Wall clock time and date at job start Fri Apr 10 2020 14:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47360 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54259 * 291.62586 * 11 10 9 13 13 O 1.42106 * 110.54167 * 68.37612 * 11 10 9 14 14 N 1.65606 * 104.45103 * 179.97438 * 11 10 9 15 15 C 1.46931 * 120.62946 * 269.71950 * 14 11 10 16 16 C 1.52760 * 109.00482 * 233.58122 * 15 14 11 17 17 C 1.53038 * 109.38712 * 305.58973 * 16 15 14 18 18 C 1.53045 * 109.53667 * 61.24260 * 17 16 15 19 19 H 1.09001 * 109.49708 * 58.58671 * 18 17 16 20 20 C 1.53001 * 109.52404 * 178.66783 * 18 17 16 21 21 C 1.52998 * 109.46960 * 294.85343 * 20 18 17 22 22 O 1.42894 * 109.47465 * 179.97438 * 21 20 18 23 23 C 1.46923 * 120.62889 * 90.00030 * 14 11 10 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.08996 * 109.58620 * 353.42291 * 15 14 11 30 30 H 1.09000 * 109.58287 * 113.84270 * 15 14 11 31 31 H 1.09000 * 109.55779 * 185.55242 * 16 15 14 32 32 H 1.09003 * 109.35959 * 65.50545 * 16 15 14 33 33 H 1.08996 * 109.46242 * 301.22263 * 17 16 15 34 34 H 1.09000 * 109.44716 * 181.25582 * 17 16 15 35 35 H 1.09001 * 109.46803 * 54.85249 * 20 18 17 36 36 H 1.08994 * 109.47020 * 174.85380 * 20 18 17 37 37 H 1.09003 * 109.47257 * 300.00389 * 21 20 18 38 38 H 1.09005 * 109.47040 * 59.99666 * 21 20 18 39 39 H 0.96694 * 114.00804 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.58730 * 246.15802 * 23 14 11 41 41 H 1.08997 * 109.58860 * 6.43962 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3381 -5.2330 0.0013 12 8 0.6645 -5.4193 1.2385 13 8 0.6637 -5.4200 -1.2355 14 7 2.5202 -6.3928 0.0005 15 6 3.0494 -6.9216 -1.2641 16 6 2.9431 -8.4454 -1.2494 17 6 3.6380 -8.9911 0.0001 18 6 2.9452 -8.4448 1.2507 19 1 1.8942 -8.7337 1.2399 20 6 3.6191 -9.0167 2.4996 21 6 3.4009 -10.5302 2.5491 22 8 4.0308 -11.0645 3.7151 23 6 3.0555 -6.9169 1.2644 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 2.4698 -6.5241 -2.0973 30 1 4.0946 -6.6319 -1.3724 31 1 3.4222 -8.8532 -2.1396 32 1 1.8921 -8.7342 -1.2367 33 1 4.6829 -8.6810 -0.0008 34 1 3.5822 -10.0796 0.0003 35 1 4.6878 -8.8046 2.4651 36 1 3.1861 -8.5579 3.3884 37 1 2.3323 -10.7423 2.5834 38 1 3.8339 -10.9890 1.6601 39 1 3.9326 -12.0216 3.8117 40 1 4.1013 -6.6269 1.3666 41 1 2.4816 -6.5146 2.0991 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611022765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:08:45 Heat of formation + Delta-G solvation = -175.261549 kcal Electronic energy + Delta-G solvation = -21980.581602 eV Core-core repulsion = 18599.436587 eV Total energy + Delta-G solvation = -3381.145015 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.93602 -38.24869 -37.74516 -37.01529 -35.90850 -34.67387 -33.14012 -32.76736 -29.40053 -27.60772 -25.77473 -24.32128 -23.54218 -22.50099 -21.00789 -19.74515 -19.06037 -18.45985 -18.13965 -17.25274 -17.04415 -16.55168 -16.35033 -15.89886 -15.59438 -15.10490 -14.94342 -14.83631 -14.53282 -14.38415 -14.23238 -13.74105 -13.45296 -13.20844 -12.99328 -12.95191 -12.92716 -12.79927 -12.62281 -12.31909 -12.26572 -12.13928 -11.96536 -11.78100 -11.64253 -11.43083 -11.28289 -11.11257 -10.76592 -10.66257 -9.85918 -8.27444 -6.41989 -0.72352 1.40050 1.42163 1.53383 1.73802 2.37161 2.84385 3.05719 3.13448 3.35826 3.60148 3.87835 3.96844 4.03383 4.08563 4.15213 4.22459 4.35767 4.42192 4.52225 4.61968 4.63097 4.73710 4.76599 4.84829 4.90604 4.95510 5.06491 5.12891 5.24714 5.25003 5.25827 5.28963 5.40861 5.53171 5.66655 5.70543 6.04486 6.71689 6.93330 7.28387 8.84909 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.003489 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.348539 B = 8022.750623 C = 8348.468803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.540 4.540 8 H 0.076 0.924 9 C 0.020 3.980 10 C -0.587 4.587 11 S 2.611 3.389 12 O -0.995 6.995 13 O -0.994 6.994 14 N -0.996 5.996 15 C 0.105 3.895 16 C -0.131 4.131 17 C -0.109 4.109 18 C -0.094 4.094 19 H 0.062 0.938 20 C -0.112 4.112 21 C 0.075 3.925 22 O -0.598 6.598 23 C 0.113 3.887 24 H 0.268 0.732 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.397 0.603 40 H 0.095 0.905 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.179 -21.902 0.605 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.579 4.579 8 H 0.094 0.906 9 C -0.018 4.018 10 C -0.719 4.719 11 S 2.710 3.290 12 O -0.986 6.986 13 O -0.984 6.984 14 N -0.835 5.835 15 C -0.019 4.019 16 C -0.170 4.170 17 C -0.147 4.147 18 C -0.114 4.114 19 H 0.081 0.919 20 C -0.151 4.151 21 C -0.003 4.003 22 O -0.406 6.406 23 C -0.011 4.011 24 H 0.077 0.923 25 H 0.023 0.977 26 H 0.024 0.976 27 H 0.159 0.841 28 H 0.158 0.842 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.246 0.754 40 H 0.113 0.887 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.242 -21.361 0.682 24.148 hybrid contribution -0.043 0.857 -0.031 0.859 sum 11.199 -20.503 0.651 23.371 Atomic orbital electron populations 1.70105 1.08123 1.28379 1.50822 1.26147 0.95881 1.03977 0.94306 0.85286 0.78628 0.77493 0.78691 1.19494 1.20796 1.18109 1.21524 0.93992 0.90789 1.51626 0.90601 1.18820 0.93616 0.93204 0.96210 1.30393 1.12707 1.16675 1.12134 1.04725 0.75137 0.76468 0.72699 1.93478 1.72798 1.85682 1.46614 1.93479 1.72702 1.85674 1.46545 1.57556 1.58727 1.54121 1.13050 1.21671 1.00747 0.95704 0.83816 1.21820 1.01219 0.94091 0.99867 1.21622 0.99944 1.00914 0.92200 1.21370 1.00277 0.94092 0.95683 0.91930 1.21447 1.01956 0.94558 0.97105 1.22258 0.96309 0.94041 0.87671 1.86420 1.79135 1.28935 1.46136 1.21687 1.00718 0.94585 0.84149 0.92349 0.97704 0.97631 0.84066 0.84250 0.90039 0.88656 0.88207 0.93042 0.90035 0.90030 0.90207 0.92137 0.93653 0.91602 0.75359 0.88700 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 2 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 3 Si 0.98 43.52 29.54 68.60 2.03 45.54 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 8 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 9 C 0.02 1.09 4.98 29.85 0.15 1.23 16 10 C -0.59 -22.68 6.12 71.98 0.44 -22.24 16 11 S 2.61 96.29 5.45 -56.49 -0.31 95.99 16 12 O -1.00 -42.71 16.59 -127.65 -2.12 -44.83 16 13 O -0.99 -42.18 16.58 -127.65 -2.12 -44.30 16 14 N -1.00 -25.78 3.23 -513.85 -1.66 -27.44 16 15 C 0.10 2.14 6.40 86.22 0.55 2.69 16 16 C -0.13 -2.11 6.06 30.53 0.19 -1.92 16 17 C -0.11 -1.46 4.96 30.62 0.15 -1.31 16 18 C -0.09 -1.68 2.34 -10.71 -0.03 -1.71 16 19 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 20 C -0.11 -1.82 5.06 30.59 0.15 -1.67 16 21 C 0.07 1.03 6.81 71.98 0.49 1.52 16 22 O -0.60 -9.25 13.66 -148.98 -2.03 -11.29 16 23 C 0.11 2.47 5.72 86.36 0.49 2.96 16 24 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 26 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 28 H 0.14 4.74 8.14 -2.39 -0.02 4.72 16 29 H 0.08 1.90 6.85 -2.39 -0.02 1.88 16 30 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.83 6.51 -2.39 -0.02 0.82 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 38 H 0.07 0.66 6.55 -2.38 -0.02 0.64 16 39 H 0.40 2.42 9.12 -74.06 -0.68 1.75 16 40 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.08 2.00 6.86 -2.39 -0.02 1.98 16 Total: -1.00 -78.52 340.45 -2.30 -80.82 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.34 Total: 13.03 kcal Atomic # 6 Polarization: -53.63 SS G_CDS: 3.29 Total: -50.34 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -1.37 Total: -84.63 kcal Atomic # 8 Polarization: -94.14 SS G_CDS: -6.27 Total: -100.41 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 96.29 SS G_CDS: -0.31 Total: 95.99 kcal Total: -78.52 -2.30 -80.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611022765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.437 kcal (2) G-P(sol) polarization free energy of solvation -78.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds