Wall clock time and date at job start Fri Apr 10 2020 14:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00337 * 2 1 4 4 H 1.48498 * 109.47194 * 270.00360 * 3 2 1 5 5 H 1.48496 * 109.46944 * 30.00362 * 3 2 1 6 6 H 1.48507 * 109.46989 * 150.00023 * 3 2 1 7 7 C 1.37882 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99971 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99745 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47181 * 180.02562 * 9 7 2 11 11 S 1.81396 * 109.47266 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54143 * 68.38060 * 11 10 9 13 13 O 1.42095 * 110.54535 * 291.62590 * 11 10 9 14 14 N 1.65608 * 104.44890 * 179.97438 * 11 10 9 15 15 C 1.47426 * 125.64560 * 90.02539 * 14 11 10 16 16 C 1.54910 * 104.83073 * 204.09186 * 15 14 11 17 17 C 1.55150 * 101.58106 * 322.99371 * 16 15 14 18 18 H 1.09008 * 110.72025 * 276.95861 * 17 16 15 19 19 C 1.53004 * 110.72249 * 153.86821 * 17 16 15 20 20 C 1.53001 * 109.47048 * 66.44786 * 19 17 16 21 21 C 1.53004 * 109.46666 * 180.02562 * 20 19 17 22 22 O 1.42903 * 109.46717 * 180.02562 * 21 20 19 23 23 C 1.47019 * 125.64893 * 269.71855 * 14 11 10 24 24 H 0.97001 * 119.99795 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47156 * 60.00126 * 9 7 2 26 26 H 1.09000 * 109.47119 * 300.00130 * 9 7 2 27 27 H 1.09010 * 109.46722 * 59.99783 * 10 9 7 28 28 H 1.09004 * 109.47036 * 300.00537 * 10 9 7 29 29 H 1.09002 * 110.36613 * 322.93094 * 15 14 11 30 30 H 1.09001 * 110.36638 * 85.14291 * 15 14 11 31 31 H 1.08997 * 111.00440 * 81.06524 * 16 15 14 32 32 H 1.08998 * 111.00448 * 204.91694 * 16 15 14 33 33 H 1.08998 * 109.47386 * 186.45655 * 19 17 16 34 34 H 1.09007 * 109.46343 * 306.45059 * 19 17 16 35 35 H 1.09001 * 109.47156 * 300.00190 * 20 19 17 36 36 H 1.08994 * 109.47042 * 60.00794 * 20 19 17 37 37 H 1.09001 * 109.47171 * 299.99792 * 21 20 19 38 38 H 1.09003 * 109.47223 * 60.00530 * 21 20 19 39 39 H 0.96700 * 113.99977 * 179.97438 * 22 21 20 40 40 H 1.08995 * 109.88426 * 298.39785 * 23 14 11 41 41 H 1.09007 * 109.88165 * 59.55797 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 16 5.8354 -2.6367 -0.0038 12 8 6.3350 -2.1471 1.2331 13 8 6.3331 -2.1457 -1.2408 14 7 6.2486 -4.2404 -0.0042 15 6 6.4624 -5.0722 -1.2025 16 6 6.2055 -6.5243 -0.7282 17 6 6.8029 -6.4948 0.7034 18 1 7.8817 -6.6486 0.6744 19 6 6.1322 -7.5445 1.5917 20 6 6.4864 -8.9437 1.0841 21 6 5.8152 -9.9934 1.9721 22 8 6.1465 -11.3003 1.4983 23 6 6.4690 -5.0688 1.1902 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6806 0.8888 26 1 3.8744 -0.6801 -0.8911 27 1 3.6576 -3.1499 -0.8926 28 1 3.6583 -3.1511 0.8875 29 1 5.7555 -4.7982 -1.9856 30 1 7.4859 -4.9641 -1.5615 31 1 5.1381 -6.7436 -0.7016 32 1 6.7342 -7.2402 -1.3575 33 1 6.4830 -7.4304 2.6173 34 1 5.0509 -7.4096 1.5604 35 1 6.1355 -9.0578 0.0584 36 1 7.5676 -9.0786 1.1154 37 1 6.1658 -9.8795 2.9979 38 1 4.7340 -9.8584 1.9405 39 1 5.7546 -12.0172 2.0155 40 1 7.3004 -4.6688 1.7705 41 1 5.5651 -5.0891 1.7992 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571658371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:06 Heat of formation + Delta-G solvation = -170.353890 kcal Electronic energy + Delta-G solvation = -21551.031592 eV Core-core repulsion = 18170.099389 eV Total energy + Delta-G solvation = -3380.932203 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.84191 -38.22996 -37.89248 -37.07625 -35.91661 -34.97720 -33.49335 -31.18619 -30.14112 -27.91081 -26.14268 -23.59013 -22.90854 -22.39669 -21.09012 -19.99358 -19.38122 -18.51411 -18.18805 -17.41547 -17.08214 -16.63249 -16.42862 -16.18591 -15.39369 -15.29956 -14.86430 -14.79846 -14.62277 -14.18140 -13.88059 -13.82382 -13.31811 -13.28309 -13.21479 -13.17852 -13.09180 -12.97986 -12.58386 -12.26240 -12.15977 -11.97503 -11.94503 -11.74495 -11.68813 -11.47714 -11.34948 -11.30018 -10.86189 -10.80660 -9.91016 -8.38375 -6.44316 -0.79073 1.30957 1.32667 1.42964 1.69598 2.28174 2.78273 2.95469 3.02553 3.33761 3.58141 3.76294 3.90161 3.96367 4.06975 4.16595 4.32363 4.38555 4.46729 4.53770 4.56971 4.60639 4.67097 4.82196 4.86936 4.91493 5.00717 5.03377 5.05961 5.09438 5.11823 5.18473 5.32902 5.41646 5.45427 5.46727 5.56612 6.14858 6.61518 6.93047 7.20176 8.77224 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.003451 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.010302 B = 8112.018895 C = 8833.130366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.014 3.986 3 Si 0.925 3.075 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.250 1.250 7 C -0.528 4.528 8 H 0.049 0.951 9 C -0.017 4.017 10 C -0.586 4.586 11 S 2.633 3.367 12 O -0.988 6.988 13 O -0.987 6.987 14 N -1.014 6.014 15 C 0.108 3.892 16 C -0.120 4.120 17 C -0.087 4.087 18 H 0.095 0.905 19 C -0.104 4.104 20 C -0.117 4.117 21 C 0.070 3.930 22 O -0.600 6.600 23 C 0.111 3.889 24 H 0.270 0.730 25 H 0.032 0.968 26 H 0.030 0.970 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.396 0.604 40 H 0.067 0.933 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.544 -20.346 2.826 25.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.185 4.185 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.174 1.174 7 C -0.567 4.567 8 H 0.067 0.933 9 C -0.056 4.056 10 C -0.718 4.718 11 S 2.731 3.269 12 O -0.979 6.979 13 O -0.978 6.978 14 N -0.854 5.854 15 C -0.017 4.017 16 C -0.159 4.159 17 C -0.107 4.107 18 H 0.113 0.887 19 C -0.142 4.142 20 C -0.154 4.154 21 C -0.008 4.008 22 O -0.408 6.408 23 C -0.013 4.013 24 H 0.079 0.921 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.156 0.844 28 H 0.156 0.844 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.245 0.755 40 H 0.086 0.914 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.341 -19.069 2.392 24.591 hybrid contribution -1.161 0.396 0.413 1.295 sum 14.180 -18.673 2.805 23.614 Atomic orbital electron populations 1.70003 1.07878 1.28442 1.51588 1.25873 0.95648 1.03022 0.93918 0.86021 0.79910 0.79378 0.79920 1.18491 1.19778 1.17362 1.21167 0.90191 0.93898 1.51463 0.93254 1.19373 0.97275 0.91133 0.97813 1.30327 1.23259 1.05938 1.12251 1.04152 0.77837 0.72115 0.72796 1.93498 1.78966 1.78937 1.46472 1.93505 1.79021 1.78807 1.46440 1.58476 1.84646 1.27683 1.14588 1.22265 1.02013 0.90964 0.86420 1.22921 1.02531 0.94510 0.95963 1.22213 1.01487 0.91793 0.95216 0.88687 1.21463 1.01025 0.92260 0.99431 1.21477 1.01177 0.92801 0.99975 1.22299 0.98772 0.82420 0.97297 1.86419 1.77277 1.16845 1.60285 1.22032 1.01735 0.91153 0.86428 0.92059 0.94976 0.95126 0.84403 0.84399 0.90418 0.90848 0.89941 0.87973 0.90448 0.91037 0.91355 0.91505 0.92754 0.93066 0.75458 0.91419 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.87 13.96 21.45 0.30 -57.57 16 2 C 0.01 0.82 5.47 84.66 0.46 1.28 16 3 Si 0.93 44.04 27.47 68.60 1.88 45.92 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 7 C -0.53 -30.04 9.66 25.60 0.25 -29.79 16 8 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 9 C -0.02 -0.80 4.05 29.85 0.12 -0.68 16 10 C -0.59 -21.32 6.12 71.98 0.44 -20.88 16 11 S 2.63 89.40 5.65 -56.49 -0.32 89.08 16 12 O -0.99 -38.70 17.60 -127.65 -2.25 -40.95 16 13 O -0.99 -38.57 17.61 -127.65 -2.25 -40.81 16 14 N -1.01 -25.29 3.62 -506.41 -1.83 -27.12 16 15 C 0.11 2.12 6.89 86.86 0.60 2.72 16 16 C -0.12 -1.64 5.69 31.98 0.18 -1.46 16 17 C -0.09 -1.19 2.97 -9.60 -0.03 -1.21 16 18 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 19 C -0.10 -1.15 4.58 30.60 0.14 -1.01 16 20 C -0.12 -1.35 5.43 30.60 0.17 -1.18 16 21 C 0.07 0.78 7.05 71.98 0.51 1.29 16 22 O -0.60 -8.20 13.66 -148.98 -2.04 -10.23 16 23 C 0.11 2.21 6.50 86.73 0.56 2.78 16 24 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 25 H 0.03 1.51 7.20 -2.39 -0.02 1.49 16 26 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 27 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 28 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.10 8.02 -2.39 -0.02 1.08 16 32 H 0.10 1.02 8.13 -2.39 -0.02 1.00 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.81 8.10 -2.38 -0.02 0.79 16 35 H 0.07 0.85 7.49 -2.39 -0.02 0.83 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.40 1.93 9.12 -74.06 -0.68 1.25 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.36 7.82 -2.38 -0.02 1.34 16 Total: -1.00 -76.84 345.88 -2.83 -79.67 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.27 Total: 10.17 kcal Atomic # 6 Polarization: -51.55 SS G_CDS: 3.40 Total: -48.15 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -1.53 Total: -84.69 kcal Atomic # 8 Polarization: -85.47 SS G_CDS: -6.53 Total: -91.99 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Atomic # 16 Polarization: 89.40 SS G_CDS: -0.32 Total: 89.08 kcal Total: -76.84 -2.83 -79.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571658371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.688 kcal (2) G-P(sol) polarization free energy of solvation -76.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds