Wall clock time and date at job start Fri Apr 10 2020 14:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38267 * 119.94226 * 2 1 4 4 C 1.38141 * 120.05668 * 180.02562 * 3 2 1 5 5 C 1.38733 * 119.94181 * 359.97438 * 4 3 2 6 6 O 1.35901 * 120.05645 * 180.02562 * 5 4 3 7 7 C 1.42894 * 117.00486 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47495 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99958 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00331 * 180.02562 * 8 7 6 11 11 C 1.47579 * 134.49442 * 179.97438 * 10 8 7 12 12 C 1.53953 * 86.11613 * 155.35662 * 11 10 8 13 13 O 1.42891 * 113.74249 * 269.15295 * 12 11 10 14 14 C 1.50704 * 113.73748 * 137.95211 * 12 11 10 15 15 H 1.07998 * 120.00120 * 3.90458 * 14 12 11 16 16 C 1.37883 * 119.99782 * 183.91187 * 14 12 11 17 17 N 1.31513 * 120.00053 * 185.23007 * 16 14 12 18 18 Si 1.86796 * 119.99938 * 5.22387 * 16 14 12 19 19 H 1.48495 * 109.47550 * 270.00395 * 18 16 14 20 20 H 1.48511 * 109.47116 * 30.00543 * 18 16 14 21 21 H 1.48499 * 109.47060 * 149.99973 * 18 16 14 22 22 C 1.47582 * 134.49131 * 359.97438 * 10 8 7 23 23 C 1.38731 * 119.89044 * 0.27572 * 5 4 3 24 24 C 1.38147 * 119.94246 * 359.42390 * 23 5 4 25 25 H 1.08994 * 109.47294 * 90.00271 * 1 2 3 26 26 H 1.09006 * 109.46856 * 210.00394 * 1 2 3 27 27 H 1.08999 * 109.47175 * 330.00032 * 1 2 3 28 28 H 1.08000 * 119.97300 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.02938 * 180.02562 * 4 3 2 30 30 H 1.08998 * 109.47442 * 60.00019 * 7 6 5 31 31 H 1.09008 * 109.46872 * 300.00085 * 7 6 5 32 32 H 1.08998 * 113.77112 * 41.06103 * 11 10 8 33 33 H 1.09000 * 113.87384 * 269.66796 * 11 10 8 34 34 H 0.96707 * 113.99791 * 172.50486 * 13 12 11 35 35 H 0.97008 * 119.99681 * 354.94910 * 17 16 14 36 36 H 1.09003 * 113.77322 * 90.33860 * 22 10 8 37 37 H 1.09009 * 113.76717 * 318.93870 * 22 10 8 38 38 H 1.08000 * 120.02911 * 179.72505 * 23 5 4 39 39 H 1.07993 * 119.97087 * 180.27866 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2009 -0.0005 5 6 4.2734 0.0001 -0.0005 6 8 5.6324 0.0001 -0.0005 7 6 6.2812 -1.2730 0.0000 8 6 7.7752 -1.0756 0.0006 9 8 8.2387 0.0452 0.0000 10 7 8.5963 -2.1443 0.0007 11 6 10.0612 -2.3232 0.0006 12 6 9.7885 -3.6963 0.6412 13 8 9.7717 -3.6716 2.0698 14 6 10.6412 -4.8064 0.0828 15 1 11.4038 -4.5854 -0.6493 16 6 10.4476 -6.1041 0.5065 17 7 11.2572 -7.0568 0.0983 18 14 9.0356 -6.5091 1.6603 19 1 9.4934 -6.3811 3.0671 20 1 7.9125 -5.5681 1.4177 21 1 8.5779 -7.9001 1.4133 22 6 8.3915 -3.6059 0.0008 23 6 3.5786 -1.2007 -0.0058 24 6 2.1972 -1.1981 0.0010 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6558 2.1326 -0.0004 29 1 4.1171 2.1370 -0.0001 30 1 5.9884 -1.8305 -0.8897 31 1 5.9883 -1.8297 0.8903 32 1 10.5885 -1.6298 0.6558 33 1 10.4984 -2.3825 -0.9961 34 1 9.4889 -4.5032 2.4743 35 1 11.9449 -6.8610 -0.5573 36 1 8.3364 -4.0419 -0.9967 37 1 7.5856 -3.9365 0.6561 38 1 4.1173 -2.1368 -0.0103 39 1 1.6559 -2.1326 0.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186820187.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:15 Heat of formation + Delta-G solvation = -50.456345 kcal Electronic energy + Delta-G solvation = -22564.137466 eV Core-core repulsion = 19052.960459 eV Total energy + Delta-G solvation = -3511.177006 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.46856 -39.71850 -38.15628 -37.13453 -34.49709 -32.69081 -32.25712 -31.24771 -29.96472 -27.85803 -26.31740 -25.62687 -24.74294 -22.92280 -21.41737 -20.20690 -18.80301 -18.43151 -18.05973 -16.76908 -16.36113 -16.23824 -15.80804 -15.53432 -15.01725 -14.82377 -14.46441 -14.09496 -13.82046 -13.66848 -13.54119 -13.16146 -13.03104 -12.59815 -12.38365 -12.26190 -12.13159 -12.02878 -11.72551 -11.47374 -11.03716 -10.97291 -10.86899 -10.47854 -10.02262 -9.60064 -9.51487 -9.19166 -9.08700 -8.65113 -8.20965 -8.16318 -6.78451 -4.55124 1.15441 1.23967 2.57109 2.85593 3.02834 3.05924 3.24836 3.56458 3.64363 4.10177 4.47459 4.62742 4.65602 4.72899 4.75308 4.94833 5.02317 5.06588 5.09025 5.15935 5.33378 5.36935 5.47180 5.52459 5.67103 5.84951 5.87965 5.92887 6.09616 6.11937 6.18804 6.22978 6.27596 6.41024 6.50642 6.60569 7.26444 7.40624 7.99714 8.10103 8.38403 8.42469 8.52453 9.20696 10.57565 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023449 B = 0.003477 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.816223 B = 8051.183279 C = 8927.229838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.131 4.131 3 C -0.081 4.081 4 C -0.147 4.147 5 C 0.128 3.872 6 O -0.290 6.290 7 C 0.048 3.952 8 C 0.533 3.467 9 O -0.537 6.537 10 N -0.633 5.633 11 C 0.132 3.868 12 C 0.198 3.802 13 O -0.554 6.554 14 C -0.611 4.611 15 H 0.073 0.927 16 C 0.034 3.966 17 N -0.890 5.890 18 Si 1.032 2.968 19 H -0.275 1.275 20 H -0.269 1.269 21 H -0.279 1.279 22 C 0.055 3.945 23 C -0.207 4.207 24 C -0.079 4.079 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.355 0.645 35 H 0.275 0.725 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.129 0.871 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.091 8.453 -0.521 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.131 4.131 3 C -0.099 4.099 4 C -0.165 4.165 5 C 0.082 3.918 6 O -0.202 6.202 7 C -0.030 4.030 8 C 0.320 3.680 9 O -0.414 6.414 10 N -0.369 5.369 11 C 0.010 3.990 12 C 0.157 3.843 13 O -0.363 6.363 14 C -0.649 4.649 15 H 0.091 0.909 16 C -0.174 4.174 17 N -0.522 5.522 18 Si 0.861 3.139 19 H -0.202 1.202 20 H -0.195 1.195 21 H -0.205 1.205 22 C -0.068 4.068 23 C -0.226 4.226 24 C -0.097 4.097 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.146 0.854 29 H 0.150 0.850 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.205 0.795 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.147 0.853 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.307 8.751 0.231 21.199 hybrid contribution 0.505 0.266 -0.907 1.072 sum -18.802 9.018 -0.676 20.864 Atomic orbital electron populations 1.20705 0.91131 1.02560 1.02065 1.19828 0.96187 0.93083 1.04047 1.20831 0.92851 0.97768 0.98460 1.20451 0.93719 0.96446 1.05918 1.19119 0.82218 0.94373 0.96058 1.86151 1.15993 1.29787 1.88246 1.22418 0.91723 0.85261 1.03623 1.19499 0.86897 0.84093 0.77477 1.90699 1.77165 1.23098 1.50452 1.50056 1.08984 1.06346 1.71492 1.23300 0.79299 0.95914 1.00456 1.20494 0.90679 0.94074 0.79057 1.86468 1.90666 1.38757 1.20448 1.22259 1.21670 0.92136 1.28790 0.90914 1.25826 1.00211 0.92507 0.98813 1.70764 1.17232 1.35593 1.28604 0.84282 0.75883 0.77345 0.76419 1.20165 1.19479 1.20508 1.24856 1.02453 0.77198 1.02264 1.21313 0.95519 0.97166 1.08597 1.20825 0.93193 0.97736 0.97959 0.91504 0.91753 0.91746 0.85420 0.84999 0.89199 0.89190 0.90518 0.88872 0.79472 0.91494 0.88593 0.90810 0.85294 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.13 -1.26 5.88 -104.60 -0.62 -1.87 16 3 C -0.08 -0.81 9.69 -39.61 -0.38 -1.19 16 4 C -0.15 -1.77 9.99 -39.43 -0.39 -2.17 16 5 C 0.13 1.75 6.69 -39.22 -0.26 1.49 16 6 O -0.29 -4.72 9.67 -39.34 -0.38 -5.10 16 7 C 0.05 0.73 4.97 36.00 0.18 0.91 16 8 C 0.53 10.31 8.13 -10.99 -0.09 10.22 16 9 O -0.54 -12.31 17.23 -14.35 -0.25 -12.56 16 10 N -0.63 -12.29 3.61 -178.30 -0.64 -12.93 16 11 C 0.13 2.70 8.23 -2.97 -0.02 2.68 16 12 C 0.20 4.35 1.06 -90.84 -0.10 4.25 16 13 O -0.55 -12.46 13.42 -35.23 -0.47 -12.94 16 14 C -0.61 -15.27 9.04 -34.44 -0.31 -15.58 16 15 H 0.07 1.95 8.04 -52.49 -0.42 1.52 16 16 C 0.03 0.88 5.47 -17.82 -0.10 0.78 16 17 N -0.89 -24.70 13.70 55.43 0.76 -23.94 16 18 Si 1.03 21.17 24.79 -169.99 -4.21 16.96 16 19 H -0.27 -5.39 6.95 56.52 0.39 -5.00 16 20 H -0.27 -4.76 4.86 56.52 0.27 -4.49 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 C 0.05 1.03 6.78 -2.97 -0.02 1.01 16 23 C -0.21 -2.42 9.04 -39.43 -0.36 -2.78 16 24 C -0.08 -0.80 9.69 -39.61 -0.38 -1.18 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 28 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.09 1.13 7.65 -51.93 -0.40 0.74 16 31 H 0.09 1.19 7.68 -51.92 -0.40 0.79 16 32 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 33 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 34 H 0.35 7.34 4.23 45.56 0.19 7.53 16 35 H 0.27 7.60 8.72 -40.82 -0.36 7.24 16 36 H 0.10 1.69 8.09 -51.93 -0.42 1.27 16 37 H 0.07 1.25 6.54 -51.92 -0.34 0.91 16 38 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -31.16 327.95 -7.53 -38.69 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -4.78 Total: 10.70 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.50 Total: -3.82 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.12 Total: -36.87 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.10 Total: -30.59 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.21 Total: 16.96 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.16 -7.53 -38.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186820187.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.771 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds