Wall clock time and date at job start Fri Apr 10 2020 14:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00180 * 2 1 4 4 H 1.48504 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47126 * 299.99672 * 3 2 1 6 6 H 1.48501 * 109.47209 * 60.00045 * 3 2 1 7 7 C 1.37882 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00398 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99696 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47047 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47249 * 179.97438 * 10 9 7 12 12 S 1.81406 * 109.47321 * 179.97438 * 11 10 9 13 13 O 1.42097 * 110.54092 * 68.37419 * 12 11 10 14 14 O 1.42098 * 110.54149 * 291.62458 * 12 11 10 15 15 N 1.65596 * 104.44961 * 179.97438 * 12 11 10 16 16 C 1.47420 * 125.64925 * 83.82407 * 15 12 11 17 17 C 1.54906 * 104.83542 * 204.09158 * 16 15 12 18 18 C 1.55156 * 101.61523 * 322.96994 * 17 16 15 19 19 C 1.47024 * 125.64945 * 263.77755 * 15 12 11 20 20 H 1.09002 * 109.88008 * 59.55999 * 19 15 12 21 21 C 1.53001 * 109.88248 * 298.39704 * 19 15 12 22 22 C 1.53000 * 109.46953 * 176.52066 * 21 19 15 23 23 O 1.42895 * 109.46758 * 185.08693 * 22 21 19 24 24 H 0.96993 * 119.99761 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47453 * 59.99942 * 9 7 2 26 26 H 1.09004 * 109.47136 * 299.99184 * 9 7 2 27 27 H 1.09000 * 109.47672 * 59.99479 * 10 9 7 28 28 H 1.09009 * 109.46790 * 299.99550 * 10 9 7 29 29 H 1.08996 * 109.47273 * 59.99750 * 11 10 9 30 30 H 1.09000 * 109.46792 * 299.99797 * 11 10 9 31 31 H 1.08996 * 110.37347 * 85.25046 * 16 15 12 32 32 H 1.09005 * 110.46079 * 322.97633 * 16 15 12 33 33 H 1.09004 * 111.00798 * 81.06101 * 17 16 15 34 34 H 1.08994 * 111.01051 * 204.87789 * 17 16 15 35 35 H 1.08997 * 110.72195 * 153.88130 * 18 17 16 36 36 H 1.08995 * 110.72271 * 277.15476 * 18 17 16 37 37 H 1.08991 * 109.46971 * 296.52476 * 21 19 15 38 38 H 1.09006 * 109.47042 * 56.52425 * 21 19 15 39 39 H 1.08998 * 109.47297 * 305.09146 * 22 21 19 40 40 H 1.09001 * 109.46639 * 65.09009 * 22 21 19 41 41 H 0.96701 * 114.00195 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 16 2.6590 -6.3660 0.0032 13 8 3.3557 -6.4257 1.2403 14 8 3.3558 -6.4270 -1.2337 15 7 1.7086 -7.7221 0.0046 16 6 1.1096 -8.3527 -1.1857 17 6 -0.1163 -9.1317 -0.6473 18 6 0.4174 -9.6523 0.7134 19 6 1.3232 -8.4972 1.1930 20 1 0.7758 -7.8613 1.8888 21 6 2.5718 -9.0629 1.8727 22 6 2.1677 -9.7938 3.1546 23 8 3.3411 -10.2194 3.8502 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8713 -3.6040 0.8922 28 1 2.8726 -3.6048 -0.8878 29 1 0.8539 -5.0455 -0.8877 30 1 0.8532 -5.0442 0.8923 31 1 1.8195 -9.0368 -1.6505 32 1 0.7924 -7.5932 -1.9004 33 1 -0.9691 -8.4680 -0.5044 34 1 -0.3744 -9.9592 -1.3080 35 1 -0.4028 -9.8158 1.4124 36 1 0.9967 -10.5654 0.5767 37 1 3.0684 -9.7600 1.1980 38 1 3.2526 -8.2477 2.1185 39 1 1.5922 -9.1211 3.7905 40 1 1.5602 -10.6627 2.9013 41 1 3.1602 -10.6915 4.6746 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494323417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:08:49 Heat of formation + Delta-G solvation = -140.241304 kcal Electronic energy + Delta-G solvation = -21921.116418 eV Core-core repulsion = 18541.489995 eV Total energy + Delta-G solvation = -3379.626423 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.19853 -37.03141 -36.82112 -35.74689 -34.67333 -32.34795 -32.17267 -31.14895 -27.80881 -27.32655 -23.86346 -23.27033 -22.05480 -20.99799 -20.48565 -18.80597 -17.80647 -17.28142 -16.75171 -16.32621 -15.74522 -15.40978 -15.32049 -14.48888 -14.37224 -14.16059 -13.99641 -13.57159 -13.40804 -12.80180 -12.60513 -12.41799 -12.24679 -11.92258 -11.78617 -11.75901 -11.64604 -11.43530 -11.29172 -11.19746 -11.00896 -10.93686 -10.86452 -10.71756 -10.40096 -10.07526 -9.96228 -9.52569 -9.22285 -8.92579 -8.41736 -6.06446 -4.09388 0.40766 2.72343 3.29198 3.36680 3.41913 3.90697 4.06552 4.10233 4.27001 4.42356 4.55669 4.67714 4.89825 5.00218 5.08435 5.10816 5.14552 5.19728 5.26730 5.28355 5.30205 5.46718 5.54135 5.59752 5.65560 5.85205 5.90312 5.92131 6.13900 6.20051 6.31595 6.36901 6.44309 6.86427 7.44305 7.56258 7.65864 7.91763 8.32231 8.97091 9.55437 11.04855 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023167 B = 0.003522 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.310742 B = 7948.035896 C = 8340.154355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.610 3.390 13 O -0.953 6.953 14 O -0.957 6.957 15 N -1.012 6.012 16 C 0.120 3.880 17 C -0.132 4.132 18 C -0.127 4.127 19 C 0.158 3.842 20 H 0.077 0.923 21 C -0.157 4.157 22 C 0.082 3.918 23 O -0.573 6.573 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.403 -22.850 2.677 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.740 4.740 12 S 2.709 3.291 13 O -0.943 6.943 14 O -0.948 6.948 15 N -0.848 5.848 16 C -0.005 4.005 17 C -0.171 4.171 18 C -0.166 4.166 19 C 0.052 3.948 20 H 0.095 0.905 21 C -0.196 4.196 22 C 0.004 3.996 23 O -0.378 6.378 24 H 0.070 0.930 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.244 -22.389 2.142 22.526 hybrid contribution -0.694 0.920 0.447 1.236 sum -1.939 -21.469 2.589 21.711 Atomic orbital electron populations 1.69967 1.06100 1.26672 1.50722 1.25025 0.94893 0.99400 0.95092 0.86495 0.80216 0.83467 0.77618 1.19571 1.20931 1.20931 1.21297 0.93313 0.90868 1.50904 0.92291 1.19067 0.93525 0.90464 0.97714 1.21510 0.99409 0.91670 1.01964 1.30585 1.16454 1.15836 1.11107 1.05161 0.75423 0.74319 0.74235 1.93525 1.70218 1.85525 1.45058 1.93567 1.69891 1.85761 1.45544 1.58852 1.70063 1.42606 1.13321 1.21962 0.94363 0.97100 0.87090 1.22805 0.97573 1.00099 0.96633 1.22787 0.98854 0.97604 0.97324 1.21176 0.94464 0.92644 0.86557 0.90461 1.22316 0.99099 1.02461 0.95726 1.22071 0.86982 0.97154 0.93386 1.86517 1.32754 1.78355 1.40149 0.92955 0.96128 0.96128 0.91539 0.91615 0.85589 0.85465 0.91237 0.90555 0.90357 0.90018 0.90146 0.90419 0.91033 0.87326 0.93465 0.93788 0.77620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 10 C -0.11 -2.19 5.16 -26.73 -0.14 -2.33 16 11 C -0.61 -9.64 6.18 37.16 0.23 -9.41 16 12 S 2.61 40.44 5.61 -107.50 -0.60 39.84 16 13 O -0.95 -16.97 14.98 -57.54 -0.86 -17.83 16 14 O -0.96 -17.55 17.70 -57.54 -1.02 -18.57 16 15 N -1.01 -12.03 3.32 -104.36 -0.35 -12.37 16 16 C 0.12 1.15 6.97 -2.53 -0.02 1.13 16 17 C -0.13 -0.91 7.08 -24.58 -0.17 -1.08 16 18 C -0.13 -0.89 5.63 -24.84 -0.14 -1.03 16 19 C 0.16 1.59 3.05 -66.90 -0.20 1.39 16 20 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 21 C -0.16 -1.83 5.02 -26.73 -0.13 -1.97 16 22 C 0.08 0.76 6.80 37.16 0.25 1.01 16 23 O -0.57 -5.99 13.66 -35.23 -0.48 -6.47 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 29 H 0.13 1.79 8.14 -51.93 -0.42 1.36 16 30 H 0.13 1.81 8.14 -51.92 -0.42 1.39 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.51 7.79 -51.93 -0.40 0.10 16 37 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 38 H 0.11 1.63 5.51 -51.93 -0.29 1.35 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.04 0.30 7.59 -51.93 -0.39 -0.09 16 41 H 0.38 1.99 9.12 45.56 0.42 2.40 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -36.18 344.82 -9.40 -45.58 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.13 Total: -0.78 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -0.88 Total: -25.33 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.39 Total: -38.29 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -2.36 Total: -42.87 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 40.44 SS G_CDS: -0.60 Total: 39.84 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.18 -9.40 -45.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494323417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.660 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds