Wall clock time and date at job start Fri Apr 10 2020 14:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99971 * 2 1 4 4 H 1.48509 * 109.46799 * 240.00129 * 3 2 1 5 5 H 1.48493 * 109.47395 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47050 * 120.00381 * 3 2 1 7 7 C 1.37878 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99549 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00221 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47210 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47462 * 180.02562 * 10 9 7 12 12 S 1.81400 * 109.47349 * 179.97438 * 11 10 9 13 13 O 1.42106 * 110.53843 * 68.37577 * 12 11 10 14 14 O 1.42092 * 110.54497 * 291.62389 * 12 11 10 15 15 N 1.65605 * 104.44619 * 179.97438 * 12 11 10 16 16 C 1.46495 * 119.99763 * 65.00605 * 15 12 11 17 17 C 1.53003 * 109.46866 * 164.99469 * 16 15 12 18 18 H 1.09004 * 110.54016 * 307.60959 * 17 16 15 19 19 C 1.54891 * 110.48809 * 70.22366 * 17 16 15 20 20 C 1.54888 * 102.75120 * 156.61818 * 19 17 16 21 21 C 1.54261 * 104.19672 * 322.06034 * 20 19 17 22 22 C 1.53876 * 106.59990 * 23.60631 * 21 20 19 23 23 H 1.08995 * 110.03160 * 119.28453 * 22 21 20 24 24 O 1.42900 * 110.03320 * 240.71574 * 22 21 20 25 25 H 0.96999 * 119.99643 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47254 * 59.99957 * 9 7 2 27 27 H 1.08996 * 109.47666 * 299.99906 * 9 7 2 28 28 H 1.08995 * 109.47037 * 59.99766 * 10 9 7 29 29 H 1.08999 * 109.47231 * 299.99690 * 10 9 7 30 30 H 1.09005 * 109.47221 * 59.99955 * 11 10 9 31 31 H 1.09000 * 109.47148 * 300.00459 * 11 10 9 32 32 H 0.97000 * 119.99620 * 244.99888 * 15 12 11 33 33 H 1.08998 * 109.47735 * 44.99584 * 16 15 12 34 34 H 1.08993 * 109.47293 * 284.99295 * 16 15 12 35 35 H 1.09005 * 110.75269 * 38.30322 * 19 17 16 36 36 H 1.08999 * 110.75712 * 274.93756 * 19 17 16 37 37 H 1.09000 * 110.48622 * 203.37816 * 20 19 17 38 38 H 1.08999 * 110.48451 * 80.73628 * 20 19 17 39 39 H 1.08998 * 110.03492 * 264.32506 * 21 20 19 40 40 H 1.08999 * 110.07717 * 142.91216 * 21 20 19 41 41 H 0.96691 * 114.00338 * 298.54498 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4802 -4.9871 0.0020 12 16 2.6589 -6.3659 0.0009 13 8 3.3567 -6.4263 1.2374 14 8 3.3547 -6.4263 -1.2366 15 7 1.7084 -7.7221 0.0023 16 6 0.8477 -8.0144 -1.1465 17 6 0.3743 -9.4675 -1.0723 18 1 1.2231 -10.1405 -0.9505 19 6 -0.6337 -9.6506 0.0893 20 6 -1.4292 -10.9072 -0.3433 21 6 -1.5783 -10.7532 -1.8709 22 6 -0.4317 -9.8378 -2.3345 23 1 0.2058 -10.3673 -3.0425 24 8 -0.9621 -8.6574 -2.9405 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5574 -0.8880 27 1 0.6247 -2.5563 0.8919 28 1 2.8725 -3.6040 0.8909 29 1 2.8711 -3.6048 -0.8891 30 1 0.8531 -5.0450 -0.8877 31 1 0.8539 -5.0447 0.8922 32 1 1.7217 -8.3228 0.7638 33 1 1.4082 -7.8616 -2.0687 34 1 -0.0159 -7.3497 -1.1319 35 1 -1.2919 -8.7854 0.1695 36 1 -0.1117 -9.8285 1.0294 37 1 -2.4081 -10.9227 0.1360 38 1 -0.8718 -11.8127 -0.1037 39 1 -2.5394 -10.2971 -2.1082 40 1 -1.4978 -11.7267 -2.3547 41 1 -1.4972 -8.8260 -3.7280 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305100028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:08:29 Heat of formation + Delta-G solvation = -183.305439 kcal Electronic energy + Delta-G solvation = -21528.332994 eV Core-core repulsion = 18146.839169 eV Total energy + Delta-G solvation = -3381.493824 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.08752 -38.18406 -37.06780 -36.47264 -36.45308 -35.24796 -34.16476 -30.37732 -29.65548 -28.58779 -25.62298 -25.18404 -22.44756 -21.63253 -20.93305 -20.24397 -18.70211 -18.59444 -18.33340 -17.27303 -17.14718 -16.50256 -16.35299 -16.18900 -15.64757 -15.46021 -14.90496 -14.76478 -14.48064 -14.08719 -13.69559 -13.50575 -13.34711 -13.25092 -13.18471 -13.11406 -12.97006 -12.73073 -12.64996 -12.18239 -12.15244 -11.98962 -11.75524 -11.68903 -11.63636 -11.38854 -11.34475 -11.09525 -10.75493 -10.57279 -10.31487 -8.22584 -6.34001 -0.72128 1.39961 1.42952 1.50874 1.79935 2.39930 2.75158 3.10653 3.22968 3.36203 3.60072 3.68487 3.77563 3.90197 3.98024 4.23857 4.35491 4.39667 4.48275 4.49786 4.56543 4.66412 4.75729 4.85427 4.95475 4.95830 5.03956 5.07368 5.08371 5.22447 5.25782 5.38299 5.44708 5.50616 5.62268 5.79045 6.13674 6.19367 6.81395 6.99301 7.35238 8.88851 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022408 B = 0.003264 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.246149 B = 8576.022743 C = 9239.350157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.554 4.554 8 H 0.061 0.939 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.610 4.610 12 S 2.634 3.366 13 O -0.992 6.992 14 O -0.992 6.992 15 N -1.109 6.109 16 C 0.126 3.874 17 C -0.094 4.094 18 H 0.102 0.898 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.153 4.153 22 C 0.102 3.898 23 H 0.069 0.931 24 O -0.581 6.581 25 H 0.265 0.735 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.425 0.575 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.412 -25.337 -3.186 25.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.592 4.592 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.741 4.741 12 S 2.729 3.271 13 O -0.982 6.982 14 O -0.982 6.982 15 N -0.871 5.871 16 C 0.001 3.999 17 C -0.114 4.114 18 H 0.120 0.880 19 C -0.162 4.162 20 C -0.160 4.160 21 C -0.191 4.191 22 C 0.042 3.958 23 H 0.087 0.913 24 O -0.390 6.390 25 H 0.074 0.926 26 H 0.020 0.980 27 H 0.021 0.979 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.261 0.739 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.296 -24.845 -2.872 25.227 hybrid contribution -0.810 0.792 -0.163 1.145 sum -4.107 -24.053 -3.035 24.589 Atomic orbital electron populations 1.70073 1.07672 1.27983 1.51269 1.25958 0.95834 1.03294 0.94513 0.85511 0.78344 0.78064 0.79228 1.19206 1.20554 1.19183 1.21718 0.93764 0.92515 1.51239 0.92108 1.18955 0.94014 0.91889 0.95845 1.21317 0.98675 0.92480 1.02090 1.30503 1.16743 1.13942 1.12895 1.04065 0.75044 0.75275 0.72751 1.93531 1.71886 1.86493 1.46307 1.93523 1.71432 1.86298 1.46928 1.55304 1.62041 1.40965 1.28775 1.21215 0.93459 0.98189 0.87086 1.22337 0.98499 0.95205 0.95355 0.87958 1.22656 0.97270 0.98632 0.97643 1.22311 1.00602 0.97923 0.95123 1.22905 0.98850 1.00376 0.96955 1.22504 0.94005 0.85574 0.93681 0.91261 1.86517 1.71994 1.32799 1.47695 0.92606 0.97994 0.97921 0.91438 0.91562 0.84129 0.83659 0.73875 0.91236 0.90783 0.91705 0.90320 0.91198 0.90538 0.90776 0.90004 0.75682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.55 -32.14 9.11 25.60 0.23 -31.91 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.65 4.97 29.85 0.15 1.80 16 10 C -0.11 -4.48 5.16 30.60 0.16 -4.32 16 11 C -0.61 -19.33 6.07 71.98 0.44 -18.89 16 12 S 2.63 78.13 5.46 -56.49 -0.31 77.83 16 13 O -0.99 -34.81 18.08 -127.65 -2.31 -37.12 16 14 O -0.99 -35.71 17.50 -127.65 -2.23 -37.95 16 15 N -1.11 -23.37 5.82 -187.50 -1.09 -24.46 16 16 C 0.13 2.54 4.72 86.38 0.41 2.95 16 17 C -0.09 -1.38 2.93 -9.72 -0.03 -1.41 16 18 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 19 C -0.12 -1.62 6.02 31.89 0.19 -1.43 16 20 C -0.12 -1.24 6.83 31.67 0.22 -1.02 16 21 C -0.15 -1.47 6.60 31.32 0.21 -1.26 16 22 C 0.10 1.29 4.13 31.32 0.13 1.42 16 23 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 24 O -0.58 -8.91 11.74 -148.98 -1.75 -10.66 16 25 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 27 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.14 4.06 8.14 -2.39 -0.02 4.04 16 31 H 0.15 4.08 8.14 -2.39 -0.02 4.06 16 32 H 0.42 7.02 8.35 -96.74 -0.81 6.21 16 33 H 0.07 1.59 7.70 -2.39 -0.02 1.57 16 34 H 0.07 1.52 7.58 -2.39 -0.02 1.50 16 35 H 0.06 1.01 7.97 -2.38 -0.02 0.99 16 36 H 0.08 0.87 8.10 -2.39 -0.02 0.85 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 0.74 7.95 -2.39 -0.02 0.72 16 40 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.39 2.96 9.10 -74.06 -0.67 2.28 16 Total: -1.00 -77.02 347.09 -3.28 -80.30 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -0.46 Total: 15.08 kcal Atomic # 6 Polarization: -56.03 SS G_CDS: 2.56 Total: -53.47 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -0.81 Total: -80.74 kcal Atomic # 8 Polarization: -79.44 SS G_CDS: -6.29 Total: -85.73 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 78.13 SS G_CDS: -0.31 Total: 77.83 kcal Total: -77.02 -3.28 -80.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305100028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.010 kcal (2) G-P(sol) polarization free energy of solvation -77.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds