Wall clock time and date at job start Fri Apr 10 2020 14:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00214 * 2 1 4 4 H 1.48504 * 109.46893 * 240.00529 * 3 2 1 5 5 H 1.48496 * 109.46490 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47336 * 120.00109 * 3 2 1 7 7 C 1.38812 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00331 * 155.09585 * 7 2 1 9 9 N 1.36941 * 120.00055 * 335.08993 * 7 2 1 10 10 C 1.44320 * 116.35567 * 332.55533 * 9 7 2 11 11 C 1.51601 * 113.11519 * 187.25391 * 10 9 7 12 12 C 1.52877 * 111.55432 * 320.91325 * 11 10 9 13 13 H 1.09001 * 112.86308 * 294.18787 * 12 11 10 14 14 C 1.56200 * 106.67502 * 168.35125 * 12 11 10 15 15 N 1.47761 * 104.00426 * 286.46261 * 14 12 11 16 16 C 1.34774 * 125.82081 * 154.06155 * 15 14 12 17 17 O 1.21577 * 120.00012 * 359.71647 * 16 15 14 18 18 C 1.47717 * 120.00290 * 179.43761 * 16 15 14 19 19 C 1.41495 * 126.51659 * 180.27837 * 18 16 15 20 20 C 1.35371 * 105.50115 * 179.97438 * 19 18 16 21 21 N 1.35038 * 107.22805 * 0.02562 * 20 19 18 22 22 H 0.96999 * 124.88840 * 180.02562 * 21 20 19 23 23 N 1.28469 * 110.22908 * 359.72134 * 21 20 19 24 24 C 1.47613 * 108.35938 * 333.79537 * 15 14 12 25 25 C 1.53561 * 106.34659 * 0.86404 * 24 15 14 26 26 H 1.08993 * 108.71478 * 270.18621 * 25 24 15 27 27 C 1.43993 * 116.35166 * 152.52562 * 9 7 2 28 28 H 0.96996 * 120.00288 * 359.97438 * 1 2 3 29 29 H 1.09001 * 108.75066 * 308.18901 * 10 9 7 30 30 H 1.08994 * 108.75675 * 66.31335 * 10 9 7 31 31 H 1.09000 * 109.06232 * 81.44441 * 11 10 9 32 32 H 1.08992 * 109.06587 * 200.45139 * 11 10 9 33 33 H 1.08998 * 110.62739 * 167.80471 * 14 12 11 34 34 H 1.09003 * 110.48808 * 45.04650 * 14 12 11 35 35 H 1.07998 * 127.25709 * 359.97438 * 19 18 16 36 36 H 1.08000 * 126.38649 * 179.97438 * 20 19 18 37 37 H 1.09008 * 110.08116 * 120.08786 * 24 15 14 38 38 H 1.09000 * 110.08127 * 241.64468 * 24 15 14 39 39 H 1.09006 * 108.15899 * 60.79114 * 27 9 7 40 40 H 1.09000 * 108.00286 * 304.10405 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0150 -1.2455 -0.3944 9 7 1.4210 -2.3332 0.4985 10 6 0.4151 -2.1366 1.5145 11 6 -0.0621 -3.4334 2.1382 12 6 -0.1925 -4.5436 1.0953 13 1 -0.9723 -4.3446 0.3601 14 6 -0.3908 -5.8776 1.8832 15 7 0.9465 -6.1650 2.4421 16 6 1.1991 -6.8872 3.5516 17 8 0.2800 -7.3633 4.1894 18 6 2.5929 -7.1055 3.9894 19 6 3.0141 -7.8412 5.1223 20 6 4.3658 -7.7675 5.1194 21 7 4.7239 -7.0299 4.0464 22 1 5.6373 -6.8166 3.7996 23 7 3.6808 -6.6567 3.3959 24 6 1.9589 -5.5317 1.5745 25 6 1.1846 -4.8160 0.4581 26 1 1.0463 -5.5093 -0.3714 27 6 1.8742 -3.5851 -0.0499 28 1 -0.4850 0.8400 0.0004 29 1 0.8283 -1.5020 2.2985 30 1 -0.4389 -1.6272 1.0683 31 1 0.6504 -3.7445 2.9021 32 1 -1.0336 -3.2681 2.6039 33 1 -0.7039 -6.6772 1.2118 34 1 -1.1183 -5.7433 2.6838 35 1 2.3890 -8.3536 5.8386 36 1 5.0334 -8.2146 5.8412 37 1 2.5435 -4.8107 2.1461 38 1 2.6141 -6.2912 1.1479 39 1 2.9396 -3.6819 0.1594 40 1 1.7451 -3.5455 -1.1315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087893691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:07:07 Heat of formation + Delta-G solvation = 56.130754 kcal Electronic energy + Delta-G solvation = -23722.031707 eV Core-core repulsion = 20345.488078 eV Total energy + Delta-G solvation = -3376.543630 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.56155 -41.46255 -39.52851 -37.26488 -34.29257 -33.25815 -32.73559 -32.04430 -31.49810 -29.30612 -27.23809 -25.92019 -24.38958 -23.42328 -22.81941 -22.44342 -20.30875 -19.56066 -19.09787 -18.82856 -17.94342 -17.30470 -16.87015 -16.55983 -16.31011 -15.77571 -15.55801 -15.29653 -14.79656 -14.61868 -14.54721 -14.12436 -13.99507 -13.77827 -13.66531 -13.28503 -12.99088 -12.86640 -12.52817 -12.22897 -12.07054 -12.00128 -11.71094 -11.49349 -11.38018 -11.20612 -11.13233 -10.52511 -10.45308 -10.14128 -9.66908 -8.64477 -7.67733 -5.37926 0.52903 1.25431 1.45812 1.49529 1.55831 1.78389 2.23755 2.33357 2.52172 3.22930 3.28057 3.50671 3.60349 3.76232 3.85003 4.03516 4.17430 4.21106 4.35876 4.48265 4.56420 4.65540 4.72712 4.76642 4.79249 4.82418 4.92798 5.00778 5.05902 5.09271 5.20216 5.28739 5.33601 5.39989 5.43764 5.69795 5.94214 6.19513 6.40738 6.45696 6.82122 7.09097 7.23145 8.06393 8.25892 9.13693 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.021710 B = 0.004449 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.412218 B = 6292.673488 C = 7001.044184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.041 4.041 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.286 4.286 8 H 0.063 0.937 9 N -0.596 5.596 10 C 0.166 3.834 11 C -0.109 4.109 12 C -0.079 4.079 13 H 0.106 0.894 14 C 0.114 3.886 15 N -0.604 5.604 16 C 0.609 3.391 17 O -0.575 6.575 18 C -0.043 4.043 19 C -0.208 4.208 20 C 0.016 3.984 21 N -0.369 5.369 22 H 0.463 0.537 23 N -0.272 5.272 24 C 0.138 3.862 25 C -0.098 4.098 26 H 0.101 0.899 27 C 0.176 3.824 28 H 0.250 0.750 29 H -0.018 1.018 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.164 0.836 36 H 0.235 0.765 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.018 0.982 40 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.791 -16.881 7.332 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.239 4.239 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.417 4.417 8 H 0.081 0.919 9 N -0.321 5.321 10 C 0.041 3.959 11 C -0.147 4.147 12 C -0.098 4.098 13 H 0.125 0.875 14 C -0.008 4.008 15 N -0.336 5.336 16 C 0.397 3.603 17 O -0.454 6.454 18 C -0.202 4.202 19 C -0.236 4.236 20 C -0.129 4.129 21 N -0.086 5.086 22 H 0.311 0.689 23 N -0.110 5.110 24 C 0.015 3.985 25 C -0.118 4.118 26 H 0.120 0.880 27 C 0.050 3.950 28 H 0.060 0.940 29 H 0.000 1.000 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.182 0.818 36 H 0.252 0.748 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.036 0.964 40 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 8.507 -16.511 6.836 19.792 hybrid contribution 0.440 1.019 0.578 1.252 sum 8.947 -15.492 7.414 19.366 Atomic orbital electron populations 1.70134 1.06705 1.25792 1.53339 1.25674 0.95688 1.01348 1.01160 0.85474 0.77944 0.79660 0.78244 1.19728 1.21805 1.21154 1.19407 0.96424 0.88132 1.37715 0.91913 1.42890 1.45241 1.01967 1.41959 1.19964 0.93291 0.93883 0.88771 1.21419 1.00471 0.95255 0.97559 1.22242 0.97553 0.93099 0.96910 0.87542 1.22710 0.84020 0.96562 0.97480 1.48564 1.09563 1.50586 1.24929 1.16895 0.86760 0.77618 0.79020 1.90738 1.45963 1.52606 1.56093 1.21814 0.91934 1.06697 0.99762 1.22041 0.95584 1.05813 1.00187 1.23592 0.96140 0.98999 0.94151 1.43592 1.09042 1.36995 1.18944 0.68852 1.73668 0.94045 1.20825 1.22427 1.21969 0.90069 0.96084 0.90342 1.21496 0.95224 0.96887 0.98156 0.88037 1.19417 0.95890 0.84504 0.95179 0.94047 0.99965 0.93103 0.93954 0.91511 0.89041 0.90671 0.81795 0.74841 0.92470 0.89653 0.96402 0.96623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.93 10.92 21.65 0.24 -53.69 16 2 C -0.04 -2.33 4.94 84.86 0.42 -1.91 16 3 Si 0.96 45.19 29.62 68.60 2.03 47.22 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.29 -15.99 9.26 84.03 0.78 -15.22 16 8 H 0.06 3.44 7.94 -2.91 -0.02 3.42 16 9 N -0.60 -30.23 3.23 -722.07 -2.33 -32.56 16 10 C 0.17 8.29 5.14 86.33 0.44 8.73 16 11 C -0.11 -4.28 4.98 30.09 0.15 -4.13 16 12 C -0.08 -2.60 3.77 -9.33 -0.04 -2.63 16 13 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 14 C 0.11 3.33 6.25 87.25 0.55 3.88 16 15 N -0.60 -19.07 2.80 -811.82 -2.28 -21.35 16 16 C 0.61 20.54 7.86 86.75 0.68 21.22 16 17 O -0.57 -22.20 17.18 -3.96 -0.07 -22.27 16 18 C -0.04 -1.22 6.98 42.46 0.30 -0.92 16 19 C -0.21 -4.46 10.81 22.41 0.24 -4.22 16 20 C 0.02 0.20 12.02 83.54 1.00 1.20 16 21 N -0.37 -5.49 6.83 -57.50 -0.39 -5.88 16 22 H 0.46 3.16 8.96 -219.99 -1.97 1.18 16 23 N -0.27 -6.71 9.80 -48.18 -0.47 -7.18 16 24 C 0.14 4.20 4.21 86.35 0.36 4.56 16 25 C -0.10 -3.18 2.68 -11.19 -0.03 -3.21 16 26 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 27 C 0.18 7.22 5.67 85.87 0.49 7.70 16 28 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 29 H -0.02 -0.98 8.12 -2.39 -0.02 -1.00 16 30 H 0.05 2.89 5.74 -2.39 -0.01 2.88 16 31 H 0.04 1.70 6.77 -2.39 -0.02 1.69 16 32 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.07 2.29 7.93 -2.39 -0.02 2.27 16 35 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 36 H 0.24 0.35 8.06 -2.91 -0.02 0.33 16 37 H 0.06 2.00 7.42 -2.38 -0.02 1.98 16 38 H 0.09 2.33 7.77 -2.39 -0.02 2.31 16 39 H 0.02 0.73 7.78 -2.38 -0.02 0.71 16 40 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -74.94 319.85 1.17 -73.78 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -0.91 Total: 6.86 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 5.35 Total: 15.08 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -5.23 Total: -120.66 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.07 Total: -22.27 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -74.94 1.17 -73.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087893691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.907 kcal (2) G-P(sol) polarization free energy of solvation -74.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds