Wall clock time and date at job start Fri Apr 10 2020 14:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00337 * 2 1 4 4 H 1.48498 * 109.47194 * 270.00360 * 3 2 1 5 5 H 1.48496 * 109.46944 * 30.00362 * 3 2 1 6 6 H 1.48507 * 109.46989 * 150.00023 * 3 2 1 7 7 C 1.37882 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99971 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99745 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47181 * 180.02562 * 9 7 2 11 11 S 1.81396 * 109.47266 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54143 * 68.38060 * 11 10 9 13 13 O 1.42095 * 110.54535 * 291.62590 * 11 10 9 14 14 N 1.65608 * 104.44890 * 179.97438 * 11 10 9 15 15 C 1.47426 * 125.64560 * 90.02539 * 14 11 10 16 16 C 1.54910 * 104.83073 * 204.09186 * 15 14 11 17 17 C 1.55150 * 101.58106 * 322.99371 * 16 15 14 18 18 H 1.09008 * 110.72025 * 276.95861 * 17 16 15 19 19 C 1.53004 * 110.72249 * 153.86821 * 17 16 15 20 20 C 1.53001 * 109.47048 * 66.44786 * 19 17 16 21 21 C 1.53004 * 109.46666 * 180.02562 * 20 19 17 22 22 O 1.42903 * 109.46717 * 180.02562 * 21 20 19 23 23 C 1.47019 * 125.64893 * 269.71855 * 14 11 10 24 24 H 0.97001 * 119.99795 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47156 * 60.00126 * 9 7 2 26 26 H 1.09000 * 109.47119 * 300.00130 * 9 7 2 27 27 H 1.09010 * 109.46722 * 59.99783 * 10 9 7 28 28 H 1.09004 * 109.47036 * 300.00537 * 10 9 7 29 29 H 1.09002 * 110.36613 * 322.93094 * 15 14 11 30 30 H 1.09001 * 110.36638 * 85.14291 * 15 14 11 31 31 H 1.08997 * 111.00440 * 81.06524 * 16 15 14 32 32 H 1.08998 * 111.00448 * 204.91694 * 16 15 14 33 33 H 1.08998 * 109.47386 * 186.45655 * 19 17 16 34 34 H 1.09007 * 109.46343 * 306.45059 * 19 17 16 35 35 H 1.09001 * 109.47156 * 300.00190 * 20 19 17 36 36 H 1.08994 * 109.47042 * 60.00794 * 20 19 17 37 37 H 1.09001 * 109.47171 * 299.99792 * 21 20 19 38 38 H 1.09003 * 109.47223 * 60.00530 * 21 20 19 39 39 H 0.96700 * 113.99977 * 179.97438 * 22 21 20 40 40 H 1.08995 * 109.88426 * 298.39785 * 23 14 11 41 41 H 1.09007 * 109.88165 * 59.55797 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 16 5.8354 -2.6367 -0.0038 12 8 6.3350 -2.1471 1.2331 13 8 6.3331 -2.1457 -1.2408 14 7 6.2486 -4.2404 -0.0042 15 6 6.4624 -5.0722 -1.2025 16 6 6.2055 -6.5243 -0.7282 17 6 6.8029 -6.4948 0.7034 18 1 7.8817 -6.6486 0.6744 19 6 6.1322 -7.5445 1.5917 20 6 6.4864 -8.9437 1.0841 21 6 5.8152 -9.9934 1.9721 22 8 6.1465 -11.3003 1.4983 23 6 6.4690 -5.0688 1.1902 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6806 0.8888 26 1 3.8744 -0.6801 -0.8911 27 1 3.6576 -3.1499 -0.8926 28 1 3.6583 -3.1511 0.8875 29 1 5.7555 -4.7982 -1.9856 30 1 7.4859 -4.9641 -1.5615 31 1 5.1381 -6.7436 -0.7016 32 1 6.7342 -7.2402 -1.3575 33 1 6.4830 -7.4304 2.6173 34 1 5.0509 -7.4096 1.5604 35 1 6.1355 -9.0578 0.0584 36 1 7.5676 -9.0786 1.1154 37 1 6.1658 -9.8795 2.9979 38 1 4.7340 -9.8584 1.9405 39 1 5.7546 -12.0172 2.0155 40 1 7.3004 -4.6688 1.7705 41 1 5.5651 -5.0891 1.7992 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571658371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:06 Heat of formation + Delta-G solvation = -141.965993 kcal Electronic energy + Delta-G solvation = -21549.800600 eV Core-core repulsion = 18170.099389 eV Total energy + Delta-G solvation = -3379.701211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.07002 -37.35159 -36.72923 -35.57033 -34.30090 -33.94903 -31.48705 -30.42111 -29.37893 -26.00829 -25.45230 -22.56624 -21.90356 -21.07494 -20.43989 -18.69954 -17.75498 -17.64779 -16.87851 -16.38951 -15.93462 -15.58811 -15.15973 -14.67080 -14.31560 -14.13101 -13.87865 -13.56221 -13.37936 -13.10327 -12.80750 -12.55696 -12.54747 -11.90827 -11.76540 -11.75154 -11.67905 -11.40389 -11.30237 -11.25409 -11.20057 -10.99458 -10.88096 -10.73749 -10.45023 -10.32762 -10.16444 -9.74508 -9.43323 -8.81598 -8.67324 -6.17646 -4.18902 0.61353 2.93870 3.25984 3.33279 3.37616 3.75353 4.18680 4.22916 4.35039 4.36837 4.51034 4.65512 4.72076 4.87837 4.98376 5.13632 5.14672 5.19603 5.24191 5.32321 5.43318 5.46838 5.51745 5.53106 5.55444 5.68940 5.73435 5.78642 5.91406 5.96883 6.08534 6.15886 6.28336 6.43277 6.80945 6.93289 7.23581 7.53827 8.35625 8.83376 9.42065 10.94774 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.003451 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.010302 B = 8112.018895 C = 8833.130366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.870 3.130 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.582 4.582 11 S 2.604 3.396 12 O -0.962 6.962 13 O -0.962 6.962 14 N -1.018 6.018 15 C 0.121 3.879 16 C -0.128 4.128 17 C -0.096 4.096 18 H 0.085 0.915 19 C -0.110 4.110 20 C -0.119 4.119 21 C 0.073 3.927 22 O -0.578 6.578 23 C 0.124 3.876 24 H 0.266 0.734 25 H 0.032 0.968 26 H 0.028 0.972 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.379 0.621 40 H 0.070 0.930 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.022 -19.317 2.675 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.696 3.304 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.558 4.558 8 H 0.096 0.904 9 C -0.047 4.047 10 C -0.715 4.715 11 S 2.703 3.297 12 O -0.953 6.953 13 O -0.952 6.952 14 N -0.855 5.855 15 C -0.004 4.004 16 C -0.167 4.167 17 C -0.115 4.115 18 H 0.103 0.897 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.005 4.005 22 O -0.383 6.383 23 C -0.001 4.001 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.226 0.774 40 H 0.089 0.911 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.832 -18.032 2.235 22.835 hybrid contribution -0.682 0.233 0.455 0.853 sum 13.149 -17.798 2.689 22.292 Atomic orbital electron populations 1.69878 1.06217 1.27271 1.50008 1.24987 0.94826 0.99181 0.94117 0.86920 0.80708 0.83655 0.79151 1.19647 1.20731 1.18606 1.20849 0.87810 0.94902 1.52280 0.90436 1.19413 0.99907 0.87505 0.97829 1.30337 1.21379 1.08983 1.10801 1.05311 0.79003 0.71312 0.74058 1.93538 1.78886 1.77450 1.45401 1.93544 1.78950 1.77331 1.45397 1.58829 1.85510 1.28624 1.12556 1.21939 1.01489 0.89752 0.87213 1.22910 1.01933 0.96062 0.95781 1.22229 1.00706 0.93406 0.95208 0.89681 1.21517 1.01140 0.92816 0.99290 1.21519 1.01337 0.92713 1.00116 1.22242 0.98474 0.82801 0.96947 1.86472 1.76705 1.15876 1.59259 1.21719 1.01326 0.89920 0.87158 0.92366 0.94944 0.95402 0.85740 0.85724 0.90568 0.91454 0.90268 0.90056 0.91275 0.91072 0.90914 0.91245 0.93694 0.93536 0.77425 0.91133 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 10 C -0.58 -10.80 6.12 37.16 0.23 -10.57 16 11 S 2.60 45.61 5.65 -107.50 -0.61 45.00 16 12 O -0.96 -19.30 17.60 -57.54 -1.01 -20.31 16 13 O -0.96 -19.26 17.61 -57.54 -1.01 -20.27 16 14 N -1.02 -13.56 3.62 -111.41 -0.40 -13.96 16 15 C 0.12 1.32 6.89 -2.53 -0.02 1.31 16 16 C -0.13 -1.05 5.69 -24.59 -0.14 -1.19 16 17 C -0.10 -0.78 2.97 -88.78 -0.26 -1.04 16 18 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 19 C -0.11 -0.75 4.58 -26.73 -0.12 -0.87 16 20 C -0.12 -0.83 5.43 -26.73 -0.15 -0.97 16 21 C 0.07 0.49 7.05 37.16 0.26 0.75 16 22 O -0.58 -4.45 13.66 -35.23 -0.48 -4.93 16 23 C 0.12 1.36 6.50 -3.06 -0.02 1.34 16 24 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 25 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16 26 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 27 H 0.12 2.11 8.14 -51.92 -0.42 1.68 16 28 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.64 8.02 -51.93 -0.42 0.22 16 32 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.49 8.10 -51.92 -0.42 0.07 16 35 H 0.07 0.54 7.49 -51.93 -0.39 0.15 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.38 1.23 9.12 45.56 0.42 1.64 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.68 7.82 -51.93 -0.41 0.27 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -35.94 345.88 -9.18 -45.12 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -6.22 Total: -1.94 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -0.76 Total: -24.47 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.37 Total: -40.31 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -2.51 Total: -45.51 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: 45.61 SS G_CDS: -0.61 Total: 45.00 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.94 -9.18 -45.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571658371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.847 kcal (2) G-P(sol) polarization free energy of solvation -35.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds