Wall clock time and date at job start Fri Apr 10 2020 14:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.46911 * 179.97438 * 11 10 9 13 13 O 1.42091 * 110.54497 * 291.62816 * 12 11 10 14 14 O 1.42099 * 110.53989 * 68.37910 * 12 11 10 15 15 N 1.65600 * 104.44695 * 179.97438 * 12 11 10 16 16 C 1.46500 * 119.99755 * 65.00607 * 15 12 11 17 17 C 1.53002 * 109.47034 * 164.99886 * 16 15 12 18 18 H 1.09003 * 110.43633 * 54.29721 * 17 16 15 19 19 C 1.54886 * 110.48694 * 291.75563 * 17 16 15 20 20 C 1.54885 * 102.75131 * 203.37962 * 19 17 16 21 21 C 1.54269 * 104.19494 * 37.94002 * 20 19 17 22 22 C 1.54086 * 106.62133 * 336.28198 * 21 20 19 23 23 H 1.09000 * 110.16025 * 240.87872 * 22 21 20 24 24 O 1.42907 * 110.00698 * 119.38094 * 22 21 20 25 25 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 27 27 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 28 28 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 29 29 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 30 30 H 1.08994 * 109.47272 * 300.00031 * 11 10 9 31 31 H 1.09003 * 109.46507 * 60.00134 * 11 10 9 32 32 H 0.96995 * 120.00473 * 245.00117 * 15 12 11 33 33 H 1.09002 * 109.46756 * 284.99708 * 16 15 12 34 34 H 1.08999 * 109.47520 * 44.99362 * 16 15 12 35 35 H 1.09005 * 110.75513 * 321.69891 * 19 17 16 36 36 H 1.09002 * 110.75887 * 85.06299 * 19 17 16 37 37 H 1.09003 * 110.49081 * 156.61603 * 20 19 17 38 38 H 1.09004 * 110.48855 * 279.13477 * 20 19 17 39 39 H 1.09000 * 110.03075 * 95.67598 * 21 20 19 40 40 H 1.09000 * 110.03591 * 217.05657 * 21 20 19 41 41 H 0.96699 * 113.99739 * 62.97927 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 16 6.1563 -4.3467 0.0016 13 8 5.8602 -4.9799 1.2387 14 8 5.8602 -4.9807 -1.2352 15 7 7.8060 -4.2017 0.0007 16 6 8.4892 -3.6030 1.1500 17 6 9.9843 -3.9194 1.0762 18 1 10.3927 -3.6059 0.1154 19 6 10.2300 -5.4319 1.3021 20 6 11.6980 -5.4699 1.7946 21 6 11.8283 -4.2221 2.6923 22 6 10.7392 -3.2334 2.2335 23 1 11.1956 -2.3072 1.8844 24 8 9.8406 -2.9613 3.3108 25 1 -0.4850 0.8400 -0.0004 26 1 3.8753 -0.6803 -0.8889 27 1 3.8746 -0.6799 0.8911 28 1 3.6579 -3.1505 0.8908 29 1 3.6587 -3.1502 -0.8892 30 1 5.9150 -2.1226 -0.8890 31 1 5.9149 -2.1227 0.8910 32 1 8.3199 -4.5132 -0.7606 33 1 8.3453 -2.5226 1.1358 34 1 8.0762 -4.0123 2.0720 35 1 9.5564 -5.8231 2.0646 36 1 10.1212 -5.9846 0.3689 37 1 11.8836 -6.3759 2.3716 38 1 12.3853 -5.4086 0.9507 39 1 11.6713 -4.4949 3.7359 40 1 12.8141 -3.7740 2.5681 41 1 10.2559 -2.5295 4.0699 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305100030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:08:34 Heat of formation + Delta-G solvation = -150.388202 kcal Electronic energy + Delta-G solvation = -21576.587924 eV Core-core repulsion = 18196.521498 eV Total energy + Delta-G solvation = -3380.066426 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.53060 -36.87944 -35.83388 -35.66175 -34.77077 -34.59890 -32.18626 -29.72542 -28.34390 -28.07689 -24.46806 -23.56963 -21.12865 -20.59090 -20.28565 -19.13735 -17.88104 -17.43754 -16.86573 -16.25980 -15.88070 -15.68367 -15.17028 -14.91388 -14.56401 -14.30033 -14.15439 -14.01670 -12.98313 -12.86512 -12.67975 -12.31411 -12.24844 -12.09916 -11.86906 -11.79838 -11.57342 -11.53346 -11.52013 -11.21231 -10.99287 -10.94297 -10.92096 -10.82441 -10.28332 -10.06163 -9.87013 -9.75472 -9.31658 -9.21067 -8.56774 -6.06497 -4.05536 0.47517 2.87023 3.28067 3.35496 3.38020 3.81455 3.95738 4.11145 4.18988 4.41098 4.42197 4.49620 4.81966 4.87366 4.98152 5.01796 5.08790 5.14431 5.21029 5.26878 5.28399 5.45384 5.48568 5.60994 5.62358 5.71762 5.80975 5.88599 5.92087 6.07972 6.18425 6.30911 6.70596 6.92192 7.15726 7.29828 7.33298 7.73376 8.49961 8.98215 9.54733 11.06871 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.003454 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.162785 B = 8103.838449 C = 8928.558085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.287 1.287 7 C -0.526 4.526 8 H 0.075 0.925 9 C -0.005 4.005 10 C -0.098 4.098 11 C -0.616 4.616 12 S 2.605 3.395 13 O -0.959 6.959 14 O -0.964 6.964 15 N -1.126 6.126 16 C 0.130 3.870 17 C -0.091 4.091 18 H 0.091 0.909 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.157 4.157 22 C 0.105 3.895 23 H 0.060 0.940 24 O -0.560 6.560 25 H 0.264 0.736 26 H 0.015 0.985 27 H 0.020 0.980 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.412 0.588 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.809 -6.710 3.776 28.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.190 1.190 6 H -0.213 1.213 7 C -0.564 4.564 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.137 4.137 11 C -0.748 4.748 12 S 2.700 3.300 13 O -0.949 6.949 14 O -0.954 6.954 15 N -0.885 5.885 16 C 0.004 3.996 17 C -0.111 4.111 18 H 0.109 0.891 19 C -0.158 4.158 20 C -0.161 4.161 21 C -0.195 4.195 22 C 0.045 3.955 23 H 0.078 0.922 24 O -0.365 6.365 25 H 0.074 0.926 26 H 0.034 0.966 27 H 0.038 0.962 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.246 0.754 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 26.657 -7.641 3.548 27.956 hybrid contribution 1.274 1.861 0.005 2.255 sum 27.930 -5.780 3.553 28.742 Atomic orbital electron populations 1.69914 1.06287 1.26958 1.50807 1.25030 0.94758 0.99177 0.94485 0.86770 0.80342 0.83606 0.78505 1.20250 1.19031 1.21279 1.21148 0.89291 0.94775 1.51218 0.90720 1.19530 0.97291 0.90800 0.96703 1.21309 0.86728 1.02883 1.02782 1.30599 1.09420 1.23621 1.11118 1.05137 0.72731 0.77916 0.74209 1.93575 1.82997 1.72737 1.45581 1.93579 1.82887 1.73706 1.45276 1.55735 1.26503 1.78460 1.27784 1.21104 0.92157 0.97661 0.88641 1.22257 0.94931 0.96304 0.97638 0.89119 1.22611 0.96303 0.95032 1.01846 1.22309 0.97028 0.97686 0.99107 1.22968 0.98964 0.96753 1.00848 1.22459 0.89215 0.96428 0.87399 0.92158 1.86574 1.38530 1.82742 1.28701 0.92645 0.96645 0.96157 0.90948 0.91031 0.85382 0.85471 0.75433 0.91692 0.89091 0.90449 0.91142 0.91433 0.91558 0.90638 0.91440 0.77425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.53 -15.18 9.66 -34.44 -0.33 -15.51 16 8 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 9 C 0.00 -0.11 4.04 -27.88 -0.11 -0.22 16 10 C -0.10 -1.95 5.16 -26.73 -0.14 -2.09 16 11 C -0.62 -9.18 6.07 37.16 0.23 -8.95 16 12 S 2.60 38.08 5.46 -107.50 -0.59 37.49 16 13 O -0.96 -17.13 17.50 -57.54 -1.01 -18.13 16 14 O -0.96 -16.86 18.08 -57.54 -1.04 -17.90 16 15 N -1.13 -11.86 5.73 -10.61 -0.06 -11.93 16 16 C 0.13 1.30 4.76 -4.04 -0.02 1.28 16 17 C -0.09 -0.70 2.89 -88.96 -0.26 -0.96 16 18 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 19 C -0.12 -0.94 6.18 -24.74 -0.15 -1.09 16 20 C -0.12 -0.76 6.83 -25.07 -0.17 -0.93 16 21 C -0.16 -0.89 6.61 -25.50 -0.17 -1.06 16 22 C 0.10 0.70 4.14 -25.50 -0.11 0.59 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 O -0.56 -4.35 11.70 -35.23 -0.41 -4.76 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 27 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 28 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 31 H 0.13 1.67 8.14 -51.92 -0.42 1.25 16 32 H 0.41 3.48 8.62 -34.47 -0.30 3.19 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.08 7.10 -51.93 -0.37 0.71 16 35 H 0.08 0.74 8.00 -51.93 -0.42 0.32 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.43 7.96 -51.93 -0.41 0.02 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.38 1.44 9.11 45.56 0.42 1.86 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -36.89 343.87 -9.23 -46.12 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.08 Total: 1.26 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: -1.33 Total: -27.08 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.71 Total: -39.13 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -2.46 Total: -40.79 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Atomic # 16 Polarization: 38.08 SS G_CDS: -0.59 Total: 37.49 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.89 -9.23 -46.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305100030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.269 kcal (2) G-P(sol) polarization free energy of solvation -36.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds