Wall clock time and date at job start Fri Apr 10 2020 14:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00011 * 2 1 4 4 H 1.48493 * 109.46989 * 274.98610 * 3 2 1 5 5 H 1.48495 * 109.47421 * 34.99358 * 3 2 1 6 6 H 1.48501 * 109.46846 * 154.98874 * 3 2 1 7 7 C 1.38810 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00401 * 187.31140 * 7 2 1 9 9 N 1.36942 * 119.99771 * 7.31026 * 7 2 1 10 10 C 1.46652 * 125.28617 * 175.31393 * 9 7 2 11 11 C 1.53514 * 107.05398 * 197.36224 * 10 9 7 12 12 H 1.08998 * 112.80845 * 210.79943 * 11 10 9 13 13 C 1.54786 * 109.68786 * 84.08479 * 11 10 9 14 14 C 1.54947 * 101.45649 * 212.93156 * 13 11 10 15 15 N 1.47341 * 104.90348 * 37.25266 * 14 13 11 16 16 C 1.34773 * 125.52378 * 156.77924 * 15 14 13 17 17 O 1.21286 * 119.99977 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00247 * 359.97410 * 16 15 14 19 19 N 1.46496 * 109.47299 * 180.02562 * 18 16 15 20 20 C 1.34949 * 126.03615 * 124.72327 * 19 18 16 21 21 C 1.35317 * 107.74290 * 179.83711 * 20 19 18 22 22 C 1.39869 * 107.92277 * 0.41729 * 21 20 19 23 23 N 1.30833 * 108.20279 * 359.74120 * 22 21 20 24 24 C 1.47258 * 108.95539 * 336.74495 * 15 14 13 25 25 H 1.09001 * 112.72763 * 236.14955 * 24 15 14 26 26 C 1.46493 * 125.29276 * 355.28862 * 9 7 2 27 27 H 0.97003 * 120.00006 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.92046 * 316.71524 * 10 9 7 29 29 H 1.09005 * 109.91961 * 78.00929 * 10 9 7 30 30 H 1.09007 * 111.02603 * 330.97405 * 13 11 10 31 31 H 1.08998 * 111.02478 * 94.84701 * 13 11 10 32 32 H 1.08993 * 110.35397 * 156.11259 * 14 13 11 33 33 H 1.09002 * 110.35122 * 278.39757 * 14 13 11 34 34 H 1.08995 * 109.47153 * 300.00614 * 18 16 15 35 35 H 1.09007 * 109.46877 * 59.99832 * 18 16 15 36 36 H 1.08003 * 126.12805 * 359.97438 * 20 19 18 37 37 H 1.08009 * 126.03802 * 180.15749 * 21 20 19 38 38 H 1.07992 * 125.89728 * 179.71581 * 22 21 20 39 39 H 1.09003 * 109.70986 * 297.78506 * 26 9 7 40 40 H 1.09001 * 109.71167 * 58.33101 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5045 2.6199 0.8029 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0835 -1.2061 0.1185 9 7 1.3337 -2.3832 -0.1520 10 6 1.9550 -3.7066 -0.2670 11 6 0.8953 -4.6523 -0.8495 12 1 1.0106 -5.6798 -0.5046 13 6 0.8830 -4.5343 -2.3929 14 6 -0.6143 -4.7788 -2.7082 15 7 -1.3451 -4.1171 -1.6132 16 6 -2.6200 -3.6840 -1.6721 17 8 -3.1246 -3.1510 -0.7066 18 6 -3.4185 -3.8619 -2.9377 19 7 -4.7632 -3.3123 -2.7480 20 6 -5.3543 -2.3761 -3.5196 21 6 -6.5885 -2.1452 -3.0151 22 6 -6.7537 -2.9613 -1.8913 23 7 -5.6603 -3.6614 -1.7302 24 6 -0.4571 -4.0066 -0.4437 25 1 -0.8785 -4.4669 0.4500 26 6 -0.1230 -2.5210 -0.2237 27 1 -0.4850 0.8401 0.0004 28 1 2.8152 -3.6563 -0.9347 29 1 2.2655 -4.0579 0.7170 30 1 1.1923 -3.5388 -2.7115 31 1 1.5096 -5.3009 -2.8487 32 1 -0.8782 -4.3300 -3.6657 33 1 -0.8303 -5.8471 -2.7170 34 1 -2.9243 -3.3381 -3.7558 35 1 -3.4897 -4.9232 -3.1762 36 1 -4.9209 -1.8986 -4.3860 37 1 -7.3157 -1.4500 -3.4081 38 1 -7.6321 -3.0056 -1.2645 39 1 -0.5711 -2.1774 0.7087 40 1 -0.5076 -1.9305 -1.0552 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075549189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:07:35 Heat of formation + Delta-G solvation = 68.029836 kcal Electronic energy + Delta-G solvation = -23675.361720 eV Core-core repulsion = 20299.334073 eV Total energy + Delta-G solvation = -3376.027647 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.12333 -41.36991 -39.31430 -36.63253 -34.44692 -33.92987 -32.24018 -31.03490 -30.57290 -28.91415 -27.74849 -26.39812 -23.99530 -22.63100 -22.06055 -21.88569 -20.93065 -20.06725 -18.96649 -18.29253 -18.15854 -17.10893 -16.61925 -16.51964 -16.16893 -15.40587 -15.37562 -15.05290 -14.75991 -14.46018 -14.33530 -14.14040 -13.70929 -13.61327 -13.37870 -13.19096 -13.16460 -12.92220 -12.73364 -12.61806 -12.14352 -11.90159 -11.83317 -11.54874 -11.51499 -11.44883 -11.11806 -10.73900 -10.29977 -9.64645 -9.49173 -8.93397 -7.88395 -5.26819 0.95239 1.40315 1.42947 1.52612 1.53477 1.58922 2.01409 2.03869 2.45580 3.26480 3.28397 3.62304 3.66445 3.74869 3.77120 3.99969 4.04610 4.10079 4.23972 4.32854 4.38770 4.50495 4.58188 4.70641 4.73802 4.87588 4.91096 4.95265 5.10314 5.16461 5.18882 5.21415 5.41747 5.51716 5.55271 5.74668 5.77546 6.11558 6.14973 6.56696 6.81553 7.03168 7.17365 7.75295 8.36522 9.19751 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.005154 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.637566 B = 5431.710595 C = 6660.125548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.283 1.283 5 H -0.302 1.302 6 H -0.261 1.261 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.623 5.623 10 C 0.135 3.865 11 C -0.093 4.093 12 H 0.133 0.867 13 C -0.114 4.114 14 C 0.095 3.905 15 N -0.607 5.607 16 C 0.498 3.502 17 O -0.571 6.571 18 C 0.128 3.872 19 N -0.375 5.375 20 C 0.050 3.950 21 C -0.283 4.283 22 C 0.026 3.974 23 N -0.324 5.324 24 C 0.119 3.881 25 H 0.065 0.935 26 C 0.203 3.797 27 H 0.241 0.759 28 H 0.057 0.943 29 H 0.018 0.982 30 H 0.051 0.949 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.159 0.841 35 H 0.146 0.854 36 H 0.211 0.789 37 H 0.172 0.828 38 H 0.201 0.799 39 H -0.028 1.028 40 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 -13.037 -13.958 19.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.209 1.209 5 H -0.229 1.229 6 H -0.185 1.185 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.350 5.350 10 C 0.010 3.990 11 C -0.112 4.112 12 H 0.151 0.849 13 C -0.152 4.152 14 C -0.026 4.026 15 N -0.342 5.342 16 C 0.286 3.714 17 O -0.448 6.448 18 C 0.003 3.997 19 N -0.158 5.158 20 C -0.095 4.095 21 C -0.312 4.312 22 C -0.161 4.161 23 N -0.145 5.145 24 C 0.014 3.986 25 H 0.083 0.917 26 C 0.077 3.923 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.177 0.823 35 H 0.163 0.837 36 H 0.227 0.773 37 H 0.190 0.810 38 H 0.217 0.783 39 H -0.009 1.009 40 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -4.385 -13.479 -12.770 19.078 hybrid contribution -0.303 2.235 0.470 2.304 sum -4.688 -11.245 -12.299 17.312 Atomic orbital electron populations 1.70344 1.06720 1.24910 1.58014 1.25790 0.96377 1.01551 1.02530 0.85038 0.77903 0.78882 0.77427 1.20949 1.22894 1.18512 1.19509 0.91821 0.83661 1.42200 0.89176 1.44466 1.01854 1.02761 1.85880 1.21372 0.95633 0.84281 0.97735 1.23018 0.90810 0.99706 0.97646 0.84900 1.22765 0.96107 1.03066 0.93222 1.22780 0.91117 0.99031 0.89630 1.48642 1.10836 1.59124 1.15585 1.21070 0.81370 0.78207 0.90759 1.90800 1.70387 1.43833 1.39814 1.21712 0.78024 1.04350 0.95579 1.48333 1.12654 1.32878 1.21941 1.23269 0.94703 0.92703 0.98803 1.21875 0.99524 1.08664 1.01121 1.24418 0.97157 0.96073 0.98432 1.77394 1.01315 1.26116 1.09712 1.22505 0.90862 0.96254 0.89003 0.91698 1.20758 0.84014 0.91225 0.96353 0.94981 0.92493 0.96402 0.93005 0.85562 0.88120 0.87293 0.82344 0.83662 0.77277 0.81015 0.78254 1.00949 0.96805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.21 10.28 21.65 0.22 -61.99 16 2 C -0.07 -4.16 5.47 84.86 0.46 -3.70 16 3 Si 0.98 47.42 29.56 68.60 2.03 49.45 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.24 -13.95 10.23 84.03 0.86 -13.09 16 8 H 0.09 4.83 7.84 -2.91 -0.02 4.81 16 9 N -0.62 -32.80 3.37 -698.97 -2.36 -35.16 16 10 C 0.13 5.19 6.50 86.52 0.56 5.75 16 11 C -0.09 -2.71 3.97 -9.23 -0.04 -2.74 16 12 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 13 C -0.11 -2.56 6.32 31.87 0.20 -2.36 16 14 C 0.09 1.82 6.66 86.88 0.58 2.40 16 15 N -0.61 -19.85 2.83 -784.26 -2.22 -22.06 16 16 C 0.50 18.30 7.59 87.66 0.67 18.96 16 17 O -0.57 -28.90 15.79 -3.05 -0.05 -28.94 16 18 C 0.13 3.03 6.00 85.63 0.51 3.55 16 19 N -0.37 -11.11 3.40 -351.80 -1.20 -12.31 16 20 C 0.05 1.19 11.45 83.54 0.96 2.15 16 21 C -0.28 -6.83 10.80 21.99 0.24 -6.59 16 22 C 0.03 0.73 12.03 85.24 1.02 1.76 16 23 N -0.32 -11.50 11.64 -57.03 -0.66 -12.16 16 24 C 0.12 4.72 3.81 45.91 0.17 4.89 16 25 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 26 C 0.20 11.01 4.63 86.67 0.40 11.41 16 27 H 0.24 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.06 2.01 7.95 -2.38 -0.02 2.00 16 29 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.05 1.57 7.93 -2.38 -0.02 1.55 16 31 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 1.37 7.49 -2.39 -0.02 1.36 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.16 2.46 7.77 -2.39 -0.02 2.44 16 35 H 0.15 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.21 3.06 8.06 -2.91 -0.02 3.03 16 37 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.20 4.40 8.06 -2.91 -0.02 4.38 16 39 H -0.03 -1.85 7.58 -2.39 -0.02 -1.87 16 40 H 0.01 0.85 6.83 -2.39 -0.02 0.83 16 Total: -1.00 -94.18 328.42 3.40 -90.78 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.03 Total: 10.00 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: 6.61 Total: 22.39 kcal Atomic # 7 Polarization: -137.47 SS G_CDS: -6.21 Total: -143.68 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.05 Total: -28.94 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -94.18 3.40 -90.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075549189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.812 kcal (2) G-P(sol) polarization free energy of solvation -94.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds