Wall clock time and date at job start Fri Apr 10 2020 14:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47360 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54259 * 291.62586 * 11 10 9 13 13 O 1.42106 * 110.54167 * 68.37612 * 11 10 9 14 14 N 1.65606 * 104.45103 * 179.97438 * 11 10 9 15 15 C 1.46931 * 120.62946 * 269.71950 * 14 11 10 16 16 C 1.52760 * 109.00482 * 233.58122 * 15 14 11 17 17 C 1.53038 * 109.38712 * 305.58973 * 16 15 14 18 18 C 1.53045 * 109.53667 * 61.24260 * 17 16 15 19 19 H 1.09001 * 109.49708 * 58.58671 * 18 17 16 20 20 C 1.53001 * 109.52404 * 178.66783 * 18 17 16 21 21 C 1.52998 * 109.46960 * 294.85343 * 20 18 17 22 22 O 1.42894 * 109.47465 * 179.97438 * 21 20 18 23 23 C 1.46923 * 120.62889 * 90.00030 * 14 11 10 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.08996 * 109.58620 * 353.42291 * 15 14 11 30 30 H 1.09000 * 109.58287 * 113.84270 * 15 14 11 31 31 H 1.09000 * 109.55779 * 185.55242 * 16 15 14 32 32 H 1.09003 * 109.35959 * 65.50545 * 16 15 14 33 33 H 1.08996 * 109.46242 * 301.22263 * 17 16 15 34 34 H 1.09000 * 109.44716 * 181.25582 * 17 16 15 35 35 H 1.09001 * 109.46803 * 54.85249 * 20 18 17 36 36 H 1.08994 * 109.47020 * 174.85380 * 20 18 17 37 37 H 1.09003 * 109.47257 * 300.00389 * 21 20 18 38 38 H 1.09005 * 109.47040 * 59.99666 * 21 20 18 39 39 H 0.96694 * 114.00804 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.58730 * 246.15802 * 23 14 11 41 41 H 1.08997 * 109.58860 * 6.43962 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3381 -5.2330 0.0013 12 8 0.6645 -5.4193 1.2385 13 8 0.6637 -5.4200 -1.2355 14 7 2.5202 -6.3928 0.0005 15 6 3.0494 -6.9216 -1.2641 16 6 2.9431 -8.4454 -1.2494 17 6 3.6380 -8.9911 0.0001 18 6 2.9452 -8.4448 1.2507 19 1 1.8942 -8.7337 1.2399 20 6 3.6191 -9.0167 2.4996 21 6 3.4009 -10.5302 2.5491 22 8 4.0308 -11.0645 3.7151 23 6 3.0555 -6.9169 1.2644 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 2.4698 -6.5241 -2.0973 30 1 4.0946 -6.6319 -1.3724 31 1 3.4222 -8.8532 -2.1396 32 1 1.8921 -8.7342 -1.2367 33 1 4.6829 -8.6810 -0.0008 34 1 3.5822 -10.0796 0.0003 35 1 4.6878 -8.8046 2.4651 36 1 3.1861 -8.5579 3.3884 37 1 2.3323 -10.7423 2.5834 38 1 3.8339 -10.9890 1.6601 39 1 3.9326 -12.0216 3.8117 40 1 4.1013 -6.6269 1.3666 41 1 2.4816 -6.5146 2.0991 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611022765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:08:45 Heat of formation + Delta-G solvation = -147.488159 kcal Electronic energy + Delta-G solvation = -21979.377257 eV Core-core repulsion = 18599.436587 eV Total energy + Delta-G solvation = -3379.940670 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.11183 -37.08903 -36.66300 -35.43135 -33.89155 -33.81764 -31.93216 -31.15075 -28.64237 -25.62197 -24.88256 -23.51642 -21.91810 -21.39055 -20.20400 -18.40053 -17.75884 -17.44137 -16.52232 -15.97195 -15.67406 -15.42553 -14.92216 -14.61652 -14.53944 -14.12175 -14.00254 -13.61077 -13.49708 -13.33510 -12.51235 -12.35471 -12.13588 -11.80777 -11.75533 -11.60694 -11.55989 -11.44589 -11.16776 -11.08069 -10.96009 -10.92588 -10.60615 -10.50550 -10.40130 -10.37445 -10.14909 -9.75599 -9.31744 -8.74430 -8.50495 -6.12534 -4.18143 0.75562 3.01642 3.26053 3.32264 3.35152 3.88854 4.29378 4.38427 4.44238 4.57652 4.63646 4.76215 4.88167 4.91639 5.10014 5.13057 5.19585 5.22611 5.34741 5.39188 5.47435 5.59208 5.65342 5.66059 5.73842 5.75732 5.79652 5.86612 5.97571 6.01840 6.23970 6.25264 6.49509 6.69362 7.29925 7.31570 7.35996 7.80525 8.17599 8.85304 9.46624 10.98523 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.003489 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.348539 B = 8022.750623 C = 8348.468803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.589 4.589 11 S 2.590 3.410 12 O -0.964 6.964 13 O -0.965 6.965 14 N -1.006 6.006 15 C 0.117 3.883 16 C -0.132 4.132 17 C -0.114 4.114 18 C -0.098 4.098 19 H 0.078 0.922 20 C -0.115 4.115 21 C 0.075 3.925 22 O -0.577 6.577 23 C 0.124 3.876 24 H 0.265 0.735 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.047 0.953 39 H 0.378 0.622 40 H 0.067 0.933 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.197 -20.825 0.936 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.722 4.722 11 S 2.689 3.311 12 O -0.955 6.955 13 O -0.955 6.955 14 N -0.842 5.842 15 C -0.009 4.009 16 C -0.171 4.171 17 C -0.152 4.152 18 C -0.118 4.118 19 H 0.097 0.903 20 C -0.153 4.153 21 C -0.003 4.003 22 O -0.382 6.382 23 C -0.002 4.002 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.225 0.775 40 H 0.086 0.914 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.253 -20.272 1.014 21.911 hybrid contribution 0.878 0.636 -0.146 1.094 sum 9.131 -19.636 0.868 21.672 Atomic orbital electron populations 1.69955 1.06124 1.27203 1.49582 1.25073 0.94979 0.99556 0.94900 0.86462 0.79719 0.82832 0.78231 1.20466 1.20990 1.19748 1.21009 0.93067 0.89779 1.52133 0.92047 1.18966 0.92714 0.90620 0.98831 1.30491 1.13640 1.18069 1.10012 1.05702 0.74874 0.76457 0.74078 1.93525 1.71341 1.85240 1.45347 1.93524 1.71318 1.85247 1.45403 1.57941 1.59393 1.55775 1.11129 1.21320 0.99551 0.94318 0.85676 1.21789 1.01629 0.95649 0.98024 1.21617 0.99637 0.99894 0.94023 1.21423 1.00704 0.95515 0.94141 0.90343 1.21498 1.01883 0.93672 0.98278 1.22258 0.96115 0.94810 0.87110 1.86476 1.78995 1.26976 1.45753 1.21396 0.99714 0.93252 0.85815 0.92521 0.94866 0.94896 0.86290 0.86290 0.88730 0.91640 0.90858 0.91404 0.91594 0.91855 0.90926 0.90670 0.93639 0.93460 0.77550 0.91433 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.59 -11.38 6.12 37.16 0.23 -11.15 16 11 S 2.59 46.96 5.45 -107.50 -0.59 46.37 16 12 O -0.96 -19.98 16.59 -57.54 -0.95 -20.94 16 13 O -0.96 -19.93 16.58 -57.54 -0.95 -20.89 16 14 N -1.01 -13.63 3.23 -113.77 -0.37 -14.00 16 15 C 0.12 1.32 6.40 -3.93 -0.03 1.30 16 16 C -0.13 -1.24 6.06 -26.83 -0.16 -1.41 16 17 C -0.11 -0.96 4.96 -26.69 -0.13 -1.09 16 18 C -0.10 -0.96 2.34 -90.50 -0.21 -1.18 16 19 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 20 C -0.12 -1.04 5.06 -26.73 -0.14 -1.18 16 21 C 0.07 0.60 6.81 37.16 0.25 0.85 16 22 O -0.58 -5.04 13.66 -35.23 -0.48 -5.52 16 23 C 0.12 1.44 5.72 -3.71 -0.02 1.42 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 28 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 29 H 0.09 1.16 6.85 -51.93 -0.36 0.80 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.45 6.51 -51.93 -0.34 0.11 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.05 0.32 6.55 -51.93 -0.34 -0.02 16 39 H 0.38 1.54 9.12 45.56 0.42 1.96 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 1.21 6.86 -51.93 -0.36 0.85 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -35.45 340.45 -9.27 -44.72 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.01 Total: -0.13 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -0.76 Total: -25.12 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.37 Total: -39.88 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -2.39 Total: -47.35 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 46.96 SS G_CDS: -0.59 Total: 46.37 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.45 -9.27 -44.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611022765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.770 kcal (2) G-P(sol) polarization free energy of solvation -35.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds