Wall clock time and date at job start Fri Apr 10 2020 14:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86796 * 120.00386 * 2 1 4 4 H 1.48500 * 109.47585 * 270.00237 * 3 2 1 5 5 H 1.48507 * 109.46823 * 30.00023 * 3 2 1 6 6 H 1.48503 * 109.47546 * 149.99647 * 3 2 1 7 7 C 1.38816 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99758 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00127 * 179.97438 * 7 2 1 10 10 C 1.46507 * 119.99681 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.85007 * 26.37035 * 10 9 7 12 12 C 1.53777 * 113.61172 * 157.56887 * 10 9 7 13 13 C 1.53779 * 87.08575 * 89.11535 * 12 10 9 14 14 H 1.08994 * 113.61632 * 140.06378 * 13 12 10 15 15 N 1.46506 * 113.61276 * 270.88424 * 13 12 10 16 16 C 1.34772 * 120.00124 * 274.97988 * 15 13 12 17 17 O 1.21284 * 119.99783 * 0.02562 * 16 15 13 18 18 C 1.50701 * 120.00070 * 180.02562 * 16 15 13 19 19 H 1.09001 * 115.54666 * 34.33448 * 18 16 15 20 20 C 1.53072 * 117.51147 * 248.60484 * 18 16 15 21 21 C 1.53001 * 59.98624 * 252.52795 * 20 18 16 22 22 H 1.08994 * 117.49695 * 107.50347 * 21 20 18 23 23 C 1.50705 * 117.49352 * 252.50528 * 21 20 18 24 24 C 1.34664 * 126.59665 * 33.43346 * 23 21 20 25 25 N 1.34127 * 108.02013 * 179.87398 * 24 23 21 26 26 C 1.30499 * 109.25564 * 0.39711 * 25 24 23 27 27 N 1.35040 * 108.69965 * 359.75510 * 26 25 24 28 28 H 0.96995 * 126.39336 * 179.97438 * 27 26 25 29 29 C 1.53781 * 113.61225 * 255.06224 * 10 9 7 30 30 H 0.97003 * 119.99794 * 0.02562 * 1 2 3 31 31 H 0.96993 * 120.00252 * 0.02562 * 9 7 2 32 32 H 1.09005 * 113.61537 * 334.56293 * 12 10 9 33 33 H 1.08999 * 113.69172 * 203.67921 * 12 10 9 34 34 H 0.97000 * 119.99440 * 94.98013 * 15 13 12 35 35 H 1.09003 * 117.48898 * 145.03895 * 20 18 16 36 36 H 1.08997 * 117.51319 * 0.02562 * 20 18 16 37 37 H 1.08003 * 125.98769 * 0.02562 * 24 23 21 38 38 H 1.08003 * 125.65005 * 179.77498 * 26 25 24 39 39 H 1.09007 * 113.61181 * 156.33916 * 29 10 9 40 40 H 1.09000 * 113.61420 * 25.43780 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4710 0.0000 11 1 3.5441 -3.2876 -0.4458 12 6 5.5478 -2.3534 -0.5382 13 6 5.9795 -2.0429 0.9047 14 1 6.9203 -2.5136 1.1898 15 7 5.9332 -0.6168 1.2371 16 6 6.9803 0.1785 0.9414 17 8 7.9608 -0.2864 0.3996 18 6 6.9329 1.6453 1.2838 19 1 6.3974 1.8972 2.1992 20 6 6.8565 2.6403 0.1231 21 6 8.1530 2.4948 0.9224 22 1 8.9899 1.9928 0.4369 23 6 8.5223 3.6160 1.8593 24 6 7.6714 4.3916 2.5579 25 7 8.3970 5.2652 3.2715 26 6 9.6649 5.0660 3.0351 27 7 9.7869 4.0457 2.1590 28 1 10.6158 3.6849 1.8076 29 6 4.7351 -2.8225 1.3613 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3622 -0.0004 32 1 5.6895 -1.5192 -1.2255 33 1 5.9498 -3.2910 -0.9221 34 1 5.1488 -0.2450 1.6700 35 1 6.2705 3.5467 0.2751 36 1 6.8402 2.2339 -0.8882 37 1 6.5938 4.3208 2.5474 38 1 10.4814 5.6245 3.4686 39 1 4.9138 -3.8892 1.4973 40 1 4.2207 -2.3672 2.2076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022228564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:08:57 Heat of formation + Delta-G solvation = 87.734153 kcal Electronic energy + Delta-G solvation = -22881.015960 eV Core-core repulsion = 19505.842756 eV Total energy + Delta-G solvation = -3375.173204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.30847 -40.21297 -38.51337 -36.42579 -33.79396 -32.75658 -32.64649 -30.53757 -29.45705 -25.58204 -25.23072 -23.98687 -23.47131 -22.03920 -21.84048 -20.66149 -19.91566 -19.06977 -18.33739 -17.64035 -17.03965 -15.93112 -15.18688 -15.11604 -14.96041 -14.89206 -14.53278 -14.18693 -13.93273 -13.68126 -13.67158 -12.77571 -12.64453 -12.22666 -12.18475 -12.06712 -11.82821 -11.24245 -11.03517 -10.95466 -10.77785 -10.49795 -10.28983 -10.22552 -10.20604 -9.89609 -9.68853 -9.62306 -9.05321 -8.72882 -8.48091 -7.39066 -5.86452 -3.23495 1.67094 2.54729 2.77130 2.90904 3.21222 3.28537 3.31657 3.38268 3.83943 4.32038 4.48144 4.53603 4.55604 4.67751 4.85865 4.90970 5.01950 5.04175 5.14288 5.24685 5.31705 5.34002 5.55377 5.64583 5.69026 5.71337 5.81581 6.03058 6.06357 6.11166 6.24519 6.44965 6.47744 6.51043 6.65557 6.88508 7.10162 7.67944 7.81540 7.91332 8.32958 8.33882 9.10349 9.82113 10.01701 11.31499 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.004710 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.416374 B = 5943.835741 C = 7288.200025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.093 0.907 9 N -0.730 5.730 10 C 0.170 3.830 11 H 0.072 0.928 12 C -0.167 4.167 13 C 0.124 3.876 14 H 0.082 0.918 15 N -0.700 5.700 16 C 0.545 3.455 17 O -0.547 6.547 18 C -0.174 4.174 19 H 0.129 0.871 20 C -0.132 4.132 21 C -0.056 4.056 22 H 0.125 0.875 23 C 0.013 3.987 24 C -0.023 4.023 25 N -0.492 5.492 26 C 0.181 3.819 27 N -0.565 5.565 28 H 0.420 0.580 29 C -0.177 4.177 30 H 0.261 0.739 31 H 0.362 0.638 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.408 0.592 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.169 0.831 38 H 0.209 0.791 39 H 0.087 0.913 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.663 4.445 3.657 20.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.189 4.189 3 Si 0.712 3.288 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.111 0.889 9 N -0.371 5.371 10 C 0.059 3.941 11 H 0.090 0.910 12 C -0.207 4.207 13 C 0.019 3.981 14 H 0.100 0.900 15 N -0.351 5.351 16 C 0.331 3.669 17 O -0.425 6.425 18 C -0.196 4.196 19 H 0.147 0.853 20 C -0.170 4.170 21 C -0.076 4.076 22 H 0.143 0.857 23 C -0.102 4.102 24 C -0.170 4.170 25 N -0.210 5.210 26 C -0.102 4.102 27 N -0.168 5.168 28 H 0.258 0.742 29 C -0.218 4.218 30 H 0.071 0.929 31 H 0.196 0.804 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.244 0.756 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.187 0.813 38 H 0.225 0.775 39 H 0.106 0.894 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 19.694 4.681 3.826 20.601 hybrid contribution 0.895 0.641 -0.354 1.156 sum 20.589 5.322 3.472 21.547 Atomic orbital electron populations 1.69688 1.05096 1.25951 1.56913 1.24688 0.95247 0.97184 1.01803 0.86617 0.79076 0.85161 0.77976 1.20995 1.21530 1.20280 1.19119 0.80340 0.94903 1.43588 0.88942 1.42598 1.03961 1.01642 1.88921 1.21121 0.90354 0.89966 0.92684 0.90950 1.23852 0.98756 1.01898 0.96241 1.21810 0.98840 0.80420 0.97018 0.89969 1.45808 1.19111 1.08945 1.61251 1.19485 0.82643 0.86711 0.78048 1.90658 1.32869 1.75894 1.43127 1.22433 1.03668 0.90832 1.02658 0.85303 1.23192 0.97887 0.99827 0.96068 1.20121 0.93366 0.95045 0.99065 0.85693 1.20329 0.84654 1.01043 1.04202 1.22097 0.99808 0.95962 0.99170 1.70299 1.01957 1.24918 1.23874 1.24979 0.96794 0.92795 0.95658 1.43176 1.08388 1.28678 1.36547 0.74220 1.24116 0.96057 0.99375 1.02280 0.92904 0.80426 0.91467 0.89335 0.75555 0.87014 0.87218 0.81334 0.77484 0.89438 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.25 13.97 55.49 0.78 -27.47 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 20.81 27.73 -169.99 -4.71 16.10 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -5.76 6.52 56.52 0.37 -5.39 16 7 C -0.25 -6.70 10.46 -15.06 -0.16 -6.86 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 9 N -0.73 -16.16 4.82 -52.63 -0.25 -16.42 16 10 C 0.17 3.09 4.56 -67.12 -0.31 2.78 16 11 H 0.07 1.33 8.11 -51.93 -0.42 0.91 16 12 C -0.17 -2.65 7.62 -25.92 -0.20 -2.85 16 13 C 0.12 1.88 4.00 -67.12 -0.27 1.61 16 14 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 15 N -0.70 -10.84 4.33 -53.02 -0.23 -11.07 16 16 C 0.55 8.39 7.61 -10.99 -0.08 8.31 16 17 O -0.55 -9.68 16.20 5.55 0.09 -9.59 16 18 C -0.17 -2.22 5.72 -91.73 -0.52 -2.74 16 19 H 0.13 1.50 7.98 -51.93 -0.41 1.09 16 20 C -0.13 -1.54 9.76 -26.69 -0.26 -1.80 16 21 C -0.06 -0.63 5.84 -91.77 -0.54 -1.16 16 22 H 0.13 1.41 7.67 -51.93 -0.40 1.02 16 23 C 0.01 0.15 6.92 -81.60 -0.56 -0.42 16 24 C -0.02 -0.28 10.94 -17.81 -0.19 -0.47 16 25 N -0.49 -6.24 11.25 -14.67 -0.17 -6.41 16 26 C 0.18 1.63 13.04 -90.38 -1.18 0.45 16 27 N -0.56 -4.73 6.15 -10.30 -0.06 -4.80 16 28 H 0.42 2.18 8.96 -40.82 -0.37 1.81 16 29 C -0.18 -2.69 7.57 -25.92 -0.20 -2.89 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 31 H 0.36 7.81 4.22 -40.82 -0.17 7.63 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.41 6.42 7.82 -40.82 -0.32 6.10 16 35 H 0.11 1.18 7.94 -51.93 -0.41 0.77 16 36 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.17 1.91 8.06 -52.48 -0.42 1.49 16 38 H 0.21 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 LS Contribution 338.66 15.07 5.10 5.10 Total: -1.00 -33.79 338.66 -9.49 -43.28 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -5.47 Total: 17.20 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -4.56 Total: -5.93 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: 0.06 Total: -66.16 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.71 Total: 16.10 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.79 -9.49 -43.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022228564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.018 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds