Wall clock time and date at job start Fri Apr 10 2020 14:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99706 * 2 1 4 4 H 1.09001 * 109.47103 * 30.00588 * 3 2 1 5 5 C 1.52997 * 109.47264 * 270.00308 * 3 2 1 6 6 C 1.53005 * 109.46812 * 150.00007 * 3 2 1 7 7 S 1.81396 * 109.47158 * 300.00081 * 6 3 2 8 8 O 1.42102 * 110.54289 * 291.62651 * 7 6 3 9 9 O 1.42098 * 110.54189 * 68.37842 * 7 6 3 10 10 N 1.65600 * 104.44894 * 180.02562 * 7 6 3 11 11 C 1.46927 * 120.63060 * 269.72354 * 10 7 6 12 12 C 1.52764 * 109.00666 * 233.58219 * 11 10 7 13 13 C 1.53043 * 109.38212 * 305.58863 * 12 11 10 14 14 C 1.53042 * 109.54064 * 61.23944 * 13 12 11 15 15 H 1.09001 * 109.49341 * 58.58461 * 14 13 12 16 16 C 1.50690 * 109.49642 * 178.68486 * 14 13 12 17 17 H 1.08001 * 120.00180 * 119.84001 * 16 14 13 18 18 C 1.37879 * 120.00001 * 299.83303 * 16 14 13 19 19 N 1.31514 * 120.00373 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99992 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47161 * 90.00618 * 20 18 16 22 22 H 1.48510 * 109.47124 * 210.00358 * 20 18 16 23 23 H 1.48498 * 109.47294 * 330.00508 * 20 18 16 24 24 C 1.46927 * 120.63121 * 90.00099 * 10 7 6 25 25 H 1.09004 * 109.46854 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47446 * 299.99751 * 1 2 3 27 27 H 1.09000 * 109.47268 * 60.00033 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99892 * 5 3 2 29 29 H 1.08992 * 109.47303 * 59.99596 * 5 3 2 30 30 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 31 31 H 1.09001 * 109.46812 * 60.00403 * 6 3 2 32 32 H 1.09002 * 109.46935 * 180.02562 * 6 3 2 33 33 H 1.08995 * 109.58725 * 353.41272 * 11 10 7 34 34 H 1.09007 * 109.58782 * 113.84591 * 11 10 7 35 35 H 1.08999 * 109.56650 * 185.55696 * 12 11 10 36 36 H 1.08997 * 109.38681 * 65.51420 * 12 11 10 37 37 H 1.09000 * 109.45823 * 301.21582 * 13 12 11 38 38 H 1.09001 * 109.44592 * 181.25497 * 13 12 11 39 39 H 0.96998 * 120.00777 * 179.97438 * 19 18 16 40 40 H 1.09006 * 109.58503 * 246.15740 * 24 10 7 41 41 H 1.08998 * 109.58629 * 6.43392 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7715 -1.4425 6 6 3.3589 1.2633 0.7213 7 16 3.1129 0.7109 2.4315 8 8 2.4091 1.6948 3.1770 9 8 2.7176 -0.6537 2.4627 10 7 4.6330 0.7115 3.0885 11 6 5.4760 -0.4903 3.0260 12 6 5.9466 -0.8419 4.4362 13 6 6.6320 0.3754 5.0612 14 6 5.6339 1.5316 5.1574 15 1 4.7776 1.2239 5.7576 16 6 6.3005 2.7191 5.8024 17 1 6.3802 3.6520 5.2641 18 6 6.8086 2.6148 7.0799 19 7 6.7120 1.4788 7.7354 20 14 7.6344 4.0872 7.8797 21 1 6.6203 4.8843 8.6154 22 1 8.6764 3.6161 8.8273 23 1 8.2631 4.9316 6.8324 24 6 5.1619 1.9118 3.7505 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.8828 1.0776 -1.9563 29 1 1.2568 1.8015 -1.9563 30 1 2.6612 2.7671 -1.4424 31 1 4.0241 0.5695 0.2074 32 1 3.8020 2.2592 0.7217 33 1 4.8996 -1.3201 2.6171 34 1 6.3418 -0.2967 2.3925 35 1 6.6513 -1.6720 4.3894 36 1 5.0877 -1.1275 5.0435 37 1 7.4763 0.6752 4.4404 38 1 6.9879 0.1189 6.0590 39 1 7.0697 1.4052 8.6339 40 1 6.0015 2.3052 3.1773 41 1 4.3791 2.6673 3.8171 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594807186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:08 Heat of formation + Delta-G solvation = -124.802052 kcal Electronic energy + Delta-G solvation = -22740.871211 eV Core-core repulsion = 19361.914284 eV Total energy + Delta-G solvation = -3378.956927 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.66473 -37.66476 -36.76699 -35.52556 -33.28288 -33.12544 -31.07790 -30.05357 -28.02042 -26.74458 -25.08274 -23.60111 -21.87089 -21.62015 -19.45713 -18.26650 -17.31648 -17.16822 -16.53818 -16.12956 -15.53732 -15.45746 -14.86646 -14.59869 -13.99159 -13.50173 -13.36886 -13.26556 -13.01307 -12.77125 -12.75221 -12.63842 -12.51829 -12.12648 -11.78131 -11.68486 -11.59529 -11.29188 -11.14349 -10.95391 -10.79962 -10.68968 -10.63205 -10.16594 -9.92769 -9.90158 -9.73548 -9.32070 -8.79732 -8.40622 -8.11717 -5.97971 -4.05550 0.53727 3.03005 3.31661 3.36711 3.38403 3.40702 4.09195 4.36609 4.43695 4.44883 4.65244 4.82625 5.07109 5.13225 5.17596 5.26906 5.31830 5.36497 5.38087 5.52100 5.65148 5.74928 5.83019 5.84823 6.09045 6.26667 6.37886 6.51381 6.66435 6.68924 6.83170 6.94524 7.07017 7.27754 7.48952 7.73872 8.00545 8.13190 8.42338 8.97898 9.58924 11.07519 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.029766 B = 0.004297 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.438497 B = 6514.288075 C = 6866.291761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.381 6.381 3 C 0.093 3.907 4 H 0.075 0.925 5 C -0.165 4.165 6 C -0.641 4.641 7 S 2.607 3.393 8 O -0.955 6.955 9 O -0.946 6.946 10 N -0.994 5.994 11 C 0.122 3.878 12 C -0.131 4.131 13 C -0.110 4.110 14 C 0.042 3.958 15 H 0.032 0.968 16 C -0.515 4.515 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.122 3.878 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.137 0.863 32 H 0.142 0.858 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.035 0.965 38 H 0.094 0.906 39 H 0.260 0.740 40 H 0.055 0.945 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.936 -1.770 -16.797 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.300 6.300 3 C 0.034 3.966 4 H 0.093 0.907 5 C -0.223 4.223 6 C -0.767 4.767 7 S 2.699 3.301 8 O -0.946 6.946 9 O -0.937 6.937 10 N -0.833 5.833 11 C -0.003 4.003 12 C -0.170 4.170 13 C -0.148 4.148 14 C 0.022 3.978 15 H 0.050 0.950 16 C -0.554 4.554 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.002 4.002 25 H 0.112 0.888 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.572 -2.249 -16.216 18.037 hybrid contribution 0.815 1.253 -0.104 1.499 sum -6.756 -0.996 -16.320 17.692 Atomic orbital electron populations 1.22916 0.80353 1.03608 1.00249 1.88049 1.20373 1.26451 1.95104 1.21709 0.91824 0.85843 0.97225 0.90673 1.22205 1.02663 1.02040 0.95408 1.30919 1.04891 1.13767 1.27131 1.05074 0.73872 0.74766 0.76348 1.93588 1.71174 1.62768 1.67032 1.93555 1.80670 1.33099 1.86330 1.57684 1.35056 1.20745 1.69844 1.21337 0.94012 0.85827 0.99112 1.21865 1.00460 0.99638 0.95077 1.21587 0.97773 0.93638 1.01768 1.18926 0.95277 0.94403 0.89220 0.94977 1.21092 1.37664 0.97041 0.99630 0.92477 1.24946 0.95998 0.95803 0.97101 1.69880 1.46157 1.24409 1.12160 0.86592 0.79189 0.82887 0.79265 1.20691 1.21307 1.19947 1.21843 0.97975 0.84095 0.96267 0.88830 0.93528 0.93685 0.91310 0.91952 0.91116 0.84423 0.84017 0.90201 0.92366 0.92572 0.92267 0.94659 0.88778 0.92971 0.92664 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.93 9.39 -41.99 -0.39 -5.32 16 3 C 0.09 1.06 2.77 -26.73 -0.07 0.98 16 4 H 0.08 0.79 7.79 -51.93 -0.40 0.39 16 5 C -0.16 -1.42 9.53 37.16 0.35 -1.06 16 6 C -0.64 -7.58 5.90 37.16 0.22 -7.36 16 7 S 2.61 44.05 5.25 -107.50 -0.56 43.48 16 8 O -0.96 -19.11 16.59 -57.54 -0.95 -20.06 16 9 O -0.95 -18.11 15.92 -61.89 -0.99 -19.09 16 10 N -0.99 -17.89 3.23 -113.76 -0.37 -18.25 16 11 C 0.12 2.05 6.40 -3.93 -0.03 2.02 16 12 C -0.13 -2.53 6.07 -26.83 -0.16 -2.69 16 13 C -0.11 -2.52 4.96 -26.69 -0.13 -2.65 16 14 C 0.04 1.04 2.25 -91.66 -0.21 0.83 16 15 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 16 C -0.52 -13.86 8.56 -34.44 -0.29 -14.15 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 20 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 C 0.12 2.49 5.66 -3.71 -0.02 2.47 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.14 1.42 8.14 -51.92 -0.42 1.00 16 32 H 0.14 1.36 8.14 -51.92 -0.42 0.94 16 33 H 0.08 1.23 6.85 -51.93 -0.36 0.88 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.09 2.44 6.05 -51.93 -0.31 2.13 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.60 6.86 -51.93 -0.36 1.24 16 LS Contribution 337.76 15.07 5.09 5.09 Total: -1.00 -32.85 337.76 -8.77 -41.62 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.86 Total: -0.28 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 0.66 Total: -18.63 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.26 Total: -42.78 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -2.33 Total: -44.48 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 44.05 SS G_CDS: -0.56 Total: 43.48 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.85 -8.77 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.178 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds