Wall clock time and date at job start Fri Apr 10 2020 14:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38267 * 119.94226 * 2 1 4 4 C 1.38141 * 120.05668 * 180.02562 * 3 2 1 5 5 C 1.38733 * 119.94181 * 359.97438 * 4 3 2 6 6 O 1.35901 * 120.05645 * 180.02562 * 5 4 3 7 7 C 1.42894 * 117.00486 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47495 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99958 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00331 * 180.02562 * 8 7 6 11 11 C 1.47579 * 134.49442 * 179.97438 * 10 8 7 12 12 C 1.53953 * 86.11613 * 155.35662 * 11 10 8 13 13 O 1.42891 * 113.74249 * 269.15295 * 12 11 10 14 14 C 1.50704 * 113.73748 * 137.95211 * 12 11 10 15 15 H 1.07998 * 120.00120 * 3.90458 * 14 12 11 16 16 C 1.37883 * 119.99782 * 183.91187 * 14 12 11 17 17 N 1.31513 * 120.00053 * 185.23007 * 16 14 12 18 18 Si 1.86796 * 119.99938 * 5.22387 * 16 14 12 19 19 H 1.48495 * 109.47550 * 270.00395 * 18 16 14 20 20 H 1.48511 * 109.47116 * 30.00543 * 18 16 14 21 21 H 1.48499 * 109.47060 * 149.99973 * 18 16 14 22 22 C 1.47582 * 134.49131 * 359.97438 * 10 8 7 23 23 C 1.38731 * 119.89044 * 0.27572 * 5 4 3 24 24 C 1.38147 * 119.94246 * 359.42390 * 23 5 4 25 25 H 1.08994 * 109.47294 * 90.00271 * 1 2 3 26 26 H 1.09006 * 109.46856 * 210.00394 * 1 2 3 27 27 H 1.08999 * 109.47175 * 330.00032 * 1 2 3 28 28 H 1.08000 * 119.97300 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.02938 * 180.02562 * 4 3 2 30 30 H 1.08998 * 109.47442 * 60.00019 * 7 6 5 31 31 H 1.09008 * 109.46872 * 300.00085 * 7 6 5 32 32 H 1.08998 * 113.77112 * 41.06103 * 11 10 8 33 33 H 1.09000 * 113.87384 * 269.66796 * 11 10 8 34 34 H 0.96707 * 113.99791 * 172.50486 * 13 12 11 35 35 H 0.97008 * 119.99681 * 354.94910 * 17 16 14 36 36 H 1.09003 * 113.77322 * 90.33860 * 22 10 8 37 37 H 1.09009 * 113.76717 * 318.93870 * 22 10 8 38 38 H 1.08000 * 120.02911 * 179.72505 * 23 5 4 39 39 H 1.07993 * 119.97087 * 180.27866 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2009 -0.0005 5 6 4.2734 0.0001 -0.0005 6 8 5.6324 0.0001 -0.0005 7 6 6.2812 -1.2730 0.0000 8 6 7.7752 -1.0756 0.0006 9 8 8.2387 0.0452 0.0000 10 7 8.5963 -2.1443 0.0007 11 6 10.0612 -2.3232 0.0006 12 6 9.7885 -3.6963 0.6412 13 8 9.7717 -3.6716 2.0698 14 6 10.6412 -4.8064 0.0828 15 1 11.4038 -4.5854 -0.6493 16 6 10.4476 -6.1041 0.5065 17 7 11.2572 -7.0568 0.0983 18 14 9.0356 -6.5091 1.6603 19 1 9.4934 -6.3811 3.0671 20 1 7.9125 -5.5681 1.4177 21 1 8.5779 -7.9001 1.4133 22 6 8.3915 -3.6059 0.0008 23 6 3.5786 -1.2007 -0.0058 24 6 2.1972 -1.1981 0.0010 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6558 2.1326 -0.0004 29 1 4.1171 2.1370 -0.0001 30 1 5.9884 -1.8305 -0.8897 31 1 5.9883 -1.8297 0.8903 32 1 10.5885 -1.6298 0.6558 33 1 10.4984 -2.3825 -0.9961 34 1 9.4889 -4.5032 2.4743 35 1 11.9449 -6.8610 -0.5573 36 1 8.3364 -4.0419 -0.9967 37 1 7.5856 -3.9365 0.6561 38 1 4.1173 -2.1368 -0.0103 39 1 1.6559 -2.1326 0.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186820187.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:14 Heat of formation + Delta-G solvation = -72.083697 kcal Electronic energy + Delta-G solvation = -22565.075298 eV Core-core repulsion = 19052.960459 eV Total energy + Delta-G solvation = -3512.114839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.69024 -41.01401 -39.46122 -38.36102 -36.21282 -34.64949 -33.03240 -32.05111 -31.39051 -29.24601 -27.39207 -26.99750 -26.36150 -23.78708 -22.31252 -21.80256 -20.31642 -19.96727 -19.40080 -18.12059 -17.82881 -17.57059 -17.22619 -16.52577 -16.29342 -16.02537 -15.69438 -15.21216 -15.12418 -14.74180 -14.49812 -14.43183 -14.37800 -14.02932 -13.91290 -13.69075 -13.10515 -13.09253 -12.86872 -12.54205 -12.42368 -12.10930 -11.87935 -11.81666 -11.67344 -11.31115 -11.13289 -10.94545 -10.42998 -9.97798 -9.79368 -9.04780 -8.81743 -6.60319 0.37029 0.42117 1.27275 1.37428 1.43349 1.48499 1.64230 2.39376 2.42648 2.77072 2.84343 3.15734 3.39610 3.76659 3.80874 3.91037 3.96843 3.98397 4.10041 4.26153 4.35506 4.38352 4.45378 4.54276 4.60232 4.63313 4.72820 4.83812 4.90248 4.91505 5.10208 5.17608 5.36121 5.38487 5.55087 5.68206 5.83950 5.90405 6.33432 6.37744 6.58446 6.75069 6.92045 7.25972 8.53335 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023449 B = 0.003477 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.816223 B = 8051.183279 C = 8927.229838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.130 4.130 3 C -0.083 4.083 4 C -0.165 4.165 5 C 0.096 3.904 6 O -0.321 6.321 7 C 0.057 3.943 8 C 0.528 3.472 9 O -0.582 6.582 10 N -0.631 5.631 11 C 0.124 3.876 12 C 0.187 3.813 13 O -0.563 6.563 14 C -0.614 4.614 15 H 0.037 0.963 16 C -0.014 4.014 17 N -0.925 5.925 18 Si 1.064 2.936 19 H -0.260 1.260 20 H -0.219 1.219 21 H -0.284 1.284 22 C 0.071 3.929 23 C -0.211 4.211 24 C -0.085 4.085 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.151 0.849 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.364 0.636 35 H 0.258 0.742 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.144 0.856 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.185 8.248 0.222 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.130 4.130 3 C -0.101 4.101 4 C -0.183 4.183 5 C 0.052 3.948 6 O -0.234 6.234 7 C -0.021 4.021 8 C 0.318 3.682 9 O -0.462 6.462 10 N -0.366 5.366 11 C 0.002 3.998 12 C 0.146 3.854 13 O -0.373 6.373 14 C -0.652 4.652 15 H 0.055 0.945 16 C -0.214 4.214 17 N -0.560 5.560 18 Si 0.884 3.116 19 H -0.186 1.186 20 H -0.142 1.142 21 H -0.210 1.210 22 C -0.051 4.051 23 C -0.230 4.230 24 C -0.102 4.102 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.169 0.831 29 H 0.145 0.855 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.215 0.785 35 H 0.067 0.933 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.161 0.839 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -23.415 8.562 0.962 24.950 hybrid contribution 1.816 0.411 -1.179 2.203 sum -21.600 8.973 -0.217 23.390 Atomic orbital electron populations 1.20770 0.88910 1.03690 1.03005 1.20259 0.97861 0.92727 1.02185 1.21141 0.92032 0.99273 0.97667 1.20658 0.94835 0.96155 1.06686 1.19383 0.81209 0.95747 0.98475 1.86090 1.17688 1.30453 1.89206 1.22394 0.88136 0.85543 1.06020 1.20308 0.88772 0.83102 0.76039 1.90675 1.78345 1.24813 1.52409 1.50002 1.08237 1.06971 1.71359 1.23275 0.80737 0.95250 1.00533 1.20493 0.92716 0.93270 0.78939 1.86452 1.90997 1.39398 1.20491 1.22361 1.21314 0.93573 1.27907 0.94484 1.27366 1.01808 0.92400 0.99850 1.70913 1.18426 1.36695 1.29931 0.83982 0.74393 0.78064 0.75113 1.18611 1.14219 1.21026 1.24732 1.00680 0.76542 1.03174 1.21521 0.96319 0.96887 1.08233 1.21192 0.92791 0.99080 0.97185 0.90530 0.90659 0.90690 0.83087 0.85494 0.86378 0.86785 0.91545 0.88369 0.78486 0.93285 0.87256 0.87712 0.83878 0.83288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 71.24 0.71 -0.32 16 2 C -0.13 -2.07 5.88 -19.85 -0.12 -2.19 16 3 C -0.08 -1.47 9.69 22.25 0.22 -1.26 16 4 C -0.16 -3.84 9.99 22.37 0.22 -3.62 16 5 C 0.10 2.50 6.69 22.51 0.15 2.65 16 6 O -0.32 -10.16 9.67 -73.40 -0.71 -10.87 16 7 C 0.06 1.57 4.97 71.23 0.35 1.92 16 8 C 0.53 19.72 8.13 87.66 0.71 20.43 16 9 O -0.58 -26.86 17.23 16.00 0.28 -26.58 16 10 N -0.63 -23.34 3.61 -840.24 -3.03 -26.37 16 11 C 0.12 5.09 8.23 86.48 0.71 5.80 16 12 C 0.19 7.94 1.06 -10.88 -0.01 7.93 16 13 O -0.56 -24.14 13.42 -148.98 -2.00 -26.14 16 14 C -0.61 -30.98 9.04 25.60 0.23 -30.75 16 15 H 0.04 2.07 8.04 -2.91 -0.02 2.05 16 16 C -0.01 -0.72 5.47 84.66 0.46 -0.26 16 17 N -0.93 -52.66 13.70 21.45 0.29 -52.37 16 18 Si 1.06 40.19 24.79 68.60 1.70 41.89 16 19 H -0.26 -9.23 6.95 99.48 0.69 -8.54 16 20 H -0.22 -6.42 4.86 99.48 0.48 -5.94 16 21 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 22 C 0.07 2.39 6.78 86.48 0.59 2.98 16 23 C -0.21 -4.33 9.04 22.37 0.20 -4.13 16 24 C -0.08 -1.42 9.69 22.25 0.22 -1.20 16 25 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.07 0.58 8.08 -2.38 -0.02 0.56 16 27 H 0.07 0.58 8.08 -2.39 -0.02 0.56 16 28 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 29 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.12 2.55 7.65 -2.39 -0.02 2.53 16 31 H 0.11 2.57 7.68 -2.38 -0.02 2.55 16 32 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.10 3.85 8.09 -2.39 -0.02 3.83 16 34 H 0.36 13.89 4.23 -74.05 -0.31 13.58 16 35 H 0.26 14.98 8.72 -92.70 -0.81 14.18 16 36 H 0.11 3.47 8.09 -2.39 -0.02 3.45 16 37 H 0.10 2.94 6.54 -2.38 -0.02 2.92 16 38 H 0.14 2.39 6.30 -2.91 -0.02 2.37 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -70.50 327.95 1.66 -68.84 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.48 Total: 33.60 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 4.65 Total: -2.00 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -2.74 Total: -78.74 kcal Atomic # 8 Polarization: -61.16 SS G_CDS: -2.43 Total: -63.59 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.70 Total: 41.89 kcal Total: -70.50 1.66 -68.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186820187.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.245 kcal (2) G-P(sol) polarization free energy of solvation -70.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds