Wall clock time and date at job start Fri Apr 10 2020 14:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99863 * 2 1 4 4 H 1.08998 * 109.46905 * 329.99555 * 3 2 1 5 5 C 1.53000 * 109.47325 * 89.99798 * 3 2 1 6 6 C 1.53004 * 109.47351 * 209.99718 * 3 2 1 7 7 S 1.81403 * 109.46896 * 64.99631 * 6 3 2 8 8 O 1.42099 * 110.53972 * 68.37775 * 7 6 3 9 9 O 1.42099 * 110.54290 * 291.62616 * 7 6 3 10 10 N 1.65601 * 104.44698 * 180.02562 * 7 6 3 11 11 C 1.46931 * 120.60529 * 269.97811 * 10 7 6 12 12 C 1.53196 * 108.77131 * 233.58060 * 11 10 7 13 13 C 1.53039 * 109.33748 * 305.41286 * 12 11 10 14 14 C 1.53045 * 109.53694 * 61.35198 * 13 12 11 15 15 H 1.08993 * 109.49902 * 58.61908 * 14 13 12 16 16 C 1.50702 * 109.49612 * 178.68303 * 14 13 12 17 17 H 1.07998 * 119.99756 * 119.99608 * 16 14 13 18 18 C 1.37881 * 119.99853 * 299.99779 * 16 14 13 19 19 N 1.31513 * 119.99947 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99699 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47168 * 60.00001 * 20 18 16 22 22 H 1.48503 * 109.46804 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47041 * 299.99802 * 20 18 16 24 24 C 1.46928 * 120.62733 * 90.00512 * 10 7 6 25 25 H 1.08997 * 109.47371 * 300.00238 * 1 2 3 26 26 H 1.08996 * 109.47107 * 60.00713 * 1 2 3 27 27 H 1.09005 * 109.47290 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47325 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.46871 * 299.99470 * 5 3 2 30 30 H 1.08998 * 109.47328 * 60.00016 * 5 3 2 31 31 H 1.08999 * 109.46652 * 305.00276 * 6 3 2 32 32 H 1.08998 * 109.47454 * 184.99371 * 6 3 2 33 33 H 1.08996 * 109.56502 * 113.80754 * 11 10 7 34 34 H 1.09001 * 109.61713 * 353.38176 * 11 10 7 35 35 H 1.09002 * 109.49815 * 185.44599 * 12 11 10 36 36 H 1.09000 * 109.49595 * 65.37996 * 12 11 10 37 37 H 1.09001 * 109.45915 * 181.36781 * 13 12 11 38 38 H 1.08998 * 109.46049 * 301.34328 * 13 12 11 39 39 H 0.97000 * 119.99195 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.58597 * 6.59731 * 24 10 7 41 41 H 1.09001 * 109.69741 * 246.24550 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3589 1.2634 -0.7212 7 16 3.0974 0.8544 -2.4691 8 8 2.4375 1.9207 -3.1373 9 8 2.6466 -0.4863 -2.6054 10 7 4.6190 0.8415 -3.1225 11 6 5.1997 2.0660 -3.6901 12 6 5.6625 1.7747 -5.1211 13 6 6.6112 0.5739 -5.1124 14 6 5.8728 -0.6579 -4.5834 15 1 5.0056 -0.8600 -5.2120 16 6 6.7982 -1.8471 -4.6055 17 1 7.0333 -2.3655 -3.6877 18 6 7.3447 -2.2732 -5.7975 19 7 7.0587 -1.6416 -6.9151 20 14 8.4912 -3.7477 -5.8250 21 1 7.7737 -4.9423 -5.3119 22 1 8.9392 -4.0004 -7.2182 23 1 9.6718 -3.4729 -4.9671 24 6 5.4131 -0.3945 -3.1460 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.6605 2.7675 1.4425 29 1 1.2567 1.8016 1.9562 30 1 2.8828 1.0776 1.9564 31 1 3.9930 0.5052 -0.2616 32 1 3.8426 2.2371 -0.6444 33 1 6.0519 2.3793 -3.0871 34 1 4.4484 2.8556 -3.7026 35 1 6.1822 2.6460 -5.5199 36 1 4.7972 1.5502 -5.7447 37 1 6.9608 0.3799 -6.1264 38 1 7.4643 0.7897 -4.4692 39 1 7.4430 -1.9417 -7.7536 40 1 4.8022 -1.2279 -2.7992 41 1 6.2830 -0.2847 -2.4984 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594807187.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:10 Heat of formation + Delta-G solvation = -148.540624 kcal Electronic energy + Delta-G solvation = -22749.908783 eV Core-core repulsion = 19369.922475 eV Total energy + Delta-G solvation = -3379.986309 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.50925 -39.24168 -38.19700 -36.95120 -35.18191 -33.98391 -32.70687 -31.83624 -28.80897 -27.53167 -27.02069 -25.15677 -23.35068 -22.69102 -21.12116 -19.68614 -18.82664 -18.12956 -17.98944 -17.69004 -16.94912 -16.52623 -16.30228 -15.80229 -15.41580 -15.11890 -14.85763 -14.41783 -14.27179 -14.24421 -13.79910 -13.74763 -13.60925 -13.25843 -13.20554 -13.11629 -12.85601 -12.70170 -12.67813 -12.53148 -12.48967 -11.91397 -11.84423 -11.76659 -11.75146 -11.54725 -11.03188 -10.77715 -10.72011 -10.39512 -9.68223 -8.05307 -6.20953 -0.74657 1.44185 1.46570 1.53455 1.69504 2.46163 2.57580 2.91672 3.20327 3.21260 3.46150 3.80061 3.86155 4.07115 4.18188 4.29360 4.37491 4.37979 4.47248 4.59081 4.61022 4.66106 4.77441 4.83382 4.84247 4.88225 4.92383 5.00412 5.11308 5.25711 5.30733 5.37516 5.56520 5.66748 5.76904 6.00765 6.06922 6.19799 6.39552 6.91334 7.47164 8.98544 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024852 B = 0.004522 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.413438 B = 6190.035734 C = 6707.452068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.410 6.410 3 C 0.079 3.921 4 H 0.082 0.918 5 C -0.160 4.160 6 C -0.606 4.606 7 S 2.596 3.404 8 O -0.991 6.991 9 O -0.988 6.988 10 N -1.002 6.002 11 C 0.119 3.881 12 C -0.130 4.130 13 C -0.102 4.102 14 C 0.034 3.966 15 H -0.021 1.021 16 C -0.535 4.535 17 H 0.061 0.939 18 C 0.011 3.989 19 N -0.918 5.918 20 Si 0.957 3.043 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.264 1.264 24 C 0.135 3.865 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.155 0.845 32 H 0.182 0.818 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.030 0.970 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.259 0.741 40 H 0.068 0.932 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.402 10.992 16.882 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.330 6.330 3 C 0.019 3.981 4 H 0.100 0.900 5 C -0.219 4.219 6 C -0.738 4.738 7 S 2.695 3.305 8 O -0.982 6.982 9 O -0.978 6.978 10 N -0.839 5.839 11 C -0.005 4.005 12 C -0.169 4.169 13 C -0.141 4.141 14 C 0.014 3.986 15 H -0.002 1.002 16 C -0.573 4.573 17 H 0.080 0.920 18 C -0.187 4.187 19 N -0.558 5.558 20 Si 0.783 3.217 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.189 1.189 24 C 0.011 3.989 25 H 0.091 0.909 26 H 0.060 0.940 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.173 0.827 32 H 0.200 0.800 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.062 10.648 16.194 20.992 hybrid contribution 0.674 -0.828 -0.358 1.126 sum -7.389 9.820 15.837 20.046 Atomic orbital electron populations 1.23113 0.79238 1.04408 1.01323 1.88025 1.21836 1.27734 1.95357 1.22044 0.91248 0.85559 0.99208 0.90047 1.22205 1.03716 1.02932 0.93012 1.30662 1.06543 1.15574 1.21056 1.05141 0.73103 0.73357 0.78879 1.93503 1.73536 1.58017 1.73137 1.93541 1.79788 1.37729 1.86738 1.57574 1.35508 1.16882 1.73966 1.21620 0.99723 0.84942 0.94253 1.21896 0.99004 0.99191 0.96799 1.21384 0.96977 0.93694 1.02013 1.18913 0.93955 0.94139 0.91621 1.00248 1.21497 1.28118 1.13728 0.93988 0.92029 1.25771 0.98157 0.99477 0.95307 1.70045 1.45397 1.41580 0.98752 0.85627 0.79386 0.79734 0.76971 1.20030 1.21286 1.18920 1.21473 0.94628 0.83800 0.99038 0.90910 0.93970 0.88521 0.88990 0.90706 0.91305 0.82707 0.80001 0.88546 0.88376 0.89729 0.95074 0.92429 0.93643 0.93149 0.91380 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 10.82 113.37 1.23 1.51 16 2 O -0.41 -10.32 9.68 -148.05 -1.43 -11.75 16 3 C 0.08 1.54 2.72 30.60 0.08 1.62 16 4 H 0.08 1.43 7.79 -2.39 -0.02 1.41 16 5 C -0.16 -2.04 9.53 71.98 0.69 -1.36 16 6 C -0.61 -12.12 5.87 71.98 0.42 -11.70 16 7 S 2.60 85.39 5.31 -56.49 -0.30 85.09 16 8 O -0.99 -35.90 16.59 -127.65 -2.12 -38.02 16 9 O -0.99 -41.89 16.11 -125.38 -2.02 -43.91 16 10 N -1.00 -34.95 3.22 -513.05 -1.65 -36.60 16 11 C 0.12 3.63 6.43 86.36 0.56 4.18 16 12 C -0.13 -4.93 6.08 30.67 0.19 -4.74 16 13 C -0.10 -4.79 4.96 30.62 0.15 -4.64 16 14 C 0.03 1.74 2.25 -11.46 -0.03 1.72 16 15 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 16 C -0.53 -29.64 8.56 25.60 0.22 -29.42 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 18 C 0.01 0.64 5.30 84.66 0.45 1.09 16 19 N -0.92 -54.28 11.31 21.45 0.24 -54.03 16 20 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 24 C 0.14 5.59 5.65 86.36 0.49 6.08 16 25 H 0.07 0.93 7.87 -2.39 -0.02 0.91 16 26 H 0.04 0.80 8.08 -2.39 -0.02 0.78 16 27 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.07 0.79 7.87 -2.39 -0.02 0.77 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.15 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.18 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.10 2.62 6.86 -2.39 -0.02 2.60 16 35 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 3.11 6.04 -2.39 -0.01 3.10 16 38 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 40 H 0.07 2.94 6.86 -2.39 -0.02 2.92 16 41 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -76.32 338.23 0.18 -76.14 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.99 Total: 12.80 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 4.44 Total: -35.66 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -1.41 Total: -90.63 kcal Atomic # 8 Polarization: -88.11 SS G_CDS: -5.57 Total: -93.68 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 85.39 SS G_CDS: -0.30 Total: 85.09 kcal Total: -76.32 0.18 -76.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807187.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.405 kcal (2) G-P(sol) polarization free energy of solvation -76.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds