Wall clock time and date at job start Fri Apr 10 2020 14:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47368 * 2 1 4 4 O 1.42897 * 109.47238 * 240.00003 * 2 1 3 5 5 C 1.35901 * 117.00106 * 84.94963 * 4 2 1 6 6 C 1.38731 * 120.05897 * 174.27611 * 5 4 2 7 7 C 1.38140 * 119.94585 * 179.74510 * 6 5 4 8 8 C 1.38269 * 120.05653 * 0.50609 * 7 6 5 9 9 C 1.38268 * 120.10927 * 359.77161 * 8 7 6 10 10 C 1.38141 * 120.05653 * 359.97254 * 9 8 7 11 11 C 1.50699 * 109.47276 * 119.99842 * 2 1 3 12 12 O 1.21286 * 119.99993 * 114.99977 * 11 2 1 13 13 N 1.34778 * 119.99938 * 295.00182 * 11 2 1 14 14 C 1.47066 * 136.05620 * 180.02562 * 13 11 2 15 15 C 1.53494 * 88.04767 * 207.12518 * 14 13 11 16 16 O 1.42903 * 114.21014 * 87.54918 * 15 14 13 17 17 C 1.50701 * 114.20752 * 220.37269 * 15 14 13 18 18 H 1.08000 * 120.00001 * 359.97438 * 17 15 14 19 19 C 1.37881 * 120.00076 * 179.97438 * 17 15 14 20 20 N 1.31515 * 119.99786 * 179.97438 * 19 17 15 21 21 Si 1.86795 * 120.00106 * 0.02562 * 19 17 15 22 22 H 1.48512 * 109.47131 * 89.99791 * 21 19 17 23 23 H 1.48501 * 109.47335 * 209.99685 * 21 19 17 24 24 H 1.48499 * 109.47034 * 329.99925 * 21 19 17 25 25 C 1.47070 * 136.05912 * 0.04581 * 13 11 2 26 26 H 1.09002 * 109.46823 * 60.00164 * 1 2 3 27 27 H 1.08999 * 109.46983 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47082 * 299.99985 * 1 2 3 29 29 H 1.08001 * 120.02273 * 359.97438 * 6 5 4 30 30 H 1.08005 * 119.97346 * 180.23073 * 7 6 5 31 31 H 1.07998 * 119.94321 * 179.74422 * 8 7 6 32 32 H 1.07999 * 119.97052 * 179.97438 * 9 8 7 33 33 H 1.08001 * 120.02737 * 179.97438 * 10 9 8 34 34 H 1.09006 * 113.46791 * 321.93002 * 14 13 11 35 35 H 1.08994 * 113.47342 * 92.31371 * 14 13 11 36 36 H 0.96704 * 114.00190 * 180.02562 * 16 15 14 37 37 H 0.97003 * 119.99746 * 180.02562 * 20 19 17 38 38 H 1.08996 * 113.46784 * 267.63071 * 25 13 11 39 39 H 1.09000 * 113.46464 * 38.00723 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.1115 0.0623 -2.3044 6 6 2.6777 -0.4941 -3.4421 7 6 2.7786 0.2544 -4.5988 8 6 2.3255 1.5605 -4.6202 9 6 1.7662 2.1193 -3.4859 10 6 1.6581 1.3733 -2.3283 11 6 2.0324 -0.7104 1.2305 12 8 2.6530 -1.7467 1.1215 13 7 1.7919 -0.1941 2.4520 14 6 2.1014 -0.5694 3.8399 15 6 0.8438 0.1972 4.2722 16 8 -0.3543 -0.5814 4.2485 17 6 1.0127 0.9978 5.5377 18 1 1.9603 0.9956 6.0557 19 6 -0.0427 1.7332 6.0343 20 7 0.1046 2.4314 7.1390 21 14 -1.6820 1.7365 5.1388 22 1 -2.5309 0.6330 5.6560 23 1 -2.3666 3.0349 5.3641 24 1 -1.4519 1.5440 3.6844 25 6 1.1043 0.9923 2.9837 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.0358 -1.5129 -3.4246 30 1 3.2159 -0.1796 -5.4859 31 1 2.4091 2.1454 -5.5243 32 1 1.4134 3.1399 -3.5050 33 1 1.2215 1.8104 -1.4424 34 1 2.0402 -1.6422 4.0234 35 1 3.0268 -0.1304 4.2123 36 1 -1.1447 -0.0955 4.5210 37 1 -0.6380 2.9485 7.4885 38 1 1.7640 1.8478 3.1284 39 1 0.1959 1.2483 2.4383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186828773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:08:12 Heat of formation + Delta-G solvation = -32.844100 kcal Electronic energy + Delta-G solvation = -23237.211410 eV Core-core repulsion = 19726.798128 eV Total energy + Delta-G solvation = -3510.413282 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66517 -39.76379 -38.11081 -36.99781 -34.68368 -32.65112 -32.39226 -30.97783 -29.83066 -28.83846 -25.87021 -25.44718 -24.31379 -22.88101 -22.07796 -20.36590 -18.77546 -18.50759 -17.57252 -16.80552 -16.46342 -16.27423 -15.81063 -15.67384 -15.00801 -14.77664 -14.49240 -13.84966 -13.67062 -13.65675 -13.36519 -13.24254 -12.89037 -12.67652 -12.43333 -12.36276 -12.25827 -11.82023 -11.72760 -11.24422 -11.12209 -11.01760 -10.87903 -10.64881 -10.20056 -9.78783 -9.34422 -9.18130 -9.12725 -8.77956 -8.33978 -8.17181 -6.50873 -4.57529 1.15984 1.28360 2.60453 2.86091 2.91841 2.93044 3.07768 3.61264 3.62909 3.93891 4.43547 4.57824 4.67221 4.71827 4.78768 4.88394 4.96718 4.96934 5.19633 5.23527 5.38857 5.47679 5.50941 5.57775 5.83150 5.89687 5.90557 6.06455 6.16093 6.17323 6.23283 6.27819 6.30357 6.35095 6.49516 6.60993 7.08577 7.29778 7.91831 8.14660 8.40048 8.45815 8.53449 9.05953 10.61191 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.026251 B = 0.003892 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.380942 B = 7192.218794 C = 7717.395638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.075 3.925 3 H 0.095 0.905 4 O -0.285 6.285 5 C 0.135 3.865 6 C -0.152 4.152 7 C -0.081 4.081 8 C -0.164 4.164 9 C -0.079 4.079 10 C -0.213 4.213 11 C 0.543 3.457 12 O -0.535 6.535 13 N -0.634 5.634 14 C 0.125 3.875 15 C 0.198 3.802 16 O -0.549 6.549 17 C -0.534 4.534 18 H 0.094 0.906 19 C 0.080 3.920 20 N -0.873 5.873 21 Si 0.860 3.140 22 H -0.265 1.265 23 H -0.283 1.283 24 H -0.259 1.259 25 C 0.054 3.946 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.352 0.648 37 H 0.272 0.728 38 H 0.097 0.903 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.334 1.617 -18.231 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.015 3.985 3 H 0.113 0.887 4 O -0.197 6.197 5 C 0.089 3.911 6 C -0.171 4.171 7 C -0.099 4.099 8 C -0.182 4.182 9 C -0.098 4.098 10 C -0.232 4.232 11 C 0.331 3.669 12 O -0.412 6.412 13 N -0.369 5.369 14 C 0.004 3.996 15 C 0.157 3.843 16 O -0.360 6.360 17 C -0.572 4.572 18 H 0.112 0.888 19 C -0.125 4.125 20 N -0.508 5.508 21 Si 0.689 3.311 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.184 1.184 25 C -0.069 4.069 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.204 0.796 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.074 0.442 -18.512 18.549 hybrid contribution -1.408 0.903 -0.149 1.679 sum -0.334 1.345 -18.661 18.712 Atomic orbital electron populations 1.22371 0.92632 1.04583 1.03837 1.22115 0.95865 0.96748 0.83771 0.88698 1.86208 1.80754 1.37051 1.15731 1.19147 0.94753 0.90359 0.86852 1.20488 1.03728 1.01565 0.91285 1.20963 0.97945 0.94028 0.97012 1.21051 1.02560 0.95903 0.98704 1.20953 0.97147 0.99388 0.92266 1.21376 1.07055 0.94426 1.00340 1.19358 0.79928 0.85339 0.82316 1.90696 1.41238 1.23691 1.85595 1.49538 1.55564 1.27252 1.04586 1.23187 0.98566 1.01270 0.76601 1.20240 0.83143 0.88674 0.92290 1.86487 1.17256 1.41922 1.90364 1.21129 1.01320 1.27666 1.07094 0.88823 1.25013 0.98588 0.94415 0.94525 1.69846 1.32570 1.28655 1.19766 0.87316 0.84791 0.78316 0.80719 1.19165 1.20920 1.18413 1.24672 0.96156 0.90148 0.95908 0.90946 0.90624 0.89712 0.85068 0.85423 0.86021 0.85790 0.85195 0.90749 0.88516 0.79562 0.91753 0.88460 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 9.09 37.16 0.34 -2.09 16 2 C 0.07 1.17 2.48 -27.88 -0.07 1.10 16 3 H 0.10 1.29 6.31 -51.93 -0.33 0.96 16 4 O -0.29 -4.69 9.34 -39.29 -0.37 -5.05 16 5 C 0.13 1.86 6.60 -39.21 -0.26 1.60 16 6 C -0.15 -1.84 9.99 -39.44 -0.39 -2.24 16 7 C -0.08 -0.80 10.04 -39.61 -0.40 -1.19 16 8 C -0.16 -1.53 10.04 -39.56 -0.40 -1.92 16 9 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 10 C -0.21 -2.52 8.24 -39.43 -0.33 -2.84 16 11 C 0.54 10.60 7.43 -10.99 -0.08 10.52 16 12 O -0.54 -12.32 17.28 -14.31 -0.25 -12.57 16 13 N -0.63 -12.24 3.66 -185.00 -0.68 -12.92 16 14 C 0.13 2.52 8.02 -8.51 -0.07 2.45 16 15 C 0.20 4.29 1.10 -91.19 -0.10 4.19 16 16 O -0.55 -12.38 13.32 -35.23 -0.47 -12.85 16 17 C -0.53 -13.19 9.27 -34.44 -0.32 -13.51 16 18 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 19 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 20 N -0.87 -23.63 13.96 55.43 0.77 -22.86 16 21 Si 0.86 18.06 24.42 -169.99 -4.15 13.91 16 22 H -0.27 -5.48 7.06 56.52 0.40 -5.08 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 24 H -0.26 -4.99 5.49 56.52 0.31 -4.68 16 25 C 0.05 1.01 6.96 -8.43 -0.06 0.95 16 26 H 0.07 0.83 6.91 -51.93 -0.36 0.47 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.08 1.18 5.72 -51.93 -0.30 0.88 16 29 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 30 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.13 1.40 5.43 -52.49 -0.29 1.11 16 34 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.10 1.79 8.10 -51.93 -0.42 1.37 16 36 H 0.35 7.56 3.16 45.56 0.14 7.70 16 37 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.10 1.69 8.10 -51.93 -0.42 1.27 16 39 H 0.07 1.16 5.09 -51.93 -0.26 0.89 16 LS Contribution 320.14 15.07 4.82 4.82 Total: -1.00 -30.22 320.14 -7.36 -37.58 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -4.42 Total: 12.18 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.63 Total: -2.25 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.10 Total: -35.77 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -1.08 Total: -30.48 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -4.15 Total: 13.91 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.22 -7.36 -37.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186828773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.736 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds