0.78827 1.90778 1.61228 1.30541 1.61371 1.21218 0.96710 0.96437 1.01149 1.22963 0.94638 1.00016 0.90370 1.25007 0.92543 0.98372 0.95727 1.72829 1.27550 0.97194 1.12386 1.73054 1.10585 1.21265 1.06330 1.24831 0.91566 0.98725 0.94125 1.21069 0.97215 0.85747 0.93570 0.94263 0.93146 0.98979 0.92817 0.91358 0.89931 0.92543 0.90008 0.91702 0.75095 0.80071 0.76279 0.79127 0.97487 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.73 11.19 21.65 0.24 -54.49 16 2 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 3 Si 0.96 43.91 29.59 68.60 2.03 45.94 16 4 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.26 -13.67 9.58 84.03 0.81 -12.87 16 8 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 9 N -0.61 -28.85 3.00 -699.06 -2.09 -30.94 16 10 C 0.17 7.99 5.31 86.36 0.46 8.45 16 11 C -0.13 -4.49 6.08 30.67 0.19 -4.31 16 12 C -0.10 -2.70 5.17 30.62 0.16 -2.54 16 13 C -0.10 -2.83 2.37 -10.72 -0.03 -2.86 16 14 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 15 C 0.14 3.16 5.07 86.38 0.44 3.60 16 16 N -0.71 -14.96 5.29 -465.68 -2.46 -17.42 16 17 C 0.56 12.80 7.80 86.87 0.68 13.48 16 18 O -0.56 -15.86 16.49 -3.77 -0.06 -15.92 16 19 C -0.14 -2.69 5.92 -19.83 -0.12 -2.81 16 20 C -0.05 -0.75 9.77 22.79 0.22 -0.52 16 21 C 0.05 0.67 11.30 84.74 0.96 1.63 16 22 N -0.26 -5.61 11.48 -57.33 -0.66 -6.27 16 23 N -0.27 -6.51 11.49 -56.54 -0.65 -7.16 16 24 C 0.07 1.43 10.84 85.04 0.92 2.35 16 25 C 0.15 5.51 5.60 86.36 0.48 5.99 16 26 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.05 2.70 6.04 -2.39 -0.01 2.68 16 28 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.41 7.55 5.86 -92.71 -0.54 7.01 16 36 H 0.18 2.03 7.80 -2.91 -0.02 2.01 16 37 H 0.22 1.06 8.06 -2.91 -0.02 1.03 16 38 H 0.19 2.89 6.53 -2.91 -0.02 2.88 16 39 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.06 2.00 7.14 -2.39 -0.02 1.98 16 Total: -1.00 -70.37 330.47 2.44 -67.93 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.51 Total: 11.08 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 5.58 Total: 7.25 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -5.62 Total: -116.28 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.06 Total: -15.92 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -70.37 2.44 -67.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611130273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.506 kcal (2) G-P(sol) polarization free energy of solvation -70.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds