Wall clock time and date at job start Fri Apr 10 2020 14:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 114.00036 * 2 1 4 4 H 1.08996 * 109.46799 * 329.98948 * 3 2 1 5 5 C 1.52997 * 109.47321 * 89.99767 * 3 2 1 6 6 C 1.53006 * 109.46748 * 209.99666 * 3 2 1 7 7 S 1.81400 * 109.47028 * 64.99816 * 6 3 2 8 8 O 1.42096 * 110.54395 * 291.62466 * 7 6 3 9 9 O 1.42098 * 110.54361 * 68.37618 * 7 6 3 10 10 N 1.65600 * 104.44783 * 179.97438 * 7 6 3 11 11 C 1.46926 * 120.62759 * 269.71868 * 10 7 6 12 12 C 1.53621 * 108.54368 * 126.36978 * 11 10 7 13 13 C 1.53045 * 109.24409 * 54.85531 * 12 11 10 14 14 C 1.53046 * 109.53464 * 298.51566 * 13 12 11 15 15 H 1.08991 * 109.49486 * 301.40776 * 14 13 12 16 16 C 1.50704 * 109.49571 * 181.31320 * 14 13 12 17 17 H 1.07997 * 119.99844 * 240.16212 * 16 14 13 18 18 C 1.37879 * 119.99956 * 60.16089 * 16 14 13 19 19 N 1.31516 * 119.99610 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99852 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46946 * 60.00109 * 20 18 16 22 22 H 1.48501 * 109.46864 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47071 * 300.00108 * 20 18 16 24 24 C 1.46921 * 120.63272 * 90.00184 * 10 7 6 25 25 H 1.09002 * 109.47624 * 300.00711 * 1 2 3 26 26 H 1.09004 * 109.47067 * 60.00406 * 1 2 3 27 27 H 1.09001 * 109.47434 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99798 * 5 3 2 29 29 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 30 30 H 1.09004 * 109.47261 * 59.99970 * 5 3 2 31 31 H 1.08996 * 109.46945 * 184.99432 * 6 3 2 32 32 H 1.09000 * 109.47314 * 304.99554 * 6 3 2 33 33 H 1.09003 * 109.59158 * 246.20033 * 11 10 7 34 34 H 1.08997 * 109.59266 * 6.62749 * 11 10 7 35 35 H 1.09000 * 109.63446 * 294.86360 * 12 11 10 36 36 H 1.09001 * 109.46371 * 174.74088 * 12 11 10 37 37 H 1.08990 * 109.46216 * 178.49304 * 13 12 11 38 38 H 1.09002 * 109.44399 * 58.52064 * 13 12 11 39 39 H 0.96999 * 119.99118 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.58436 * 353.36714 * 24 10 7 41 41 H 1.08999 * 109.58920 * 113.65274 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5140 5 6 2.2176 1.7715 1.4425 6 6 3.3589 1.2632 -0.7212 7 16 3.0974 0.8542 -2.4691 8 8 2.6465 -0.4864 -2.6054 9 8 2.4376 1.9206 -3.1374 10 7 4.6188 0.8425 -3.1228 11 6 5.1968 2.0658 -3.6956 12 6 6.5617 2.3163 -3.0366 13 6 7.4370 1.0716 -3.2005 14 6 6.7743 -0.1161 -2.4987 15 1 6.6339 0.1171 -1.4433 16 6 7.6523 -1.3335 -2.6330 17 1 7.2788 -2.2164 -3.1303 18 6 8.9324 -1.3201 -2.1210 19 7 9.3873 -0.2447 -1.5159 20 14 10.0205 -2.8295 -2.2869 21 1 10.2126 -3.1455 -3.7251 22 1 11.3392 -2.5603 -1.6593 23 1 9.3749 -3.9820 -1.6087 24 6 5.4139 -0.3927 -3.1466 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.2567 1.8016 1.9563 29 1 2.6614 2.7671 1.4424 30 1 2.8828 1.0776 1.9564 31 1 3.8427 2.2369 -0.6444 32 1 3.9931 0.5051 -0.2616 33 1 5.3247 1.9409 -4.7709 34 1 4.5348 2.9093 -3.4998 35 1 6.4233 2.5267 -1.9761 36 1 7.0459 3.1671 -3.5160 37 1 8.4158 1.2551 -2.7576 38 1 7.5543 0.8475 -4.2608 39 1 10.2878 -0.2355 -1.1555 40 1 4.8951 -1.1720 -2.5884 41 1 5.5569 -0.7155 -4.1779 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594807188.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:14 Heat of formation + Delta-G solvation = -126.659022 kcal Electronic energy + Delta-G solvation = -22931.406702 eV Core-core repulsion = 19552.369251 eV Total energy + Delta-G solvation = -3379.037451 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.56255 -37.70106 -36.80917 -35.58535 -33.31055 -33.03056 -31.08090 -30.09302 -27.91080 -26.67393 -25.11761 -23.61650 -21.84355 -21.62088 -19.42862 -18.30134 -17.38537 -17.09043 -16.48801 -16.15805 -15.62981 -15.33926 -14.78481 -14.65153 -13.94576 -13.49636 -13.35934 -13.21626 -12.92520 -12.79185 -12.69178 -12.66907 -12.46742 -12.14403 -11.77802 -11.69183 -11.67635 -11.22110 -11.03797 -10.96882 -10.85470 -10.76431 -10.64375 -10.26803 -9.95003 -9.93431 -9.71646 -9.35433 -8.87419 -8.44270 -8.13505 -6.03589 -4.10586 0.57135 3.01134 3.31008 3.35334 3.38979 3.46555 4.07345 4.40224 4.42711 4.53734 4.68761 4.92112 5.14148 5.19853 5.22473 5.23845 5.28041 5.46784 5.49952 5.58213 5.67285 5.80052 5.82247 5.98062 5.99792 6.26564 6.33061 6.49411 6.61552 6.66109 6.86831 6.94007 7.03256 7.19294 7.42118 7.68591 7.90087 8.06785 8.37868 8.92838 9.54621 11.01741 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.005019 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.673356 B = 5577.770576 C = 6023.960998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.378 6.378 3 C 0.096 3.904 4 H 0.071 0.929 5 C -0.166 4.166 6 C -0.637 4.637 7 S 2.609 3.391 8 O -0.943 6.943 9 O -0.971 6.971 10 N -0.994 5.994 11 C 0.124 3.876 12 C -0.135 4.135 13 C -0.110 4.110 14 C 0.038 3.962 15 H 0.029 0.971 16 C -0.516 4.516 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.126 3.874 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.036 0.964 39 H 0.261 0.739 40 H 0.077 0.923 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.746 6.584 3.088 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.297 6.297 3 C 0.036 3.964 4 H 0.089 0.911 5 C -0.224 4.224 6 C -0.764 4.764 7 S 2.702 3.298 8 O -0.933 6.933 9 O -0.962 6.962 10 N -0.833 5.833 11 C -0.001 4.001 12 C -0.175 4.175 13 C -0.148 4.148 14 C 0.018 3.982 15 H 0.047 0.953 16 C -0.555 4.555 17 H 0.076 0.924 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.202 1.202 24 C 0.002 3.998 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.279 6.306 2.710 14.948 hybrid contribution 1.062 -0.343 0.589 1.262 sum -12.217 5.963 3.299 13.989 Atomic orbital electron populations 1.22896 0.80609 1.03546 1.00023 1.88079 1.20105 1.26419 1.95076 1.21691 0.91665 0.85671 0.97338 0.91082 1.22213 1.02636 1.02158 0.95400 1.30882 1.05023 1.13391 1.27122 1.04953 0.73637 0.74435 0.76776 1.93581 1.79216 1.35340 1.85204 1.93538 1.73359 1.58121 1.71164 1.57683 1.35344 1.17470 1.72818 1.21490 0.95477 0.85050 0.98104 1.22107 0.95432 1.00021 0.99891 1.21581 1.00899 0.92963 0.99377 1.19001 0.89477 0.94455 0.95240 0.95310 1.21083 0.98204 0.98957 1.37237 0.92395 1.24929 0.97870 0.96025 0.94908 1.69863 1.17413 1.27562 1.37988 0.86653 0.79604 0.83339 0.78380 1.20249 1.21377 1.20220 1.21819 0.93657 0.82632 1.01691 0.93746 0.93786 0.88867 0.92043 0.91145 0.90996 0.84064 0.83555 0.91548 0.90740 0.92596 0.92590 0.88784 0.94510 0.92948 0.90484 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.38 -5.37 9.68 -36.21 -0.35 -5.72 16 3 C 0.10 1.20 2.72 -26.73 -0.07 1.12 16 4 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 5 C -0.17 -1.68 9.53 37.16 0.35 -1.32 16 6 C -0.64 -8.68 5.87 37.16 0.22 -8.47 16 7 S 2.61 44.09 5.27 -107.50 -0.57 43.52 16 8 O -0.94 -18.76 16.25 -59.92 -0.97 -19.73 16 9 O -0.97 -17.44 16.71 -57.54 -0.96 -18.41 16 10 N -0.99 -17.82 3.21 -113.28 -0.36 -18.19 16 11 C 0.12 2.03 6.34 -3.49 -0.02 2.01 16 12 C -0.14 -2.36 6.10 -26.39 -0.16 -2.52 16 13 C -0.11 -2.41 4.96 -26.68 -0.13 -2.54 16 14 C 0.04 0.89 2.25 -91.65 -0.21 0.69 16 15 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 16 C -0.52 -13.53 8.56 -34.44 -0.29 -13.83 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -24.28 11.32 55.43 0.63 -23.65 16 20 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.13 2.59 5.54 -3.71 -0.02 2.57 16 25 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 26 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.52 7.87 -51.93 -0.41 0.12 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.14 1.58 8.14 -51.93 -0.42 1.15 16 32 H 0.15 2.07 8.14 -51.92 -0.42 1.65 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.07 7.09 -51.93 -0.37 0.70 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 2.33 6.05 -51.93 -0.31 2.01 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.08 1.59 7.10 -51.93 -0.37 1.22 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 338.75 15.07 5.10 5.10 Total: -1.00 -31.31 338.75 -8.73 -40.04 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.88 Total: 0.64 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 0.66 Total: -19.33 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.26 Total: -41.83 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -2.29 Total: -43.85 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 44.09 SS G_CDS: -0.57 Total: 43.52 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.31 -8.73 -40.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807188.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.622 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds