Wall clock time and date at job start Fri Apr 10 2020 14:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99730 * 2 1 4 4 H 1.48494 * 109.47466 * 274.99270 * 3 2 1 5 5 H 1.48505 * 109.46804 * 34.99153 * 3 2 1 6 6 H 1.48497 * 109.47094 * 154.98657 * 3 2 1 7 7 C 1.38807 * 120.00568 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00447 * 185.06090 * 7 2 1 9 9 N 1.36938 * 120.00058 * 5.06410 * 7 2 1 10 10 C 1.47576 * 134.49613 * 173.47781 * 9 7 2 11 11 C 1.53949 * 86.11951 * 155.35923 * 10 9 7 12 12 N 1.46498 * 113.74595 * 137.95100 * 11 10 9 13 13 C 1.34771 * 120.00179 * 156.92193 * 12 11 10 14 14 O 1.21281 * 119.99957 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00111 * 180.02562 * 13 12 11 16 16 H 1.08995 * 109.47589 * 59.99350 * 15 13 12 17 17 C 1.53118 * 109.47633 * 180.02562 * 15 13 12 18 18 C 1.53349 * 109.52683 * 190.02078 * 17 15 13 19 19 C 1.50862 * 108.41078 * 310.01650 * 18 17 15 20 20 N 1.33576 * 128.03025 * 196.73263 * 19 18 17 21 21 C 1.30761 * 109.14614 * 179.57641 * 20 19 18 22 22 N 1.35317 * 108.76322 * 0.45996 * 21 20 19 23 23 H 0.96996 * 126.49104 * 179.85643 * 22 21 20 24 24 C 1.35030 * 123.99011 * 16.62763 * 19 18 17 25 25 C 1.50655 * 124.45133 * 0.23309 * 24 19 18 26 26 C 1.47818 * 134.45082 * 353.34451 * 9 7 2 27 27 H 0.97000 * 120.00404 * 359.97438 * 1 2 3 28 28 H 1.08996 * 113.77214 * 41.05942 * 10 9 7 29 29 H 1.09000 * 113.87219 * 269.67260 * 10 9 7 30 30 H 1.08997 * 113.74268 * 269.16076 * 11 10 9 31 31 H 0.97000 * 119.99965 * 336.93037 * 12 11 10 32 32 H 1.09001 * 109.46390 * 70.00356 * 17 15 13 33 33 H 1.09007 * 109.44856 * 310.03069 * 17 15 13 34 34 H 1.08999 * 109.67744 * 190.28352 * 18 17 15 35 35 H 1.09004 * 109.67803 * 69.74682 * 18 17 15 36 36 H 1.07996 * 125.61859 * 180.30470 * 21 20 19 37 37 H 1.09001 * 109.67404 * 136.08134 * 25 24 19 38 38 H 1.08994 * 109.68578 * 256.63129 * 25 24 19 39 39 H 1.09002 * 113.76654 * 90.38437 * 26 9 7 40 40 H 1.08993 * 113.83821 * 318.91745 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1075 -1.3947 5 1 1.5042 2.6199 0.8029 6 1 3.5964 1.4122 0.5920 7 6 2.0104 -1.2020 -0.0005 8 1 3.0872 -1.2039 0.0820 9 7 1.3298 -2.3857 -0.1057 10 6 1.7289 -3.7982 -0.2584 11 6 0.3713 -4.1420 0.3808 12 7 -0.3171 -5.2632 -0.2636 13 6 -1.2384 -5.9708 0.4196 14 8 -1.4978 -5.6792 1.5679 15 6 -1.9462 -7.1245 -0.2432 16 1 -1.2145 -7.8718 -0.5500 17 6 -2.9344 -7.7521 0.7438 18 6 -3.4696 -9.0680 0.1662 19 6 -3.9425 -8.8122 -1.2434 20 7 -4.7423 -9.5744 -1.9941 21 6 -4.9194 -8.9976 -3.1542 22 7 -4.2183 -7.8404 -3.1764 23 1 -4.1666 -7.2113 -3.9129 24 6 -3.6041 -7.7238 -1.9673 25 6 -2.7069 -6.6181 -1.4752 26 6 -0.1000 -2.7609 -0.1095 27 1 -0.4851 0.8400 0.0004 28 1 2.5862 -4.0810 0.3524 29 1 1.8206 -4.1211 -1.2954 30 1 0.4079 -4.2332 1.4664 31 1 -0.1098 -5.4962 -1.1821 32 1 -3.7641 -7.0657 0.9130 33 1 -2.4278 -7.9495 1.6886 34 1 -4.3018 -9.4238 0.7736 35 1 -2.6756 -9.8147 0.1572 36 1 -5.5234 -9.3826 -3.9624 37 1 -1.9987 -6.3446 -2.2573 38 1 -3.3084 -5.7504 -1.2042 39 1 -0.5474 -2.7767 -1.1033 40 1 -0.7000 -2.2170 0.6199 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031216087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:46 Heat of formation + Delta-G solvation = 65.982383 kcal Electronic energy + Delta-G solvation = -22653.671110 eV Core-core repulsion = 19277.554679 eV Total energy + Delta-G solvation = -3376.116431 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.148 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -42.47217 -39.83068 -37.80582 -36.07990 -33.68961 -33.23202 -31.86267 -30.03611 -29.37137 -27.40324 -24.87364 -24.41755 -23.50774 -22.35227 -21.73238 -20.20269 -19.66208 -18.94579 -18.04538 -16.86878 -16.78651 -15.82566 -15.65765 -15.16694 -14.85752 -14.52267 -14.08695 -13.94043 -13.81241 -13.66680 -13.41574 -12.88680 -12.64534 -12.11993 -11.96750 -11.64801 -11.49495 -11.44891 -11.16642 -11.01596 -10.90548 -10.81060 -10.48845 -10.07811 -10.07040 -10.03169 -9.58855 -9.44624 -8.84471 -8.47354 -8.34376 -6.95298 -5.83144 -3.16230 1.81228 2.71905 2.91662 3.00366 3.35690 3.39636 3.43815 3.47418 4.22660 4.41475 4.52895 4.59755 4.69276 4.97531 5.00674 5.07224 5.12979 5.25191 5.35028 5.41963 5.47152 5.54113 5.57365 5.75911 5.87507 5.95312 5.99803 6.13173 6.17574 6.22585 6.37844 6.52498 6.57715 6.72749 7.15536 7.19163 7.31181 7.51582 7.84268 7.87846 7.91656 8.51642 8.98196 9.64544 10.51671 11.34123 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.031144 B = 0.003055 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.840535 B = 9163.554618 C = 9591.309469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.607 5.607 10 C 0.112 3.888 11 C 0.090 3.910 12 N -0.715 5.715 13 C 0.515 3.485 14 O -0.537 6.537 15 C -0.100 4.100 16 H 0.100 0.900 17 C -0.099 4.099 18 C -0.034 4.034 19 C 0.005 3.995 20 N -0.487 5.487 21 C 0.174 3.826 22 N -0.560 5.560 23 H 0.420 0.580 24 C -0.022 4.022 25 C -0.035 4.035 26 C 0.157 3.843 27 H 0.255 0.745 28 H 0.049 0.951 29 H 0.034 0.966 30 H 0.110 0.890 31 H 0.395 0.605 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.207 0.793 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.029 0.971 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.288 -17.912 -7.095 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.354 4.354 8 H 0.100 0.900 9 N -0.334 5.334 10 C -0.015 4.015 11 C -0.015 4.015 12 N -0.366 5.366 13 C 0.300 3.700 14 O -0.414 6.414 15 C -0.122 4.122 16 H 0.118 0.882 17 C -0.137 4.137 18 C -0.072 4.072 19 C -0.125 4.125 20 N -0.206 5.206 21 C -0.109 4.109 22 N -0.163 5.163 23 H 0.258 0.742 24 C -0.138 4.138 25 C -0.073 4.073 26 C 0.031 3.969 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.128 0.872 31 H 0.229 0.771 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.224 0.776 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.047 0.953 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.777 -18.108 -5.946 20.585 hybrid contribution 0.817 1.923 -1.583 2.622 sum -6.960 -16.184 -7.529 19.159 Atomic orbital electron populations 1.69845 1.05096 1.25539 1.55800 1.24850 0.95694 0.97666 1.02000 0.86098 0.78774 0.83398 0.77499 1.21587 1.21608 1.20452 1.18989 0.90751 0.81702 1.44002 0.90010 1.45709 1.02421 1.00563 1.84676 1.22865 0.94785 0.86767 0.97067 1.23920 0.93322 0.85436 0.98777 1.46180 1.40873 1.33166 1.16337 1.20413 0.79743 0.83095 0.86705 1.90709 1.64163 1.68823 1.17695 1.21333 0.98258 0.96778 0.95796 0.88166 1.21438 0.98474 0.95818 0.97987 1.19983 1.00473 0.97567 0.89188 1.20586 1.01227 0.92965 0.97681 1.69978 1.17617 1.30377 1.02638 1.25025 1.01213 0.85842 0.98775 1.42946 1.38335 1.20810 1.14198 0.74175 1.20883 1.04309 1.01291 0.87342 1.20022 0.96250 0.94677 0.96375 1.22643 0.88053 0.88099 0.98101 0.93519 0.93293 0.94811 0.87164 0.77132 0.90873 0.89749 0.90119 0.90575 0.77614 0.90138 0.89484 0.95315 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 11.51 55.49 0.64 -26.51 16 2 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 21.95 29.56 -169.99 -5.02 16.92 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.31 10.69 -15.06 -0.16 -6.48 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.61 -15.33 3.70 -177.86 -0.66 -15.99 16 10 C 0.11 2.18 8.69 -2.97 -0.03 2.15 16 11 C 0.09 1.69 4.40 -70.13 -0.31 1.39 16 12 N -0.72 -10.19 5.28 -55.33 -0.29 -10.48 16 13 C 0.52 7.45 7.13 -10.99 -0.08 7.37 16 14 O -0.54 -10.07 15.44 5.56 0.09 -9.99 16 15 C -0.10 -1.05 2.51 -91.50 -0.23 -1.28 16 16 H 0.10 0.90 8.12 -51.93 -0.42 0.48 16 17 C -0.10 -1.08 4.64 -26.49 -0.12 -1.20 16 18 C -0.03 -0.35 6.30 -27.62 -0.17 -0.52 16 19 C 0.01 0.06 6.98 -82.89 -0.58 -0.52 16 20 N -0.49 -5.91 11.25 -10.74 -0.12 -6.03 16 21 C 0.17 1.50 13.05 -89.91 -1.17 0.33 16 22 N -0.56 -4.35 6.14 -10.28 -0.06 -4.42 16 23 H 0.42 1.92 8.96 -40.82 -0.37 1.55 16 24 C -0.02 -0.22 7.08 -81.85 -0.58 -0.80 16 25 C -0.03 -0.33 5.43 -27.70 -0.15 -0.48 16 26 C 0.16 3.67 7.24 -2.83 -0.02 3.65 16 27 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.03 0.60 8.11 -51.93 -0.42 0.18 16 30 H 0.11 2.27 7.51 -51.93 -0.39 1.88 16 31 H 0.40 4.44 8.39 -40.82 -0.34 4.10 16 32 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 33 H 0.08 0.95 7.76 -51.92 -0.40 0.55 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.21 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.08 0.62 7.90 -51.93 -0.41 0.21 16 38 H 0.09 0.91 8.11 -51.93 -0.42 0.49 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.93 7.37 -51.93 -0.38 1.55 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -35.52 330.94 -9.78 -45.31 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.64 Total: 2.82 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -3.70 Total: 3.38 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.50 Total: -63.43 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.52 -9.78 -45.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031216087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.288 kcal (2) G-P(sol) polarization free energy of solvation -35.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds