Wall clock time and date at job start Fri Apr 10 2020 14:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00180 * 2 1 4 4 H 1.48504 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47126 * 299.99672 * 3 2 1 6 6 H 1.48501 * 109.47209 * 60.00045 * 3 2 1 7 7 C 1.37882 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00398 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99696 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47047 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47249 * 179.97438 * 10 9 7 12 12 S 1.81406 * 109.47321 * 179.97438 * 11 10 9 13 13 O 1.42097 * 110.54092 * 68.37419 * 12 11 10 14 14 O 1.42098 * 110.54149 * 291.62458 * 12 11 10 15 15 N 1.65596 * 104.44961 * 179.97438 * 12 11 10 16 16 C 1.47420 * 125.64925 * 83.82407 * 15 12 11 17 17 C 1.54906 * 104.83542 * 204.09158 * 16 15 12 18 18 C 1.55156 * 101.61523 * 322.96994 * 17 16 15 19 19 C 1.47024 * 125.64945 * 263.77755 * 15 12 11 20 20 H 1.09002 * 109.88008 * 59.55999 * 19 15 12 21 21 C 1.53001 * 109.88248 * 298.39704 * 19 15 12 22 22 C 1.53000 * 109.46953 * 176.52066 * 21 19 15 23 23 O 1.42895 * 109.46758 * 185.08693 * 22 21 19 24 24 H 0.96993 * 119.99761 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47453 * 59.99942 * 9 7 2 26 26 H 1.09004 * 109.47136 * 299.99184 * 9 7 2 27 27 H 1.09000 * 109.47672 * 59.99479 * 10 9 7 28 28 H 1.09009 * 109.46790 * 299.99550 * 10 9 7 29 29 H 1.08996 * 109.47273 * 59.99750 * 11 10 9 30 30 H 1.09000 * 109.46792 * 299.99797 * 11 10 9 31 31 H 1.08996 * 110.37347 * 85.25046 * 16 15 12 32 32 H 1.09005 * 110.46079 * 322.97633 * 16 15 12 33 33 H 1.09004 * 111.00798 * 81.06101 * 17 16 15 34 34 H 1.08994 * 111.01051 * 204.87789 * 17 16 15 35 35 H 1.08997 * 110.72195 * 153.88130 * 18 17 16 36 36 H 1.08995 * 110.72271 * 277.15476 * 18 17 16 37 37 H 1.08991 * 109.46971 * 296.52476 * 21 19 15 38 38 H 1.09006 * 109.47042 * 56.52425 * 21 19 15 39 39 H 1.08998 * 109.47297 * 305.09146 * 22 21 19 40 40 H 1.09001 * 109.46639 * 65.09009 * 22 21 19 41 41 H 0.96701 * 114.00195 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 16 2.6590 -6.3660 0.0032 13 8 3.3557 -6.4257 1.2403 14 8 3.3558 -6.4270 -1.2337 15 7 1.7086 -7.7221 0.0046 16 6 1.1096 -8.3527 -1.1857 17 6 -0.1163 -9.1317 -0.6473 18 6 0.4174 -9.6523 0.7134 19 6 1.3232 -8.4972 1.1930 20 1 0.7758 -7.8613 1.8888 21 6 2.5718 -9.0629 1.8727 22 6 2.1677 -9.7938 3.1546 23 8 3.3411 -10.2194 3.8502 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8713 -3.6040 0.8922 28 1 2.8726 -3.6048 -0.8878 29 1 0.8539 -5.0455 -0.8877 30 1 0.8532 -5.0442 0.8923 31 1 1.8195 -9.0368 -1.6505 32 1 0.7924 -7.5932 -1.9004 33 1 -0.9691 -8.4680 -0.5044 34 1 -0.3744 -9.9592 -1.3080 35 1 -0.4028 -9.8158 1.4124 36 1 0.9967 -10.5654 0.5767 37 1 3.0684 -9.7600 1.1980 38 1 3.2526 -8.2477 2.1185 39 1 1.5922 -9.1211 3.7905 40 1 1.5602 -10.6627 2.9013 41 1 3.1602 -10.6915 4.6746 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494323417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:08:49 Heat of formation + Delta-G solvation = -168.472482 kcal Electronic energy + Delta-G solvation = -21922.340614 eV Core-core repulsion = 18541.489995 eV Total energy + Delta-G solvation = -3380.850619 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.95338 -38.28783 -37.63702 -37.10216 -36.50622 -34.19647 -33.12170 -31.89640 -29.68633 -28.03381 -25.68613 -24.16455 -22.86654 -22.26113 -21.67412 -19.91533 -18.84518 -18.61645 -18.05209 -17.53666 -17.16055 -16.55405 -16.42489 -16.09523 -15.79519 -15.02855 -14.85557 -14.51351 -14.31983 -14.22039 -14.04815 -13.58260 -13.53010 -13.37047 -13.20651 -13.03171 -12.91895 -12.79258 -12.63219 -12.51280 -12.19464 -12.04041 -11.96061 -11.80201 -11.57931 -11.51932 -11.39441 -11.11670 -10.78681 -10.60102 -9.97501 -8.24885 -6.36056 -0.84205 1.38551 1.39148 1.52652 1.63310 2.38393 2.75269 3.01871 3.08607 3.30315 3.58267 3.72881 3.74775 3.91087 4.07583 4.23127 4.28885 4.34255 4.40697 4.45710 4.57421 4.60095 4.63971 4.79373 4.88584 4.96935 4.99537 5.03772 5.06394 5.16504 5.27156 5.36168 5.42142 5.46701 5.51136 5.59103 5.76582 6.17122 6.79213 6.97003 7.33403 8.86865 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023167 B = 0.003522 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.310742 B = 7948.035896 C = 8340.154355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.553 4.553 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.107 4.107 11 C -0.606 4.606 12 S 2.632 3.368 13 O -0.979 6.979 14 O -0.989 6.989 15 N -1.009 6.009 16 C 0.104 3.896 17 C -0.123 4.123 18 C -0.118 4.118 19 C 0.148 3.852 20 H 0.087 0.913 21 C -0.161 4.161 22 C 0.083 3.917 23 O -0.601 6.601 24 H 0.266 0.734 25 H 0.004 0.996 26 H 0.004 0.996 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 -24.162 2.879 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.591 4.591 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.146 4.146 11 C -0.737 4.737 12 S 2.731 3.269 13 O -0.970 6.970 14 O -0.979 6.979 15 N -0.848 5.848 16 C -0.020 4.020 17 C -0.162 4.162 18 C -0.157 4.157 19 C 0.043 3.957 20 H 0.105 0.895 21 C -0.201 4.201 22 C 0.005 3.995 23 O -0.410 6.410 24 H 0.074 0.926 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.261 -23.704 2.354 23.927 hybrid contribution -0.396 1.248 0.398 1.368 sum -2.657 -22.456 2.752 22.780 Atomic orbital electron populations 1.70071 1.07604 1.27894 1.51316 1.25935 0.95840 1.03230 0.94485 0.85416 0.79012 0.78756 0.77999 1.18893 1.20092 1.20097 1.21758 0.93707 0.92525 1.51157 0.92282 1.18957 0.93951 0.91737 0.95974 1.21323 0.98743 0.92577 1.01940 1.30526 1.16638 1.13607 1.12917 1.04198 0.75194 0.74636 0.72903 1.93501 1.71357 1.86107 1.45999 1.93520 1.71148 1.86455 1.46816 1.58540 1.69780 1.41255 1.15227 1.22301 0.95672 0.97552 0.86472 1.22821 0.96189 1.00482 0.96701 1.22815 0.98864 0.96235 0.97798 1.21480 0.94405 0.93827 0.86007 0.89543 1.22316 0.99214 1.01257 0.97265 1.22122 0.86822 0.98324 0.92249 1.86460 1.33984 1.78921 1.41661 0.92562 0.97783 0.97793 0.91645 0.91746 0.83847 0.83750 0.91221 0.90155 0.89672 0.87739 0.87519 0.89695 0.91803 0.91279 0.92564 0.90654 0.75221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.55 -31.94 9.11 25.60 0.23 -31.70 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.68 4.97 29.85 0.15 1.83 16 10 C -0.11 -4.48 5.16 30.59 0.16 -4.33 16 11 C -0.61 -19.08 6.18 71.98 0.44 -18.63 16 12 S 2.63 82.02 5.61 -56.49 -0.32 81.70 16 13 O -0.98 -35.76 14.98 -127.65 -1.91 -37.67 16 14 O -0.99 -36.76 17.70 -127.65 -2.26 -39.02 16 15 N -1.01 -22.93 3.32 -484.10 -1.61 -24.54 16 16 C 0.10 1.80 6.97 86.86 0.61 2.41 16 17 C -0.12 -1.26 7.08 31.98 0.23 -1.04 16 18 C -0.12 -1.23 5.63 31.82 0.18 -1.05 16 19 C 0.15 2.72 3.05 45.38 0.14 2.86 16 20 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 21 C -0.16 -3.66 5.02 30.59 0.15 -3.51 16 22 C 0.08 1.37 6.80 71.98 0.49 1.85 16 23 O -0.60 -11.93 13.66 -148.98 -2.03 -13.97 16 24 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 25 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 27 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 29 H 0.14 3.97 8.14 -2.39 -0.02 3.95 16 30 H 0.14 4.01 8.14 -2.39 -0.02 3.99 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.08 0.80 7.79 -2.39 -0.02 0.78 16 37 H 0.06 1.48 8.06 -2.39 -0.02 1.46 16 38 H 0.07 2.14 5.51 -2.38 -0.01 2.13 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 0.77 7.59 -2.39 -0.02 0.75 16 41 H 0.40 3.60 9.12 -74.06 -0.68 2.92 16 Total: -1.00 -79.46 344.82 -2.25 -81.71 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.33 Total: 11.43 kcal Atomic # 6 Polarization: -53.88 SS G_CDS: 3.24 Total: -50.64 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -1.32 Total: -80.10 kcal Atomic # 8 Polarization: -84.44 SS G_CDS: -6.21 Total: -90.65 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 82.02 SS G_CDS: -0.32 Total: 81.70 kcal Total: -79.46 -2.25 -81.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494323417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.763 kcal (2) G-P(sol) polarization free energy of solvation -79.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds