Wall clock time and date at job start Fri Apr 10 2020 14:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99939 * 2 1 4 4 H 1.48503 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46806 * 299.99800 * 3 2 1 6 6 H 1.48498 * 109.47181 * 59.99498 * 3 2 1 7 7 C 1.37881 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00148 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99702 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47132 * 180.02562 * 10 9 7 12 12 S 1.81410 * 109.46772 * 180.02562 * 11 10 9 13 13 O 1.42091 * 110.54300 * 68.37664 * 12 11 10 14 14 O 1.42103 * 110.54111 * 291.62330 * 12 11 10 15 15 N 1.65599 * 104.44552 * 180.02562 * 12 11 10 16 16 C 1.46926 * 120.63319 * 90.00141 * 15 12 11 17 17 C 1.53191 * 108.89109 * 233.67818 * 16 15 12 18 18 C 1.53035 * 109.31327 * 305.29292 * 17 16 15 19 19 C 1.53038 * 109.54175 * 61.36680 * 18 17 16 20 20 H 1.09002 * 109.49557 * 58.58503 * 19 18 17 21 21 C 1.53001 * 109.49833 * 178.68412 * 19 18 17 22 22 O 1.42890 * 109.47072 * 294.99743 * 21 19 18 23 23 C 1.47207 * 120.81135 * 270.14150 * 15 12 11 24 24 H 0.97001 * 120.00358 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46941 * 60.00458 * 9 7 2 26 26 H 1.08998 * 109.47319 * 299.99823 * 9 7 2 27 27 H 1.09005 * 109.46994 * 59.99641 * 10 9 7 28 28 H 1.09008 * 109.46850 * 300.00619 * 10 9 7 29 29 H 1.09000 * 109.47045 * 60.00325 * 11 10 9 30 30 H 1.08998 * 109.47192 * 299.99703 * 11 10 9 31 31 H 1.09002 * 109.58861 * 113.81820 * 16 15 12 32 32 H 1.08996 * 109.58519 * 353.53711 * 16 15 12 33 33 H 1.09003 * 109.49975 * 65.24379 * 17 16 15 34 34 H 1.09000 * 109.49553 * 185.30642 * 17 16 15 35 35 H 1.09003 * 109.46332 * 181.39145 * 18 17 16 36 36 H 1.09004 * 109.45942 * 301.34050 * 18 17 16 37 37 H 1.08991 * 109.47136 * 55.00315 * 21 19 18 38 38 H 1.09003 * 109.46920 * 175.00013 * 21 19 18 39 39 H 0.96701 * 114.00383 * 180.02562 * 22 21 19 40 40 H 1.08996 * 109.53610 * 6.53508 * 23 15 12 41 41 H 1.08997 * 109.56315 * 246.15953 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4803 -4.9871 0.0033 12 16 2.6593 -6.3659 0.0053 13 8 3.3551 -6.4252 1.2428 14 8 3.3569 -6.4272 -1.2312 15 7 1.7089 -7.7220 0.0050 16 6 1.2806 -8.3358 -1.2594 17 6 -0.2447 -8.4775 -1.2503 18 6 -0.6736 -9.2520 -0.0020 19 6 -0.2530 -8.4787 1.2499 20 1 -0.7102 -7.4893 1.2371 21 6 -0.7112 -9.2377 2.4969 22 8 -2.1391 -9.2716 2.5360 23 6 1.2723 -8.3370 1.2692 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6248 -2.5563 0.8919 27 1 2.8720 -3.6035 0.8927 28 1 2.8721 -3.6051 -0.8873 29 1 0.8540 -5.0454 -0.8869 30 1 0.8534 -5.0443 0.8931 31 1 1.7384 -9.3197 -1.3615 32 1 1.5839 -7.7034 -2.0937 33 1 -0.7020 -7.4881 -1.2395 34 1 -0.5652 -9.0167 -2.1417 35 1 -1.7566 -9.3757 -0.0056 36 1 -0.1965 -10.2321 -0.0010 37 1 -0.3242 -10.2561 2.4650 38 1 -0.3352 -8.7339 3.3874 39 1 -2.5007 -9.7380 3.3020 40 1 1.5698 -7.7034 2.1046 41 1 1.7294 -9.3210 1.3733 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331267863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:08:38 Heat of formation + Delta-G solvation = -147.077205 kcal Electronic energy + Delta-G solvation = -22051.395064 eV Core-core repulsion = 18671.472214 eV Total energy + Delta-G solvation = -3379.922850 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.14380 -36.99977 -36.74046 -35.76120 -34.66225 -32.75127 -32.17857 -31.82298 -27.80351 -26.17543 -24.72232 -23.67107 -22.28607 -20.74111 -20.09798 -18.80902 -17.67184 -17.61898 -16.61695 -16.14627 -15.72765 -15.45165 -14.86510 -14.67221 -14.56944 -14.43253 -14.13490 -13.74704 -13.37655 -12.93688 -12.60619 -12.41559 -12.28671 -11.95173 -11.90327 -11.77813 -11.75302 -11.34281 -11.27515 -11.11206 -10.93412 -10.82620 -10.75303 -10.68951 -10.38402 -10.20638 -9.95260 -9.49468 -9.21369 -8.92091 -8.40878 -6.05383 -4.08469 0.42593 2.68914 3.29619 3.37123 3.42095 3.87031 4.01621 4.31982 4.33277 4.42921 4.57866 4.70413 4.85596 4.95990 5.05247 5.14544 5.18555 5.18954 5.20522 5.31148 5.34139 5.43148 5.56563 5.57583 5.72902 5.88156 5.89472 5.99350 6.06304 6.16349 6.25493 6.45620 6.45837 6.87560 7.33596 7.57643 7.67316 7.92705 8.33192 8.98040 9.56332 11.05863 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.003811 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.442082 B = 7346.329095 C = 8012.587486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.106 4.106 11 C -0.609 4.609 12 S 2.598 3.402 13 O -0.960 6.960 14 O -0.959 6.959 15 N -1.003 6.003 16 C 0.120 3.880 17 C -0.139 4.139 18 C -0.106 4.106 19 C -0.108 4.108 20 H 0.086 0.914 21 C 0.081 3.919 22 O -0.571 6.571 23 C 0.129 3.871 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.379 0.621 40 H 0.093 0.907 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.719 -22.204 2.260 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.145 4.145 11 C -0.740 4.740 12 S 2.696 3.304 13 O -0.951 6.951 14 O -0.949 6.949 15 N -0.839 5.839 16 C -0.005 4.005 17 C -0.178 4.178 18 C -0.144 4.144 19 C -0.128 4.128 20 H 0.105 0.895 21 C 0.003 3.997 22 O -0.376 6.376 23 C 0.004 3.996 24 H 0.070 0.930 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.226 0.774 40 H 0.111 0.889 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.805 -21.791 1.693 21.931 hybrid contribution -0.454 0.842 0.558 1.108 sum -2.260 -20.949 2.251 21.191 Atomic orbital electron populations 1.69966 1.06098 1.26666 1.50680 1.25021 0.94875 0.99372 0.95100 0.86503 0.80199 0.83522 0.77619 1.19592 1.20934 1.20942 1.21295 0.93286 0.90885 1.50942 0.92319 1.19067 0.93529 0.90465 0.97734 1.21503 0.99373 0.91742 1.01889 1.30605 1.16378 1.15891 1.11162 1.05476 0.75906 0.74909 0.74159 1.93553 1.70394 1.85859 1.45261 1.93560 1.70262 1.85825 1.45294 1.57945 1.70265 1.44246 1.11422 1.21420 0.94666 0.99480 0.84976 1.21977 0.95675 1.01654 0.98480 1.21440 1.01604 0.98128 0.93198 1.21575 0.95616 1.01001 0.94622 0.89549 1.22117 0.81187 0.98964 0.97451 1.86482 1.20335 1.80400 1.50403 1.21319 0.93069 0.99744 0.85513 0.92952 0.96117 0.96135 0.91635 0.91625 0.85480 0.85544 0.91201 0.88994 0.91106 0.90640 0.90975 0.92095 0.93474 0.93196 0.77433 0.88902 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.53 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 10 C -0.11 -2.17 5.16 -26.73 -0.14 -2.31 16 11 C -0.61 -9.61 6.18 37.15 0.23 -9.38 16 12 S 2.60 39.30 5.42 -107.50 -0.58 38.72 16 13 O -0.96 -16.88 16.75 -57.54 -0.96 -17.85 16 14 O -0.96 -16.97 16.72 -57.54 -0.96 -17.93 16 15 N -1.00 -11.65 3.23 -113.31 -0.37 -12.02 16 16 C 0.12 1.19 6.30 -3.71 -0.02 1.17 16 17 C -0.14 -1.20 6.08 -26.61 -0.16 -1.36 16 18 C -0.11 -0.91 5.08 -26.69 -0.14 -1.04 16 19 C -0.11 -0.99 2.58 -90.50 -0.23 -1.22 16 20 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 21 C 0.08 0.62 6.43 37.16 0.24 0.86 16 22 O -0.57 -4.81 13.17 -35.23 -0.46 -5.27 16 23 C 0.13 1.28 5.61 -3.56 -0.02 1.26 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 29 H 0.13 1.81 8.14 -51.92 -0.42 1.39 16 30 H 0.13 1.81 8.14 -51.92 -0.42 1.39 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.95 7.09 -51.93 -0.37 0.58 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.66 7.79 -51.93 -0.40 0.26 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 1.49 9.12 45.56 0.42 1.91 16 40 H 0.09 0.94 7.12 -51.93 -0.37 0.57 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 343.56 15.07 5.18 5.18 Total: -1.00 -35.62 343.56 -9.43 -45.05 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -6.19 Total: -1.46 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: -0.79 Total: -25.08 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.37 Total: -38.01 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -2.39 Total: -41.05 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 39.30 SS G_CDS: -0.58 Total: 38.72 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.62 -9.43 -45.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331267863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.031 kcal (2) G-P(sol) polarization free energy of solvation -35.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds