Wall clock time and date at job start Fri Apr 10 2020 14:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.46911 * 179.97438 * 11 10 9 13 13 O 1.42091 * 110.54497 * 291.62816 * 12 11 10 14 14 O 1.42099 * 110.53989 * 68.37910 * 12 11 10 15 15 N 1.65600 * 104.44695 * 179.97438 * 12 11 10 16 16 C 1.46500 * 119.99755 * 65.00607 * 15 12 11 17 17 C 1.53002 * 109.47034 * 164.99886 * 16 15 12 18 18 H 1.09003 * 110.43633 * 54.29721 * 17 16 15 19 19 C 1.54886 * 110.48694 * 291.75563 * 17 16 15 20 20 C 1.54885 * 102.75131 * 203.37962 * 19 17 16 21 21 C 1.54269 * 104.19494 * 37.94002 * 20 19 17 22 22 C 1.54086 * 106.62133 * 336.28198 * 21 20 19 23 23 H 1.09000 * 110.16025 * 240.87872 * 22 21 20 24 24 O 1.42907 * 110.00698 * 119.38094 * 22 21 20 25 25 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 27 27 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 28 28 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 29 29 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 30 30 H 1.08994 * 109.47272 * 300.00031 * 11 10 9 31 31 H 1.09003 * 109.46507 * 60.00134 * 11 10 9 32 32 H 0.96995 * 120.00473 * 245.00117 * 15 12 11 33 33 H 1.09002 * 109.46756 * 284.99708 * 16 15 12 34 34 H 1.08999 * 109.47520 * 44.99362 * 16 15 12 35 35 H 1.09005 * 110.75513 * 321.69891 * 19 17 16 36 36 H 1.09002 * 110.75887 * 85.06299 * 19 17 16 37 37 H 1.09003 * 110.49081 * 156.61603 * 20 19 17 38 38 H 1.09004 * 110.48855 * 279.13477 * 20 19 17 39 39 H 1.09000 * 110.03075 * 95.67598 * 21 20 19 40 40 H 1.09000 * 110.03591 * 217.05657 * 21 20 19 41 41 H 0.96699 * 113.99739 * 62.97927 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 16 6.1563 -4.3467 0.0016 13 8 5.8602 -4.9799 1.2387 14 8 5.8602 -4.9807 -1.2352 15 7 7.8060 -4.2017 0.0007 16 6 8.4892 -3.6030 1.1500 17 6 9.9843 -3.9194 1.0762 18 1 10.3927 -3.6059 0.1154 19 6 10.2300 -5.4319 1.3021 20 6 11.6980 -5.4699 1.7946 21 6 11.8283 -4.2221 2.6923 22 6 10.7392 -3.2334 2.2335 23 1 11.1956 -2.3072 1.8844 24 8 9.8406 -2.9613 3.3108 25 1 -0.4850 0.8400 -0.0004 26 1 3.8753 -0.6803 -0.8889 27 1 3.8746 -0.6799 0.8911 28 1 3.6579 -3.1505 0.8908 29 1 3.6587 -3.1502 -0.8892 30 1 5.9150 -2.1226 -0.8890 31 1 5.9149 -2.1227 0.8910 32 1 8.3199 -4.5132 -0.7606 33 1 8.3453 -2.5226 1.1358 34 1 8.0762 -4.0123 2.0720 35 1 9.5564 -5.8231 2.0646 36 1 10.1212 -5.9846 0.3689 37 1 11.8836 -6.3759 2.3716 38 1 12.3853 -5.4086 0.9507 39 1 11.6713 -4.4949 3.7359 40 1 12.8141 -3.7740 2.5681 41 1 10.2559 -2.5295 4.0699 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305100030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:08:34 Heat of formation + Delta-G solvation = -180.782987 kcal Electronic energy + Delta-G solvation = -21577.905941 eV Core-core repulsion = 18196.521498 eV Total energy + Delta-G solvation = -3381.384442 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06186 -38.17587 -37.05484 -36.50793 -36.43175 -35.25294 -34.24990 -30.37041 -30.15165 -28.58148 -25.39421 -25.16408 -22.27694 -21.59728 -21.02604 -20.23538 -18.98703 -18.54999 -18.41381 -17.30902 -17.17963 -16.37854 -16.23426 -16.10544 -15.64568 -15.42058 -15.14165 -14.85274 -14.76609 -14.08116 -13.65659 -13.54715 -13.35600 -13.24770 -13.19359 -13.15378 -13.09174 -12.69439 -12.55575 -12.13308 -11.99606 -11.87178 -11.84400 -11.64507 -11.60020 -11.41759 -11.36639 -11.21116 -10.77702 -10.74250 -10.28816 -8.30153 -6.36268 -0.71885 1.36649 1.39595 1.51375 1.81759 2.36499 2.77329 3.04869 3.24445 3.37113 3.61144 3.67648 3.74906 3.90393 3.96263 4.27667 4.33634 4.36447 4.48729 4.51062 4.56471 4.63302 4.73225 4.84143 4.85145 4.95111 4.98125 5.06158 5.06476 5.21594 5.25681 5.33488 5.39066 5.45582 5.49446 5.62212 6.16156 6.25041 6.71922 7.01188 7.28372 8.86964 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.003454 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.162785 B = 8103.838449 C = 8928.558085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.239 1.239 6 H -0.285 1.285 7 C -0.545 4.545 8 H 0.029 0.971 9 C -0.005 4.005 10 C -0.105 4.105 11 C -0.609 4.609 12 S 2.625 3.375 13 O -0.996 6.996 14 O -0.995 6.995 15 N -1.108 6.108 16 C 0.124 3.876 17 C -0.092 4.092 18 H 0.113 0.887 19 C -0.127 4.127 20 C -0.122 4.122 21 C -0.154 4.154 22 C 0.103 3.897 23 H 0.079 0.921 24 O -0.583 6.583 25 H 0.267 0.733 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.425 0.575 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.466 -4.815 3.480 32.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.162 1.162 6 H -0.211 1.211 7 C -0.583 4.583 8 H 0.047 0.953 9 C -0.043 4.043 10 C -0.144 4.144 11 C -0.741 4.741 12 S 2.721 3.279 13 O -0.986 6.986 14 O -0.985 6.985 15 N -0.870 5.870 16 C -0.001 4.001 17 C -0.112 4.112 18 H 0.131 0.869 19 C -0.164 4.164 20 C -0.160 4.160 21 C -0.192 4.192 22 C 0.044 3.956 23 H 0.097 0.903 24 O -0.391 6.391 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.176 0.824 31 H 0.169 0.831 32 H 0.261 0.739 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 30.336 -5.774 3.253 31.052 hybrid contribution 0.094 1.176 0.123 1.186 sum 30.430 -4.598 3.376 30.960 Atomic orbital electron populations 1.70088 1.08547 1.28349 1.52355 1.26135 0.95720 1.03961 0.93839 0.85570 0.79670 0.77469 0.79412 1.18873 1.16165 1.21060 1.21568 0.92387 0.93305 1.51055 0.95264 1.19503 0.93672 0.93424 0.97730 1.21188 0.90588 1.00512 1.02102 1.30496 1.05407 1.24301 1.13851 1.04262 0.73517 0.77488 0.72676 1.93532 1.84157 1.73816 1.47082 1.93533 1.83995 1.74651 1.46363 1.55278 1.24701 1.78396 1.28631 1.21254 0.93515 0.98270 0.87110 1.22355 0.93366 0.96127 0.99374 0.86903 1.22627 0.97066 0.95473 1.01278 1.22318 0.95969 0.98010 0.99673 1.22949 0.99550 0.96309 1.00379 1.22557 0.88993 0.97280 0.86809 0.90323 1.86537 1.39708 1.83148 1.29721 0.92402 0.94991 0.94973 0.92032 0.91845 0.82444 0.83081 0.73856 0.90091 0.91416 0.92977 0.90864 0.91672 0.90210 0.91119 0.89744 0.75690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 2 C 0.00 0.00 5.47 84.65 0.46 0.46 16 3 Si 0.96 43.57 27.47 68.60 1.88 45.45 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.55 -32.11 9.66 25.60 0.25 -31.86 16 8 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 9 C 0.00 -0.22 4.04 29.85 0.12 -0.10 16 10 C -0.10 -4.12 5.16 30.60 0.16 -3.96 16 11 C -0.61 -16.62 6.07 71.98 0.44 -16.19 16 12 S 2.62 74.22 5.46 -56.49 -0.31 73.92 16 13 O -1.00 -35.78 17.50 -127.65 -2.23 -38.01 16 14 O -1.00 -34.25 18.08 -127.65 -2.31 -36.56 16 15 N -1.11 -21.10 5.73 -187.48 -1.07 -22.17 16 16 C 0.12 2.20 4.76 86.38 0.41 2.61 16 17 C -0.09 -1.17 2.89 -9.72 -0.03 -1.20 16 18 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 19 C -0.13 -1.82 6.18 31.88 0.20 -1.62 16 20 C -0.12 -1.26 6.83 31.67 0.22 -1.04 16 21 C -0.15 -1.36 6.61 31.39 0.21 -1.15 16 22 C 0.10 1.09 4.14 31.39 0.13 1.22 16 23 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 24 O -0.58 -7.96 11.70 -148.98 -1.74 -9.71 16 25 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 26 H 0.03 1.37 7.57 -2.39 -0.02 1.35 16 27 H 0.03 1.40 7.20 -2.39 -0.02 1.39 16 28 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.16 3.40 8.14 -2.39 -0.02 3.38 16 31 H 0.15 3.43 8.14 -2.39 -0.02 3.41 16 32 H 0.42 6.15 8.62 -96.75 -0.83 5.32 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.55 7.10 -2.39 -0.02 1.54 16 35 H 0.05 1.00 8.00 -2.38 -0.02 0.98 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 37 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.69 7.96 -2.39 -0.02 0.67 16 40 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.39 2.28 9.11 -74.06 -0.67 1.60 16 Total: -1.00 -81.96 343.87 -3.46 -85.42 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -0.54 Total: 14.95 kcal Atomic # 6 Polarization: -55.39 SS G_CDS: 2.56 Total: -52.83 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -0.77 Total: -82.64 kcal Atomic # 8 Polarization: -77.99 SS G_CDS: -6.28 Total: -84.27 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.88 Total: 45.45 kcal Atomic # 16 Polarization: 74.22 SS G_CDS: -0.31 Total: 73.92 kcal Total: -81.96 -3.46 -85.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305100030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.362 kcal (2) G-P(sol) polarization free energy of solvation -81.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds