Wall clock time and date at job start Fri Apr 10 2020 14:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99863 * 2 1 4 4 H 1.08998 * 109.46905 * 329.99555 * 3 2 1 5 5 C 1.53000 * 109.47325 * 89.99798 * 3 2 1 6 6 C 1.53004 * 109.47351 * 209.99718 * 3 2 1 7 7 S 1.81403 * 109.46896 * 64.99631 * 6 3 2 8 8 O 1.42099 * 110.53972 * 68.37775 * 7 6 3 9 9 O 1.42099 * 110.54290 * 291.62616 * 7 6 3 10 10 N 1.65601 * 104.44698 * 180.02562 * 7 6 3 11 11 C 1.46931 * 120.60529 * 269.97811 * 10 7 6 12 12 C 1.53196 * 108.77131 * 233.58060 * 11 10 7 13 13 C 1.53039 * 109.33748 * 305.41286 * 12 11 10 14 14 C 1.53045 * 109.53694 * 61.35198 * 13 12 11 15 15 H 1.08993 * 109.49902 * 58.61908 * 14 13 12 16 16 C 1.50702 * 109.49612 * 178.68303 * 14 13 12 17 17 H 1.07998 * 119.99756 * 119.99608 * 16 14 13 18 18 C 1.37881 * 119.99853 * 299.99779 * 16 14 13 19 19 N 1.31513 * 119.99947 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99699 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47168 * 60.00001 * 20 18 16 22 22 H 1.48503 * 109.46804 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47041 * 299.99802 * 20 18 16 24 24 C 1.46928 * 120.62733 * 90.00512 * 10 7 6 25 25 H 1.08997 * 109.47371 * 300.00238 * 1 2 3 26 26 H 1.08996 * 109.47107 * 60.00713 * 1 2 3 27 27 H 1.09005 * 109.47290 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47325 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.46871 * 299.99470 * 5 3 2 30 30 H 1.08998 * 109.47328 * 60.00016 * 5 3 2 31 31 H 1.08999 * 109.46652 * 305.00276 * 6 3 2 32 32 H 1.08998 * 109.47454 * 184.99371 * 6 3 2 33 33 H 1.08996 * 109.56502 * 113.80754 * 11 10 7 34 34 H 1.09001 * 109.61713 * 353.38176 * 11 10 7 35 35 H 1.09002 * 109.49815 * 185.44599 * 12 11 10 36 36 H 1.09000 * 109.49595 * 65.37996 * 12 11 10 37 37 H 1.09001 * 109.45915 * 181.36781 * 13 12 11 38 38 H 1.08998 * 109.46049 * 301.34328 * 13 12 11 39 39 H 0.97000 * 119.99195 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.58597 * 6.59731 * 24 10 7 41 41 H 1.09001 * 109.69741 * 246.24550 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3589 1.2634 -0.7212 7 16 3.0974 0.8544 -2.4691 8 8 2.4375 1.9207 -3.1373 9 8 2.6466 -0.4863 -2.6054 10 7 4.6190 0.8415 -3.1225 11 6 5.1997 2.0660 -3.6901 12 6 5.6625 1.7747 -5.1211 13 6 6.6112 0.5739 -5.1124 14 6 5.8728 -0.6579 -4.5834 15 1 5.0056 -0.8600 -5.2120 16 6 6.7982 -1.8471 -4.6055 17 1 7.0333 -2.3655 -3.6877 18 6 7.3447 -2.2732 -5.7975 19 7 7.0587 -1.6416 -6.9151 20 14 8.4912 -3.7477 -5.8250 21 1 7.7737 -4.9423 -5.3119 22 1 8.9392 -4.0004 -7.2182 23 1 9.6718 -3.4729 -4.9671 24 6 5.4131 -0.3945 -3.1460 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.6605 2.7675 1.4425 29 1 1.2567 1.8016 1.9562 30 1 2.8828 1.0776 1.9564 31 1 3.9930 0.5052 -0.2616 32 1 3.8426 2.2371 -0.6444 33 1 6.0519 2.3793 -3.0871 34 1 4.4484 2.8556 -3.7026 35 1 6.1822 2.6460 -5.5199 36 1 4.7972 1.5502 -5.7447 37 1 6.9608 0.3799 -6.1264 38 1 7.4643 0.7897 -4.4692 39 1 7.4430 -1.9417 -7.7536 40 1 4.8022 -1.2279 -2.7992 41 1 6.2830 -0.2847 -2.4984 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594807187.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:11 Heat of formation + Delta-G solvation = -124.478341 kcal Electronic energy + Delta-G solvation = -22748.865364 eV Core-core repulsion = 19369.922475 eV Total energy + Delta-G solvation = -3378.942890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.64110 -37.65253 -36.79096 -35.53581 -33.27557 -33.12497 -31.06298 -30.04237 -28.01652 -26.72521 -25.07642 -23.59769 -21.87608 -21.61662 -19.45975 -18.28018 -17.35188 -17.12085 -16.54773 -16.10441 -15.61281 -15.38719 -14.88037 -14.57223 -13.97892 -13.47815 -13.38917 -13.25008 -12.98717 -12.82565 -12.75246 -12.62054 -12.52683 -12.09609 -11.78467 -11.70477 -11.66233 -11.24013 -11.12543 -10.91719 -10.80442 -10.70412 -10.63963 -10.17652 -9.90272 -9.89229 -9.73513 -9.31227 -8.79629 -8.39308 -8.11041 -5.96499 -4.03906 0.52458 3.01345 3.34296 3.38848 3.39010 3.41749 4.08393 4.34474 4.43659 4.48056 4.62236 4.82222 5.08299 5.12022 5.19171 5.25183 5.33068 5.35646 5.37507 5.54843 5.65834 5.72362 5.82283 5.83456 6.05809 6.26897 6.38125 6.53364 6.67851 6.68290 6.86447 6.93954 7.06995 7.27671 7.49404 7.75119 8.01893 8.14338 8.43885 8.99314 9.60454 11.08938 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024852 B = 0.004522 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.413438 B = 6190.035734 C = 6707.452068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.378 6.378 3 C 0.095 3.905 4 H 0.073 0.927 5 C -0.165 4.165 6 C -0.641 4.641 7 S 2.605 3.395 8 O -0.967 6.967 9 O -0.935 6.935 10 N -0.993 5.993 11 C 0.121 3.879 12 C -0.131 4.131 13 C -0.110 4.110 14 C 0.042 3.958 15 H 0.032 0.968 16 C -0.515 4.515 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.123 3.877 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.035 0.965 39 H 0.261 0.739 40 H 0.080 0.920 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.141 9.373 13.868 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.297 6.297 3 C 0.035 3.965 4 H 0.091 0.909 5 C -0.224 4.224 6 C -0.767 4.767 7 S 2.697 3.303 8 O -0.957 6.957 9 O -0.926 6.926 10 N -0.833 5.833 11 C -0.004 4.004 12 C -0.170 4.170 13 C -0.148 4.148 14 C 0.022 3.978 15 H 0.050 0.950 16 C -0.554 4.554 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.001 4.001 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.796 9.032 13.241 18.283 hybrid contribution 0.997 -0.355 0.542 1.190 sum -7.799 8.676 13.783 18.057 Atomic orbital electron populations 1.22910 0.80406 1.03679 1.00091 1.88066 1.20294 1.26272 1.95075 1.21681 0.91730 0.85886 0.97182 0.90939 1.22213 1.02710 1.01952 0.95483 1.30931 1.05066 1.12845 1.27901 1.05136 0.73901 0.74644 0.76576 1.93543 1.73185 1.58153 1.70832 1.93604 1.79003 1.35059 1.84891 1.57678 1.35887 1.17387 1.72300 1.21433 0.97790 0.85198 0.96005 1.21936 1.00695 0.99853 0.94488 1.21594 0.96120 0.92823 1.04270 1.18926 0.95972 0.93507 0.89380 0.94977 1.21063 1.27896 1.12765 0.93687 0.92505 1.24941 0.96538 0.96747 0.95602 1.69872 1.44351 1.40143 0.98318 0.86649 0.81107 0.83251 0.76898 1.20233 1.21369 1.20335 1.21846 0.93749 0.82627 1.01884 0.93757 0.93627 0.88767 0.91219 0.91951 0.91190 0.84077 0.84261 0.92298 0.90410 0.92631 0.92255 0.88729 0.94666 0.92940 0.90124 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.38 -5.06 9.68 -36.21 -0.35 -5.41 16 3 C 0.09 1.08 2.72 -26.73 -0.07 1.00 16 4 H 0.07 0.74 7.79 -51.93 -0.40 0.34 16 5 C -0.17 -1.42 9.53 37.16 0.35 -1.06 16 6 C -0.64 -7.58 5.87 37.16 0.22 -7.36 16 7 S 2.61 43.86 5.31 -107.50 -0.57 43.29 16 8 O -0.97 -17.83 16.59 -57.54 -0.95 -18.78 16 9 O -0.94 -19.23 16.11 -59.92 -0.97 -20.20 16 10 N -0.99 -17.83 3.22 -113.52 -0.37 -18.20 16 11 C 0.12 1.99 6.43 -3.71 -0.02 1.96 16 12 C -0.13 -2.49 6.08 -26.61 -0.16 -2.65 16 13 C -0.11 -2.52 4.96 -26.69 -0.13 -2.66 16 14 C 0.04 1.05 2.25 -91.65 -0.21 0.85 16 15 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 16 C -0.52 -13.95 8.56 -34.44 -0.29 -14.24 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.24 11.31 55.43 0.63 -24.62 16 20 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.12 2.53 5.65 -3.71 -0.02 2.51 16 25 H 0.04 0.34 7.87 -51.93 -0.41 -0.07 16 26 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.14 1.57 8.14 -51.92 -0.42 1.15 16 32 H 0.14 1.23 8.14 -51.92 -0.42 0.81 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.15 6.86 -51.93 -0.36 0.79 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.09 2.45 6.04 -51.93 -0.31 2.14 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.08 1.69 6.86 -51.93 -0.36 1.34 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -32.98 338.23 -8.70 -41.69 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.86 Total: -0.32 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 0.66 Total: -18.66 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.26 Total: -42.82 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -2.27 Total: -44.40 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 43.86 SS G_CDS: -0.57 Total: 43.29 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.98 -8.70 -41.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807187.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.791 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds