Wall clock time and date at job start Fri Apr 10 2020 14:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00214 * 2 1 4 4 H 1.48504 * 109.46893 * 240.00529 * 3 2 1 5 5 H 1.48496 * 109.46490 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47336 * 120.00109 * 3 2 1 7 7 C 1.38812 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00331 * 155.09585 * 7 2 1 9 9 N 1.36941 * 120.00055 * 335.08993 * 7 2 1 10 10 C 1.44320 * 116.35567 * 332.55533 * 9 7 2 11 11 C 1.51601 * 113.11519 * 187.25391 * 10 9 7 12 12 C 1.52877 * 111.55432 * 320.91325 * 11 10 9 13 13 H 1.09001 * 112.86308 * 294.18787 * 12 11 10 14 14 C 1.56200 * 106.67502 * 168.35125 * 12 11 10 15 15 N 1.47761 * 104.00426 * 286.46261 * 14 12 11 16 16 C 1.34774 * 125.82081 * 154.06155 * 15 14 12 17 17 O 1.21577 * 120.00012 * 359.71647 * 16 15 14 18 18 C 1.47717 * 120.00290 * 179.43761 * 16 15 14 19 19 C 1.41495 * 126.51659 * 180.27837 * 18 16 15 20 20 C 1.35371 * 105.50115 * 179.97438 * 19 18 16 21 21 N 1.35038 * 107.22805 * 0.02562 * 20 19 18 22 22 H 0.96999 * 124.88840 * 180.02562 * 21 20 19 23 23 N 1.28469 * 110.22908 * 359.72134 * 21 20 19 24 24 C 1.47613 * 108.35938 * 333.79537 * 15 14 12 25 25 C 1.53561 * 106.34659 * 0.86404 * 24 15 14 26 26 H 1.08993 * 108.71478 * 270.18621 * 25 24 15 27 27 C 1.43993 * 116.35166 * 152.52562 * 9 7 2 28 28 H 0.96996 * 120.00288 * 359.97438 * 1 2 3 29 29 H 1.09001 * 108.75066 * 308.18901 * 10 9 7 30 30 H 1.08994 * 108.75675 * 66.31335 * 10 9 7 31 31 H 1.09000 * 109.06232 * 81.44441 * 11 10 9 32 32 H 1.08992 * 109.06587 * 200.45139 * 11 10 9 33 33 H 1.08998 * 110.62739 * 167.80471 * 14 12 11 34 34 H 1.09003 * 110.48808 * 45.04650 * 14 12 11 35 35 H 1.07998 * 127.25709 * 359.97438 * 19 18 16 36 36 H 1.08000 * 126.38649 * 179.97438 * 20 19 18 37 37 H 1.09008 * 110.08116 * 120.08786 * 24 15 14 38 38 H 1.09000 * 110.08127 * 241.64468 * 24 15 14 39 39 H 1.09006 * 108.15899 * 60.79114 * 27 9 7 40 40 H 1.09000 * 108.00286 * 304.10405 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0150 -1.2455 -0.3944 9 7 1.4210 -2.3332 0.4985 10 6 0.4151 -2.1366 1.5145 11 6 -0.0621 -3.4334 2.1382 12 6 -0.1925 -4.5436 1.0953 13 1 -0.9723 -4.3446 0.3601 14 6 -0.3908 -5.8776 1.8832 15 7 0.9465 -6.1650 2.4421 16 6 1.1991 -6.8872 3.5516 17 8 0.2800 -7.3633 4.1894 18 6 2.5929 -7.1055 3.9894 19 6 3.0141 -7.8412 5.1223 20 6 4.3658 -7.7675 5.1194 21 7 4.7239 -7.0299 4.0464 22 1 5.6373 -6.8166 3.7996 23 7 3.6808 -6.6567 3.3959 24 6 1.9589 -5.5317 1.5745 25 6 1.1846 -4.8160 0.4581 26 1 1.0463 -5.5093 -0.3714 27 6 1.8742 -3.5851 -0.0499 28 1 -0.4850 0.8400 0.0004 29 1 0.8283 -1.5020 2.2985 30 1 -0.4389 -1.6272 1.0683 31 1 0.6504 -3.7445 2.9021 32 1 -1.0336 -3.2681 2.6039 33 1 -0.7039 -6.6772 1.2118 34 1 -1.1183 -5.7433 2.6838 35 1 2.3890 -8.3536 5.8386 36 1 5.0334 -8.2146 5.8412 37 1 2.5435 -4.8107 2.1461 38 1 2.6141 -6.2912 1.1479 39 1 2.9396 -3.6819 0.1594 40 1 1.7451 -3.5455 -1.1315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087893691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:07:08 Heat of formation + Delta-G solvation = 78.717957 kcal Electronic energy + Delta-G solvation = -23721.052253 eV Core-core repulsion = 20345.488078 eV Total energy + Delta-G solvation = -3375.564175 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.72312 -40.09242 -38.09553 -35.54085 -32.70214 -31.89760 -31.39717 -30.85298 -30.11405 -27.82317 -25.65336 -24.35548 -22.89789 -21.85372 -21.79256 -21.20266 -19.24312 -18.44489 -17.68758 -17.04326 -16.75607 -16.02249 -15.42266 -15.11372 -14.83646 -14.12547 -13.91668 -13.82552 -13.74092 -13.37030 -13.00745 -12.89711 -12.56856 -12.36998 -12.21010 -11.67506 -11.19399 -11.08193 -11.01231 -10.71271 -10.44696 -10.23551 -10.13869 -10.04148 -9.68764 -9.57099 -9.55648 -9.47919 -9.34845 -8.47997 -8.36228 -6.56760 -5.58689 -3.23627 1.55801 2.01390 2.69776 3.18366 3.40495 3.46773 3.48811 3.49164 4.33290 4.52901 4.66909 4.81619 4.91642 5.13636 5.22515 5.37169 5.48812 5.49444 5.59725 5.65401 5.72360 5.89494 5.96360 6.08410 6.09079 6.17545 6.29166 6.41791 6.45977 6.63071 6.66970 6.76042 6.82983 6.87668 6.93414 7.36647 7.63179 7.73753 7.84952 7.97674 8.29346 8.57174 9.32927 10.03626 10.33128 11.26894 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.021710 B = 0.004449 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.412218 B = 6292.673488 C = 7001.044184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.007 3.993 3 Si 0.898 3.102 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.269 4.269 8 H 0.064 0.936 9 N -0.585 5.585 10 C 0.156 3.844 11 C -0.121 4.121 12 C -0.082 4.082 13 H 0.102 0.898 14 C 0.107 3.893 15 N -0.601 5.601 16 C 0.614 3.386 17 O -0.543 6.543 18 C -0.008 4.008 19 C -0.181 4.181 20 C -0.019 4.019 21 N -0.385 5.385 22 H 0.446 0.554 23 N -0.248 5.248 24 C 0.121 3.879 25 C -0.102 4.102 26 H 0.071 0.929 27 C 0.177 3.823 28 H 0.253 0.747 29 H 0.015 0.985 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.162 0.838 36 H 0.184 0.816 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.014 0.986 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.984 -15.277 6.992 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.193 4.193 3 Si 0.727 3.273 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.399 4.399 8 H 0.082 0.918 9 N -0.309 5.309 10 C 0.031 3.969 11 C -0.159 4.159 12 C -0.102 4.102 13 H 0.120 0.880 14 C -0.015 4.015 15 N -0.334 5.334 16 C 0.401 3.599 17 O -0.420 6.420 18 C -0.169 4.169 19 C -0.210 4.210 20 C -0.163 4.163 21 N -0.099 5.099 22 H 0.290 0.710 23 N -0.085 5.085 24 C -0.001 4.001 25 C -0.121 4.121 26 H 0.090 0.910 27 C 0.051 3.949 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.179 0.821 36 H 0.201 0.799 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.032 0.968 40 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 6.665 -14.900 6.523 17.578 hybrid contribution 0.892 0.532 0.654 1.227 sum 7.557 -14.368 7.177 17.750 Atomic orbital electron populations 1.69983 1.05480 1.25446 1.52268 1.24945 0.94931 0.98444 1.00985 0.86440 0.79187 0.83522 0.78117 1.20857 1.21693 1.21205 1.19085 0.96193 0.86721 1.37882 0.91814 1.42663 1.45423 1.00992 1.41842 1.20234 0.94703 0.92082 0.89848 1.21583 1.00439 0.96612 0.97231 1.22291 0.97202 0.93262 0.97405 0.88006 1.22740 0.84234 0.97026 0.97481 1.48504 1.09310 1.50724 1.24855 1.16481 0.85779 0.78201 0.79431 1.90775 1.44690 1.51245 1.55252 1.21942 0.92688 1.04397 0.97873 1.21787 0.93776 1.04994 1.00398 1.22930 0.96863 1.01609 0.94897 1.43460 1.08941 1.38184 1.19330 0.70957 1.73772 0.93465 1.19928 1.21299 1.22178 0.90410 0.96312 0.91192 1.21559 0.95693 0.98108 0.96783 0.91007 1.19329 0.95365 0.84520 0.95692 0.93669 0.96669 0.90180 0.93376 0.92535 0.91533 0.90244 0.82071 0.79915 0.90383 0.91334 0.96814 0.95895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 10.92 55.49 0.61 -24.93 16 2 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 3 Si 0.90 21.72 29.62 -169.99 -5.04 16.69 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.27 -7.40 9.26 -15.06 -0.14 -7.54 16 8 H 0.06 1.73 7.94 -52.48 -0.42 1.31 16 9 N -0.58 -14.58 3.23 -179.58 -0.58 -15.16 16 10 C 0.16 3.77 5.14 -5.91 -0.03 3.74 16 11 C -0.12 -2.35 4.98 -27.50 -0.14 -2.48 16 12 C -0.08 -1.40 3.77 -88.36 -0.33 -1.73 16 13 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 14 C 0.11 1.65 6.25 -1.63 -0.01 1.64 16 15 N -0.60 -9.79 2.80 -170.57 -0.48 -10.26 16 16 C 0.61 10.47 7.86 -12.39 -0.10 10.37 16 17 O -0.54 -10.45 17.18 5.30 0.09 -10.35 16 18 C -0.01 -0.12 6.98 -82.76 -0.58 -0.69 16 19 C -0.18 -2.10 10.81 -39.36 -0.43 -2.53 16 20 C -0.02 -0.15 12.02 -17.16 -0.21 -0.36 16 21 N -0.39 -3.44 6.83 30.47 0.21 -3.23 16 22 H 0.45 2.28 8.96 -190.44 -1.71 0.57 16 23 N -0.25 -3.27 9.80 33.42 0.33 -2.94 16 24 C 0.12 1.93 4.21 -3.14 -0.01 1.92 16 25 C -0.10 -1.72 2.68 -91.23 -0.24 -1.97 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 27 C 0.18 3.68 5.67 -6.88 -0.04 3.64 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.08 2.18 5.74 -51.93 -0.30 1.88 16 31 H 0.05 0.96 6.77 -51.93 -0.35 0.60 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.25 7.93 -51.93 -0.41 0.84 16 35 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.08 1.39 7.42 -51.92 -0.39 1.00 16 38 H 0.07 1.01 7.77 -51.93 -0.40 0.60 16 39 H 0.01 0.29 7.78 -51.93 -0.40 -0.11 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 319.85 15.07 4.82 4.82 Total: -1.00 -33.46 319.85 -9.27 -42.73 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.89 Total: -1.47 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -2.34 Total: 4.11 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.08 Total: -56.52 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.04 Total: 16.69 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.46 -9.27 -42.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087893691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.451 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds