Wall clock time and date at job start Fri Apr 10 2020 14:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99706 * 2 1 4 4 H 1.09001 * 109.47103 * 30.00588 * 3 2 1 5 5 C 1.52997 * 109.47264 * 270.00308 * 3 2 1 6 6 C 1.53005 * 109.46812 * 150.00007 * 3 2 1 7 7 S 1.81396 * 109.47158 * 300.00081 * 6 3 2 8 8 O 1.42102 * 110.54289 * 291.62651 * 7 6 3 9 9 O 1.42098 * 110.54189 * 68.37842 * 7 6 3 10 10 N 1.65600 * 104.44894 * 180.02562 * 7 6 3 11 11 C 1.46927 * 120.63060 * 269.72354 * 10 7 6 12 12 C 1.52764 * 109.00666 * 233.58219 * 11 10 7 13 13 C 1.53043 * 109.38212 * 305.58863 * 12 11 10 14 14 C 1.53042 * 109.54064 * 61.23944 * 13 12 11 15 15 H 1.09001 * 109.49341 * 58.58461 * 14 13 12 16 16 C 1.50690 * 109.49642 * 178.68486 * 14 13 12 17 17 H 1.08001 * 120.00180 * 119.84001 * 16 14 13 18 18 C 1.37879 * 120.00001 * 299.83303 * 16 14 13 19 19 N 1.31514 * 120.00373 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99992 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47161 * 90.00618 * 20 18 16 22 22 H 1.48510 * 109.47124 * 210.00358 * 20 18 16 23 23 H 1.48498 * 109.47294 * 330.00508 * 20 18 16 24 24 C 1.46927 * 120.63121 * 90.00099 * 10 7 6 25 25 H 1.09004 * 109.46854 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47446 * 299.99751 * 1 2 3 27 27 H 1.09000 * 109.47268 * 60.00033 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99892 * 5 3 2 29 29 H 1.08992 * 109.47303 * 59.99596 * 5 3 2 30 30 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 31 31 H 1.09001 * 109.46812 * 60.00403 * 6 3 2 32 32 H 1.09002 * 109.46935 * 180.02562 * 6 3 2 33 33 H 1.08995 * 109.58725 * 353.41272 * 11 10 7 34 34 H 1.09007 * 109.58782 * 113.84591 * 11 10 7 35 35 H 1.08999 * 109.56650 * 185.55696 * 12 11 10 36 36 H 1.08997 * 109.38681 * 65.51420 * 12 11 10 37 37 H 1.09000 * 109.45823 * 301.21582 * 13 12 11 38 38 H 1.09001 * 109.44592 * 181.25497 * 13 12 11 39 39 H 0.96998 * 120.00777 * 179.97438 * 19 18 16 40 40 H 1.09006 * 109.58503 * 246.15740 * 24 10 7 41 41 H 1.08998 * 109.58629 * 6.43392 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7715 -1.4425 6 6 3.3589 1.2633 0.7213 7 16 3.1129 0.7109 2.4315 8 8 2.4091 1.6948 3.1770 9 8 2.7176 -0.6537 2.4627 10 7 4.6330 0.7115 3.0885 11 6 5.4760 -0.4903 3.0260 12 6 5.9466 -0.8419 4.4362 13 6 6.6320 0.3754 5.0612 14 6 5.6339 1.5316 5.1574 15 1 4.7776 1.2239 5.7576 16 6 6.3005 2.7191 5.8024 17 1 6.3802 3.6520 5.2641 18 6 6.8086 2.6148 7.0799 19 7 6.7120 1.4788 7.7354 20 14 7.6344 4.0872 7.8797 21 1 6.6203 4.8843 8.6154 22 1 8.6764 3.6161 8.8273 23 1 8.2631 4.9316 6.8324 24 6 5.1619 1.9118 3.7505 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.8828 1.0776 -1.9563 29 1 1.2568 1.8015 -1.9563 30 1 2.6612 2.7671 -1.4424 31 1 4.0241 0.5695 0.2074 32 1 3.8020 2.2592 0.7217 33 1 4.8996 -1.3201 2.6171 34 1 6.3418 -0.2967 2.3925 35 1 6.6513 -1.6720 4.3894 36 1 5.0877 -1.1275 5.0435 37 1 7.4763 0.6752 4.4404 38 1 6.9879 0.1189 6.0590 39 1 7.0697 1.4052 8.6339 40 1 6.0015 2.3052 3.1773 41 1 4.3791 2.6673 3.8171 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594807186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:07 Heat of formation + Delta-G solvation = -148.389818 kcal Electronic energy + Delta-G solvation = -22741.894053 eV Core-core repulsion = 19361.914284 eV Total energy + Delta-G solvation = -3379.979769 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.52034 -39.25412 -38.18681 -36.94021 -35.17881 -33.97909 -32.72088 -31.84701 -28.81440 -27.52845 -27.02016 -25.16155 -23.34779 -22.69390 -21.12071 -19.67573 -18.82175 -18.08510 -18.04406 -17.68479 -16.91456 -16.55138 -16.29435 -15.79357 -15.43250 -15.11844 -14.85834 -14.42415 -14.30111 -14.26214 -13.82201 -13.72936 -13.57473 -13.27254 -13.14983 -13.10539 -12.88614 -12.75565 -12.66284 -12.49912 -12.47669 -11.92727 -11.83136 -11.76370 -11.74230 -11.55275 -11.03169 -10.77537 -10.72136 -10.40415 -9.68442 -8.05228 -6.20948 -0.73855 1.44516 1.45489 1.55359 1.70577 2.46269 2.56047 2.92099 3.20685 3.21629 3.46397 3.80204 3.86891 4.08818 4.18796 4.29048 4.37068 4.39598 4.47157 4.59236 4.60458 4.66512 4.77254 4.83512 4.84388 4.88654 4.92405 4.99460 5.11041 5.25344 5.31027 5.37223 5.56930 5.67033 5.76407 6.00390 6.04208 6.19251 6.39285 6.91865 7.47375 8.98969 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.029766 B = 0.004297 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.438497 B = 6514.288075 C = 6866.291761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.407 6.407 3 C 0.078 3.922 4 H 0.078 0.922 5 C -0.160 4.160 6 C -0.606 4.606 7 S 2.598 3.402 8 O -1.000 7.000 9 O -0.979 6.979 10 N -1.002 6.002 11 C 0.121 3.879 12 C -0.130 4.130 13 C -0.102 4.102 14 C 0.033 3.967 15 H -0.021 1.021 16 C -0.533 4.533 17 H 0.064 0.936 18 C 0.010 3.990 19 N -0.919 5.919 20 Si 0.958 3.042 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.260 1.260 24 C 0.133 3.867 25 H 0.100 0.900 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.164 0.836 32 H 0.173 0.827 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.030 0.970 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.259 0.741 40 H 0.082 0.918 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.134 -0.738 -20.007 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.327 6.327 3 C 0.019 3.981 4 H 0.096 0.904 5 C -0.218 4.218 6 C -0.738 4.738 7 S 2.697 3.303 8 O -0.991 6.991 9 O -0.969 6.969 10 N -0.840 5.840 11 C -0.003 4.003 12 C -0.169 4.169 13 C -0.140 4.140 14 C 0.013 3.987 15 H -0.002 1.002 16 C -0.571 4.571 17 H 0.082 0.918 18 C -0.188 4.188 19 N -0.559 5.559 20 Si 0.783 3.217 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.185 1.185 24 C 0.009 3.991 25 H 0.118 0.882 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.182 0.818 32 H 0.191 0.809 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.775 -1.240 -19.371 20.559 hybrid contribution 0.477 0.906 0.844 1.327 sum -6.298 -0.334 -18.528 19.572 Atomic orbital electron populations 1.23127 0.79215 1.04513 1.01292 1.88008 1.21830 1.27487 1.95356 1.22030 0.91279 0.85634 0.99153 0.90373 1.22195 1.03742 1.02881 0.93007 1.30645 1.06515 1.15921 1.20728 1.05087 0.73025 0.73768 0.78447 1.93529 1.72195 1.63357 1.69992 1.93509 1.80947 1.34754 1.87710 1.57588 1.35045 1.20373 1.70968 1.21480 0.95376 0.85939 0.97544 1.21822 0.99740 0.98901 0.96424 1.21383 0.97780 0.94573 1.00299 1.18921 0.93786 0.94663 0.91367 1.00240 1.21528 1.37445 0.97972 1.00199 0.91791 1.25788 0.96773 0.98406 0.97853 1.70053 1.47109 1.26402 1.12309 0.85564 0.78059 0.79608 0.78437 1.20726 1.21137 1.18453 1.21519 0.98599 0.84884 0.94137 0.88183 0.94138 0.90995 0.90944 0.90702 0.89396 0.81828 0.80880 0.88745 0.88726 0.89830 0.95113 0.93592 0.92484 0.93176 0.90024 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 10.82 113.37 1.23 1.49 16 2 O -0.41 -9.69 9.39 -142.52 -1.34 -11.02 16 3 C 0.08 1.53 2.77 30.60 0.08 1.62 16 4 H 0.08 1.46 7.79 -2.39 -0.02 1.45 16 5 C -0.16 -2.05 9.53 71.98 0.69 -1.36 16 6 C -0.61 -12.12 5.90 71.98 0.42 -11.70 16 7 S 2.60 85.87 5.25 -56.49 -0.30 85.57 16 8 O -1.00 -40.82 16.59 -127.65 -2.12 -42.93 16 9 O -0.98 -37.44 15.92 -123.49 -1.97 -39.40 16 10 N -1.00 -35.04 3.23 -513.84 -1.66 -36.70 16 11 C 0.12 3.83 6.40 86.22 0.55 4.38 16 12 C -0.13 -5.01 6.07 30.53 0.19 -4.82 16 13 C -0.10 -4.78 4.96 30.62 0.15 -4.63 16 14 C 0.03 1.67 2.25 -11.47 -0.03 1.65 16 15 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 16 C -0.53 -29.13 8.56 25.60 0.22 -28.91 16 17 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 18 C 0.01 0.57 5.30 84.66 0.45 1.02 16 19 N -0.92 -54.13 11.32 21.45 0.24 -53.89 16 20 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 24 C 0.13 5.37 5.66 86.36 0.49 5.86 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.04 0.76 8.08 -2.39 -0.02 0.74 16 27 H 0.07 0.88 7.87 -2.39 -0.02 0.86 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.79 7.87 -2.39 -0.02 0.78 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.16 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.17 2.47 8.14 -2.39 -0.02 2.46 16 33 H 0.09 2.73 6.85 -2.39 -0.02 2.72 16 34 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 3.08 6.05 -2.39 -0.01 3.07 16 39 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 40 H 0.08 2.85 8.14 -2.38 -0.02 2.84 16 41 H 0.07 2.94 6.86 -2.39 -0.02 2.93 16 Total: -1.00 -75.34 337.76 0.33 -75.02 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.99 Total: 13.27 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 4.44 Total: -35.41 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -1.42 Total: -90.59 kcal Atomic # 8 Polarization: -87.94 SS G_CDS: -5.42 Total: -93.36 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 85.87 SS G_CDS: -0.30 Total: 85.57 kcal Total: -75.34 0.33 -75.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.374 kcal (2) G-P(sol) polarization free energy of solvation -75.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds