Wall clock time and date at job start Fri Apr 10 2020 14:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99971 * 2 1 4 4 H 1.48509 * 109.46799 * 240.00129 * 3 2 1 5 5 H 1.48493 * 109.47395 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47050 * 120.00381 * 3 2 1 7 7 C 1.37878 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99549 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00221 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47210 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47462 * 180.02562 * 10 9 7 12 12 S 1.81400 * 109.47349 * 179.97438 * 11 10 9 13 13 O 1.42106 * 110.53843 * 68.37577 * 12 11 10 14 14 O 1.42092 * 110.54497 * 291.62389 * 12 11 10 15 15 N 1.65605 * 104.44619 * 179.97438 * 12 11 10 16 16 C 1.46495 * 119.99763 * 65.00605 * 15 12 11 17 17 C 1.53003 * 109.46866 * 164.99469 * 16 15 12 18 18 H 1.09004 * 110.54016 * 307.60959 * 17 16 15 19 19 C 1.54891 * 110.48809 * 70.22366 * 17 16 15 20 20 C 1.54888 * 102.75120 * 156.61818 * 19 17 16 21 21 C 1.54261 * 104.19672 * 322.06034 * 20 19 17 22 22 C 1.53876 * 106.59990 * 23.60631 * 21 20 19 23 23 H 1.08995 * 110.03160 * 119.28453 * 22 21 20 24 24 O 1.42900 * 110.03320 * 240.71574 * 22 21 20 25 25 H 0.96999 * 119.99643 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47254 * 59.99957 * 9 7 2 27 27 H 1.08996 * 109.47666 * 299.99906 * 9 7 2 28 28 H 1.08995 * 109.47037 * 59.99766 * 10 9 7 29 29 H 1.08999 * 109.47231 * 299.99690 * 10 9 7 30 30 H 1.09005 * 109.47221 * 59.99955 * 11 10 9 31 31 H 1.09000 * 109.47148 * 300.00459 * 11 10 9 32 32 H 0.97000 * 119.99620 * 244.99888 * 15 12 11 33 33 H 1.08998 * 109.47735 * 44.99584 * 16 15 12 34 34 H 1.08993 * 109.47293 * 284.99295 * 16 15 12 35 35 H 1.09005 * 110.75269 * 38.30322 * 19 17 16 36 36 H 1.08999 * 110.75712 * 274.93756 * 19 17 16 37 37 H 1.09000 * 110.48622 * 203.37816 * 20 19 17 38 38 H 1.08999 * 110.48451 * 80.73628 * 20 19 17 39 39 H 1.08998 * 110.03492 * 264.32506 * 21 20 19 40 40 H 1.08999 * 110.07717 * 142.91216 * 21 20 19 41 41 H 0.96691 * 114.00338 * 298.54498 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4802 -4.9871 0.0020 12 16 2.6589 -6.3659 0.0009 13 8 3.3567 -6.4263 1.2374 14 8 3.3547 -6.4263 -1.2366 15 7 1.7084 -7.7221 0.0023 16 6 0.8477 -8.0144 -1.1465 17 6 0.3743 -9.4675 -1.0723 18 1 1.2231 -10.1405 -0.9505 19 6 -0.6337 -9.6506 0.0893 20 6 -1.4292 -10.9072 -0.3433 21 6 -1.5783 -10.7532 -1.8709 22 6 -0.4317 -9.8378 -2.3345 23 1 0.2058 -10.3673 -3.0425 24 8 -0.9621 -8.6574 -2.9405 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5574 -0.8880 27 1 0.6247 -2.5563 0.8919 28 1 2.8725 -3.6040 0.8909 29 1 2.8711 -3.6048 -0.8891 30 1 0.8531 -5.0450 -0.8877 31 1 0.8539 -5.0447 0.8922 32 1 1.7217 -8.3228 0.7638 33 1 1.4082 -7.8616 -2.0687 34 1 -0.0159 -7.3497 -1.1319 35 1 -1.2919 -8.7854 0.1695 36 1 -0.1117 -9.8285 1.0294 37 1 -2.4081 -10.9227 0.1360 38 1 -0.8718 -11.8127 -0.1037 39 1 -2.5394 -10.2971 -2.1082 40 1 -1.4978 -11.7267 -2.3547 41 1 -1.4972 -8.8260 -3.7280 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305100028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:08:29 Heat of formation + Delta-G solvation = -154.723701 kcal Electronic energy + Delta-G solvation = -21527.093596 eV Core-core repulsion = 18146.839169 eV Total energy + Delta-G solvation = -3380.254427 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.50633 -36.81994 -35.77778 -35.61456 -34.61525 -34.54205 -32.14480 -29.67704 -28.06406 -27.75561 -24.41895 -23.67548 -21.14354 -20.65860 -20.22195 -19.05332 -17.87026 -17.35275 -16.58957 -16.12470 -15.86353 -15.54883 -15.08786 -14.98057 -14.47559 -14.28928 -14.05022 -13.96113 -12.99688 -12.76699 -12.53976 -12.24829 -12.16209 -11.87891 -11.76285 -11.70321 -11.57597 -11.51446 -11.19561 -11.05506 -10.93792 -10.86788 -10.83565 -10.82424 -10.39360 -10.23081 -9.90006 -9.59183 -9.26724 -9.03051 -8.37253 -6.02439 -4.05403 0.55755 2.93697 3.34417 3.38017 3.41402 3.86612 4.01060 4.16572 4.22835 4.43517 4.45296 4.57458 4.88943 4.91492 5.03163 5.05214 5.17908 5.25526 5.28762 5.32753 5.34600 5.48111 5.52618 5.63571 5.70487 5.73058 5.90215 5.96045 5.96609 6.10475 6.32488 6.50950 6.91933 6.98823 7.38482 7.60989 7.71553 7.95815 8.36550 9.00708 9.58980 11.08792 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022408 B = 0.003264 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.246149 B = 8576.022743 C = 9239.350157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.602 3.398 13 O -0.967 6.967 14 O -0.964 6.964 15 N -1.127 6.127 16 C 0.131 3.869 17 C -0.092 4.092 18 H 0.092 0.908 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.158 4.158 22 C 0.105 3.895 23 H 0.060 0.940 24 O -0.560 6.560 25 H 0.262 0.738 26 H 0.021 0.979 27 H 0.020 0.980 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.412 0.588 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.557 -24.215 -3.166 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.145 4.145 11 C -0.740 4.740 12 S 2.698 3.302 13 O -0.957 6.957 14 O -0.954 6.954 15 N -0.885 5.885 16 C 0.005 3.995 17 C -0.112 4.112 18 H 0.110 0.890 19 C -0.160 4.160 20 C -0.161 4.161 21 C -0.196 4.196 22 C 0.045 3.955 23 H 0.078 0.922 24 O -0.366 6.366 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.245 0.755 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.439 -23.716 -2.855 24.133 hybrid contribution -0.705 0.500 -0.147 0.877 sum -4.144 -23.216 -3.001 23.773 Atomic orbital electron populations 1.69953 1.06083 1.26842 1.50586 1.25021 0.94888 0.99341 0.95132 0.86612 0.79562 0.82838 0.78750 1.20126 1.21265 1.20134 1.21227 0.93223 0.90942 1.51083 0.92429 1.19056 0.93538 0.90429 0.97731 1.21495 0.99371 0.91753 1.01906 1.30532 1.16395 1.15837 1.11263 1.05199 0.75581 0.75273 0.74107 1.93570 1.70862 1.85991 1.45287 1.93559 1.70396 1.85759 1.45649 1.55729 1.62482 1.42439 1.27890 1.21087 0.94016 0.96215 0.88144 1.22270 0.97775 0.96956 0.94173 0.88978 1.22643 0.97430 0.98399 0.97527 1.22296 1.00548 0.98231 0.94983 1.22943 0.99519 1.00039 0.97084 1.22419 0.93492 0.85627 0.93958 0.92183 1.86563 1.71482 1.31869 1.46644 0.92870 0.96098 0.96140 0.91628 0.91598 0.85433 0.85358 0.75466 0.90075 0.90673 0.90475 0.91133 0.91410 0.91547 0.90649 0.91420 0.77416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.80 4.97 -27.89 -0.14 0.66 16 10 C -0.11 -2.21 5.16 -26.73 -0.14 -2.35 16 11 C -0.61 -9.78 6.07 37.16 0.23 -9.55 16 12 S 2.60 39.67 5.46 -107.50 -0.59 39.08 16 13 O -0.97 -17.42 18.08 -57.54 -1.04 -18.46 16 14 O -0.96 -17.62 17.50 -57.54 -1.01 -18.63 16 15 N -1.13 -12.67 5.82 -10.62 -0.06 -12.73 16 16 C 0.13 1.40 4.72 -4.04 -0.02 1.38 16 17 C -0.09 -0.75 2.93 -88.96 -0.26 -1.01 16 18 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 19 C -0.12 -0.90 6.02 -24.74 -0.15 -1.05 16 20 C -0.12 -0.76 6.83 -25.08 -0.17 -0.93 16 21 C -0.16 -0.93 6.60 -25.61 -0.17 -1.10 16 22 C 0.10 0.76 4.13 -25.61 -0.11 0.65 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 O -0.56 -4.60 11.74 -35.23 -0.41 -5.01 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.13 1.87 8.14 -51.92 -0.42 1.45 16 31 H 0.13 1.85 8.14 -51.92 -0.42 1.43 16 32 H 0.41 3.79 8.35 -34.47 -0.29 3.51 16 33 H 0.08 0.96 7.70 -51.93 -0.40 0.56 16 34 H 0.08 0.81 7.58 -51.93 -0.39 0.41 16 35 H 0.08 0.64 7.97 -51.93 -0.41 0.23 16 36 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.44 7.95 -51.93 -0.41 0.03 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.38 1.62 9.10 45.56 0.41 2.04 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -36.20 347.09 -9.60 -45.81 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.11 Total: 1.18 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: -1.34 Total: -27.13 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.67 Total: -38.90 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -2.46 Total: -42.09 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 39.67 SS G_CDS: -0.59 Total: 39.08 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.20 -9.60 -45.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305100028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.915 kcal (2) G-P(sol) polarization free energy of solvation -36.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds