Wall clock time and date at job start Fri Apr 10 2020 14:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47158 * 179.97438 * 11 10 9 13 13 O 1.42101 * 110.53989 * 291.62293 * 12 11 10 14 14 O 1.42103 * 110.54472 * 68.36761 * 12 11 10 15 15 N 1.65598 * 104.45114 * 179.97438 * 12 11 10 16 16 C 1.47015 * 125.64829 * 269.69090 * 15 12 11 17 17 C 1.54340 * 107.26413 * 178.84819 * 16 15 12 18 18 C 1.55150 * 103.01961 * 338.14170 * 17 16 15 19 19 H 1.09004 * 111.00439 * 277.22909 * 18 17 16 20 20 C 1.53005 * 111.03498 * 153.39416 * 18 17 16 21 21 C 1.53002 * 109.47230 * 72.78669 * 20 18 17 22 22 O 1.42891 * 109.47355 * 179.97438 * 21 20 18 23 23 C 1.47427 * 125.64548 * 89.99700 * 15 12 11 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 30 30 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 31 31 H 1.08994 * 109.88418 * 298.39157 * 16 15 12 32 32 H 1.09004 * 109.88356 * 59.56221 * 16 15 12 33 33 H 1.09000 * 110.84925 * 219.67387 * 17 16 15 34 34 H 1.09004 * 110.66625 * 96.52466 * 17 16 15 35 35 H 1.09005 * 109.46760 * 192.78249 * 20 18 17 36 36 H 1.08993 * 109.47398 * 312.78207 * 20 18 17 37 37 H 1.09002 * 109.46719 * 299.99988 * 21 20 18 38 38 H 1.08999 * 109.46947 * 59.99306 * 21 20 18 39 39 H 0.96697 * 114.00543 * 179.97438 * 22 21 20 40 40 H 1.08998 * 110.36966 * 322.93372 * 23 15 12 41 41 H 1.09004 * 110.36229 * 85.25496 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 16 6.1561 -4.3468 0.0245 13 8 5.8543 -4.9775 1.2616 14 8 5.8656 -4.9834 -1.2123 15 7 7.8058 -4.2019 0.0310 16 6 8.6648 -4.1362 -1.1602 17 6 10.1187 -3.9748 -0.6681 18 6 9.9419 -3.3986 0.7616 19 1 9.7930 -2.3191 0.7321 20 6 11.1331 -3.7608 1.6509 21 6 12.3508 -2.9334 1.2344 22 8 13.4631 -3.2713 2.0653 23 6 8.6566 -4.1237 1.2325 24 1 -0.4849 0.8400 0.0004 25 1 3.8786 -0.6821 -0.8838 26 1 3.8711 -0.6785 0.8962 27 1 3.6545 -3.1486 0.9003 28 1 3.6618 -3.1522 -0.8796 29 1 5.9188 -2.1245 -0.8715 30 1 5.9108 -2.1211 0.9084 31 1 8.5672 -5.0548 -1.7388 32 1 8.3852 -3.2786 -1.7721 33 1 10.6670 -3.2763 -1.3003 34 1 10.6232 -4.9405 -0.6350 35 1 10.8877 -3.5476 2.6914 36 1 11.3594 -4.8213 1.5409 37 1 12.5961 -3.1465 0.1939 38 1 12.1244 -1.8729 1.3444 39 1 14.2720 -2.7841 1.8571 40 1 8.1596 -3.5469 2.0124 41 1 8.8960 -5.1240 1.5935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331186796.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:09 Heat of formation + Delta-G solvation = -140.708699 kcal Electronic energy + Delta-G solvation = -21448.728267 eV Core-core repulsion = 18069.081576 eV Total energy + Delta-G solvation = -3379.646691 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.22424 -37.20148 -36.98054 -35.81725 -34.82405 -33.33068 -32.22557 -29.94070 -28.40042 -28.16790 -23.71339 -23.21033 -22.54585 -20.66281 -20.43794 -18.89920 -17.86190 -17.51432 -16.98758 -16.61773 -16.00501 -15.72969 -15.36685 -14.61535 -14.47944 -14.20535 -13.89121 -13.79150 -13.46183 -13.04339 -12.91376 -12.44193 -12.36455 -12.15058 -12.00381 -11.90992 -11.79061 -11.67629 -11.56743 -11.34906 -11.04514 -11.01290 -10.99306 -10.95933 -10.37265 -10.11242 -9.89542 -9.74988 -9.29606 -9.03772 -8.60096 -6.09673 -4.08984 0.32072 2.67394 3.25155 3.32701 3.34707 3.65514 3.93656 4.05717 4.13359 4.38534 4.38955 4.57723 4.72553 4.80320 4.97202 4.98439 5.00713 5.04305 5.12048 5.22611 5.24068 5.30468 5.45927 5.48246 5.56520 5.68663 5.72714 5.75910 5.89326 5.97726 6.08717 6.23748 6.24918 6.65326 7.10792 7.17741 7.24875 7.69636 8.46409 8.94793 9.51346 11.03652 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.003409 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.847735 B = 8210.696447 C = 9090.397588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.098 4.098 11 C -0.615 4.615 12 S 2.616 3.384 13 O -0.954 6.954 14 O -0.955 6.955 15 N -1.018 6.018 16 C 0.119 3.881 17 C -0.126 4.126 18 C -0.100 4.100 19 H 0.089 0.911 20 C -0.111 4.111 21 C 0.076 3.924 22 O -0.577 6.577 23 C 0.127 3.873 24 H 0.264 0.736 25 H 0.015 0.985 26 H 0.020 0.980 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.380 0.620 40 H 0.078 0.922 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.300 -5.099 0.157 27.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.137 4.137 11 C -0.746 4.746 12 S 2.713 3.287 13 O -0.945 6.945 14 O -0.945 6.945 15 N -0.855 5.855 16 C -0.006 4.006 17 C -0.165 4.165 18 C -0.120 4.120 19 H 0.107 0.893 20 C -0.149 4.149 21 C -0.002 4.002 22 O -0.382 6.382 23 C 0.002 3.998 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.038 0.962 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.227 0.773 40 H 0.096 0.904 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 26.130 -6.247 0.412 26.870 hybrid contribution 0.850 2.134 -0.337 2.322 sum 26.980 -4.113 0.075 27.292 Atomic orbital electron populations 1.69910 1.06283 1.26991 1.50672 1.25030 0.94764 0.99177 0.94458 0.86770 0.80309 0.83615 0.78520 1.20222 1.21241 1.19087 1.21138 0.89241 0.94790 1.51361 0.90714 1.19526 0.97336 0.90693 0.96695 1.21320 0.86650 1.02970 1.02803 1.30642 1.09329 1.23594 1.11058 1.04986 0.71419 0.78088 0.74194 1.93577 1.82312 1.73264 1.45331 1.93569 1.82520 1.73072 1.45384 1.58822 1.23473 1.90500 1.12734 1.21689 0.89757 1.02014 0.87132 1.22758 0.95807 1.01912 0.95973 1.22363 0.93961 1.00827 0.94871 0.89275 1.21448 0.92321 1.00872 1.00252 1.22193 0.86673 0.97994 0.93337 1.86471 1.22178 1.68604 1.60975 1.21966 0.90109 1.00758 0.86962 0.92609 0.96635 0.96196 0.90967 0.90981 0.85493 0.85505 0.90885 0.91543 0.90135 0.90372 0.90613 0.90686 0.93485 0.93580 0.77346 0.90395 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.53 -15.06 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 9 C 0.00 -0.09 4.04 -27.88 -0.11 -0.20 16 10 C -0.10 -1.92 5.16 -26.74 -0.14 -2.06 16 11 C -0.61 -8.96 6.18 37.15 0.23 -8.73 16 12 S 2.62 38.39 5.65 -107.50 -0.61 37.78 16 13 O -0.95 -16.73 17.61 -57.54 -1.01 -17.74 16 14 O -0.95 -16.71 17.60 -57.54 -1.01 -17.72 16 15 N -1.02 -11.27 3.62 -111.42 -0.40 -11.67 16 16 C 0.12 1.06 6.89 -3.06 -0.02 1.04 16 17 C -0.13 -0.79 5.90 -24.89 -0.15 -0.94 16 18 C -0.10 -0.67 3.01 -88.47 -0.27 -0.94 16 19 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 20 C -0.11 -0.72 5.09 -26.73 -0.14 -0.85 16 21 C 0.08 0.43 6.95 37.16 0.26 0.69 16 22 O -0.58 -4.02 13.66 -35.23 -0.48 -4.50 16 23 C 0.13 1.17 6.36 -2.53 -0.02 1.15 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.02 0.35 7.58 -51.93 -0.39 -0.04 16 26 H 0.02 0.46 7.19 -51.93 -0.37 0.08 16 27 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.13 1.60 8.14 -51.93 -0.42 1.17 16 30 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.46 7.91 -51.93 -0.41 0.05 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.52 7.97 -51.93 -0.41 0.10 16 37 H 0.05 0.22 7.75 -51.93 -0.40 -0.18 16 38 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.38 0.96 9.12 45.56 0.42 1.37 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.65 8.04 -51.93 -0.42 0.24 16 LS Contribution 346.45 15.07 5.22 5.22 Total: -1.00 -36.83 346.45 -9.20 -46.03 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -6.23 Total: -2.81 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: -0.78 Total: -24.36 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.37 Total: -38.64 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -2.51 Total: -39.96 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: 38.39 SS G_CDS: -0.61 Total: 37.78 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.83 -9.20 -46.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331186796.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.676 kcal (2) G-P(sol) polarization free energy of solvation -36.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds