Wall clock time and date at job start Fri Apr 10 2020 14:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47158 * 179.97438 * 11 10 9 13 13 O 1.42101 * 110.53989 * 291.62293 * 12 11 10 14 14 O 1.42103 * 110.54472 * 68.36761 * 12 11 10 15 15 N 1.65598 * 104.45114 * 179.97438 * 12 11 10 16 16 C 1.47015 * 125.64829 * 269.69090 * 15 12 11 17 17 C 1.54340 * 107.26413 * 178.84819 * 16 15 12 18 18 C 1.55150 * 103.01961 * 338.14170 * 17 16 15 19 19 H 1.09004 * 111.00439 * 277.22909 * 18 17 16 20 20 C 1.53005 * 111.03498 * 153.39416 * 18 17 16 21 21 C 1.53002 * 109.47230 * 72.78669 * 20 18 17 22 22 O 1.42891 * 109.47355 * 179.97438 * 21 20 18 23 23 C 1.47427 * 125.64548 * 89.99700 * 15 12 11 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 30 30 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 31 31 H 1.08994 * 109.88418 * 298.39157 * 16 15 12 32 32 H 1.09004 * 109.88356 * 59.56221 * 16 15 12 33 33 H 1.09000 * 110.84925 * 219.67387 * 17 16 15 34 34 H 1.09004 * 110.66625 * 96.52466 * 17 16 15 35 35 H 1.09005 * 109.46760 * 192.78249 * 20 18 17 36 36 H 1.08993 * 109.47398 * 312.78207 * 20 18 17 37 37 H 1.09002 * 109.46719 * 299.99988 * 21 20 18 38 38 H 1.08999 * 109.46947 * 59.99306 * 21 20 18 39 39 H 0.96697 * 114.00543 * 179.97438 * 22 21 20 40 40 H 1.08998 * 110.36966 * 322.93372 * 23 15 12 41 41 H 1.09004 * 110.36229 * 85.25496 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 16 6.1561 -4.3468 0.0245 13 8 5.8543 -4.9775 1.2616 14 8 5.8656 -4.9834 -1.2123 15 7 7.8058 -4.2019 0.0310 16 6 8.6648 -4.1362 -1.1602 17 6 10.1187 -3.9748 -0.6681 18 6 9.9419 -3.3986 0.7616 19 1 9.7930 -2.3191 0.7321 20 6 11.1331 -3.7608 1.6509 21 6 12.3508 -2.9334 1.2344 22 8 13.4631 -3.2713 2.0653 23 6 8.6566 -4.1237 1.2325 24 1 -0.4849 0.8400 0.0004 25 1 3.8786 -0.6821 -0.8838 26 1 3.8711 -0.6785 0.8962 27 1 3.6545 -3.1486 0.9003 28 1 3.6618 -3.1522 -0.8796 29 1 5.9188 -2.1245 -0.8715 30 1 5.9108 -2.1211 0.9084 31 1 8.5672 -5.0548 -1.7388 32 1 8.3852 -3.2786 -1.7721 33 1 10.6670 -3.2763 -1.3003 34 1 10.6232 -4.9405 -0.6350 35 1 10.8877 -3.5476 2.6914 36 1 11.3594 -4.8213 1.5409 37 1 12.5961 -3.1465 0.1939 38 1 12.1244 -1.8729 1.3444 39 1 14.2720 -2.7841 1.8571 40 1 8.1596 -3.5469 2.0124 41 1 8.8960 -5.1240 1.5935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331186796.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:07 Heat of formation + Delta-G solvation = -170.459690 kcal Electronic energy + Delta-G solvation = -21450.018366 eV Core-core repulsion = 18069.081576 eV Total energy + Delta-G solvation = -3380.936791 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.84270 -38.25827 -37.66823 -37.09850 -36.52987 -34.26705 -33.94525 -30.57295 -30.16832 -28.77118 -25.43441 -23.77182 -23.31535 -22.14003 -21.18201 -19.95875 -19.00254 -18.70701 -18.12179 -17.61326 -17.23604 -16.63374 -16.24630 -15.96379 -15.82974 -15.18265 -14.87722 -14.62077 -14.48492 -14.17371 -14.02936 -13.71147 -13.64556 -13.28835 -13.25294 -13.21341 -12.95188 -12.71317 -12.58240 -12.55961 -12.28614 -11.91049 -11.85784 -11.66859 -11.55038 -11.49393 -11.43294 -11.30939 -10.78782 -10.76312 -9.93951 -8.31091 -6.37412 -0.83919 1.35922 1.38879 1.50471 1.65747 2.35516 2.78027 2.98981 3.03939 3.35829 3.48653 3.69749 3.74856 3.90121 4.11440 4.27633 4.31355 4.32996 4.42492 4.52139 4.54978 4.59036 4.66525 4.80853 4.83254 4.87583 4.92055 4.95892 5.03461 5.11895 5.22349 5.27667 5.31331 5.42017 5.45384 5.48449 5.60890 6.23704 6.70785 6.96340 7.27265 8.85984 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.003409 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.847735 B = 8210.696447 C = 9090.397588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.000 4.000 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.238 1.238 7 C -0.546 4.546 8 H 0.029 0.971 9 C -0.004 4.004 10 C -0.105 4.105 11 C -0.606 4.606 12 S 2.632 3.368 13 O -0.990 6.990 14 O -0.989 6.989 15 N -1.014 6.014 16 C 0.106 3.894 17 C -0.118 4.118 18 C -0.088 4.088 19 H 0.103 0.897 20 C -0.110 4.110 21 C 0.075 3.925 22 O -0.601 6.601 23 C 0.114 3.886 24 H 0.267 0.733 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.397 0.603 40 H 0.083 0.917 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.833 -3.021 -0.186 30.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.161 1.161 7 C -0.584 4.584 8 H 0.047 0.953 9 C -0.042 4.042 10 C -0.144 4.144 11 C -0.737 4.737 12 S 2.731 3.269 13 O -0.980 6.980 14 O -0.979 6.979 15 N -0.853 5.853 16 C -0.018 4.018 17 C -0.156 4.156 18 C -0.108 4.108 19 H 0.122 0.878 20 C -0.148 4.148 21 C -0.003 4.003 22 O -0.410 6.410 23 C -0.011 4.011 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.173 0.827 30 H 0.171 0.829 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.247 0.753 40 H 0.101 0.899 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 29.686 -4.194 0.065 29.981 hybrid contribution -0.266 1.385 -0.222 1.427 sum 29.420 -2.809 -0.157 29.554 Atomic orbital electron populations 1.70086 1.08561 1.28363 1.52272 1.26141 0.95725 1.03980 0.93826 0.85566 0.79663 0.77441 0.79421 1.18859 1.21098 1.16124 1.21560 0.92374 0.93292 1.51145 0.95298 1.19496 0.93671 0.93314 0.97754 1.21192 0.90525 1.00589 1.02091 1.30522 1.05272 1.24066 1.13839 1.04144 0.72193 0.77877 0.72688 1.93527 1.83536 1.74339 1.46602 1.93522 1.83705 1.74116 1.46580 1.58463 1.22212 1.90211 1.14452 1.22002 0.90980 1.02379 0.86485 1.22777 0.94143 1.02831 0.95895 1.22293 0.92433 1.01254 0.94845 0.87835 1.21414 0.92823 1.00697 0.99847 1.22237 0.85975 0.98258 0.93806 1.86419 1.23413 1.69476 1.61710 1.22238 0.91150 1.01211 0.86485 0.92395 0.94984 0.94927 0.92007 0.91918 0.82686 0.82865 0.91821 0.89942 0.87549 0.90138 0.91374 0.91450 0.92079 0.92575 0.75329 0.89886 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 2 C 0.00 0.00 5.47 84.66 0.46 0.46 16 3 Si 0.96 43.06 27.47 68.60 1.88 44.94 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16 7 C -0.55 -31.81 9.66 25.60 0.25 -31.56 16 8 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 9 C 0.00 -0.17 4.04 29.85 0.12 -0.05 16 10 C -0.10 -4.05 5.16 30.59 0.16 -3.89 16 11 C -0.61 -16.11 6.18 71.98 0.44 -15.66 16 12 S 2.63 75.07 5.65 -56.49 -0.32 74.75 16 13 O -0.99 -34.77 17.61 -127.65 -2.25 -37.02 16 14 O -0.99 -34.48 17.60 -127.65 -2.25 -36.73 16 15 N -1.01 -20.52 3.62 -506.41 -1.83 -22.36 16 16 C 0.11 1.62 6.89 86.74 0.60 2.22 16 17 C -0.12 -1.08 5.90 31.79 0.19 -0.90 16 18 C -0.09 -0.90 3.01 -9.40 -0.03 -0.93 16 19 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 20 C -0.11 -1.17 5.09 30.60 0.16 -1.01 16 21 C 0.07 0.63 6.95 71.98 0.50 1.13 16 22 O -0.60 -7.07 13.66 -148.98 -2.03 -9.11 16 23 C 0.11 1.87 6.36 86.85 0.55 2.42 16 24 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 25 H 0.03 1.35 7.58 -2.38 -0.02 1.33 16 26 H 0.03 1.40 7.19 -2.39 -0.02 1.38 16 27 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 28 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 29 H 0.16 3.28 8.14 -2.39 -0.02 3.26 16 30 H 0.15 3.29 8.14 -2.39 -0.02 3.27 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 0.73 7.91 -2.38 -0.02 0.71 16 35 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.07 0.81 7.97 -2.39 -0.02 0.79 16 37 H 0.06 0.34 7.75 -2.39 -0.02 0.33 16 38 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.40 1.12 9.12 -74.06 -0.68 0.44 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.16 8.04 -2.39 -0.02 1.14 16 Total: -1.00 -81.93 346.45 -2.83 -84.76 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.27 Total: 8.55 kcal Atomic # 6 Polarization: -51.18 SS G_CDS: 3.40 Total: -47.78 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -1.53 Total: -82.37 kcal Atomic # 8 Polarization: -76.32 SS G_CDS: -6.53 Total: -82.85 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.94 kcal Atomic # 16 Polarization: 75.07 SS G_CDS: -0.32 Total: 74.75 kcal Total: -81.93 -2.83 -84.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331186796.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.698 kcal (2) G-P(sol) polarization free energy of solvation -81.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds