Wall clock time and date at job start Fri Apr 10 2020 14:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 114.00036 * 2 1 4 4 H 1.08996 * 109.46799 * 329.98948 * 3 2 1 5 5 C 1.52997 * 109.47321 * 89.99767 * 3 2 1 6 6 C 1.53006 * 109.46748 * 209.99666 * 3 2 1 7 7 S 1.81400 * 109.47028 * 64.99816 * 6 3 2 8 8 O 1.42096 * 110.54395 * 291.62466 * 7 6 3 9 9 O 1.42098 * 110.54361 * 68.37618 * 7 6 3 10 10 N 1.65600 * 104.44783 * 179.97438 * 7 6 3 11 11 C 1.46926 * 120.62759 * 269.71868 * 10 7 6 12 12 C 1.53621 * 108.54368 * 126.36978 * 11 10 7 13 13 C 1.53045 * 109.24409 * 54.85531 * 12 11 10 14 14 C 1.53046 * 109.53464 * 298.51566 * 13 12 11 15 15 H 1.08991 * 109.49486 * 301.40776 * 14 13 12 16 16 C 1.50704 * 109.49571 * 181.31320 * 14 13 12 17 17 H 1.07997 * 119.99844 * 240.16212 * 16 14 13 18 18 C 1.37879 * 119.99956 * 60.16089 * 16 14 13 19 19 N 1.31516 * 119.99610 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99852 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46946 * 60.00109 * 20 18 16 22 22 H 1.48501 * 109.46864 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47071 * 300.00108 * 20 18 16 24 24 C 1.46921 * 120.63272 * 90.00184 * 10 7 6 25 25 H 1.09002 * 109.47624 * 300.00711 * 1 2 3 26 26 H 1.09004 * 109.47067 * 60.00406 * 1 2 3 27 27 H 1.09001 * 109.47434 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99798 * 5 3 2 29 29 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 30 30 H 1.09004 * 109.47261 * 59.99970 * 5 3 2 31 31 H 1.08996 * 109.46945 * 184.99432 * 6 3 2 32 32 H 1.09000 * 109.47314 * 304.99554 * 6 3 2 33 33 H 1.09003 * 109.59158 * 246.20033 * 11 10 7 34 34 H 1.08997 * 109.59266 * 6.62749 * 11 10 7 35 35 H 1.09000 * 109.63446 * 294.86360 * 12 11 10 36 36 H 1.09001 * 109.46371 * 174.74088 * 12 11 10 37 37 H 1.08990 * 109.46216 * 178.49304 * 13 12 11 38 38 H 1.09002 * 109.44399 * 58.52064 * 13 12 11 39 39 H 0.96999 * 119.99118 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.58436 * 353.36714 * 24 10 7 41 41 H 1.08999 * 109.58920 * 113.65274 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5140 5 6 2.2176 1.7715 1.4425 6 6 3.3589 1.2632 -0.7212 7 16 3.0974 0.8542 -2.4691 8 8 2.6465 -0.4864 -2.6054 9 8 2.4376 1.9206 -3.1374 10 7 4.6188 0.8425 -3.1228 11 6 5.1968 2.0658 -3.6956 12 6 6.5617 2.3163 -3.0366 13 6 7.4370 1.0716 -3.2005 14 6 6.7743 -0.1161 -2.4987 15 1 6.6339 0.1171 -1.4433 16 6 7.6523 -1.3335 -2.6330 17 1 7.2788 -2.2164 -3.1303 18 6 8.9324 -1.3201 -2.1210 19 7 9.3873 -0.2447 -1.5159 20 14 10.0205 -2.8295 -2.2869 21 1 10.2126 -3.1455 -3.7251 22 1 11.3392 -2.5603 -1.6593 23 1 9.3749 -3.9820 -1.6087 24 6 5.4139 -0.3927 -3.1466 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.2567 1.8016 1.9563 29 1 2.6614 2.7671 1.4424 30 1 2.8828 1.0776 1.9564 31 1 3.8427 2.2369 -0.6444 32 1 3.9931 0.5051 -0.2616 33 1 5.3247 1.9409 -4.7709 34 1 4.5348 2.9093 -3.4998 35 1 6.4233 2.5267 -1.9761 36 1 7.0459 3.1671 -3.5160 37 1 8.4158 1.2551 -2.7576 38 1 7.5543 0.8475 -4.2608 39 1 10.2878 -0.2355 -1.1555 40 1 4.8951 -1.1720 -2.5884 41 1 5.5569 -0.7155 -4.1779 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594807188.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:13 Heat of formation + Delta-G solvation = -148.201415 kcal Electronic energy + Delta-G solvation = -22932.340851 eV Core-core repulsion = 19552.369251 eV Total energy + Delta-G solvation = -3379.971599 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.50355 -39.26780 -38.21496 -37.00346 -35.17387 -33.98196 -32.66723 -31.83431 -28.83362 -27.51767 -27.00796 -25.16901 -23.31130 -22.74665 -21.00527 -19.74247 -18.86478 -18.13955 -17.96422 -17.70860 -16.99805 -16.53220 -16.29147 -15.78843 -15.40458 -15.12752 -14.80605 -14.44428 -14.33866 -14.20011 -13.80181 -13.76202 -13.63268 -13.29896 -13.22851 -13.13860 -12.84688 -12.69253 -12.67029 -12.53497 -12.49783 -11.95847 -11.90096 -11.83322 -11.76856 -11.49618 -11.05137 -10.75957 -10.70003 -10.38280 -9.70502 -8.05762 -6.19032 -0.73948 1.45318 1.45467 1.52704 1.65986 2.46416 2.56448 2.82432 3.18914 3.21502 3.45820 3.77025 3.83168 4.04644 4.16900 4.27985 4.38289 4.39720 4.48504 4.57401 4.61402 4.64114 4.74703 4.83012 4.83734 4.90790 4.91266 4.98119 5.12205 5.23455 5.32596 5.40440 5.56585 5.67814 5.75419 6.01568 6.07814 6.19143 6.42804 6.91120 7.48498 8.97448 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.005019 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.673356 B = 5577.770576 C = 6023.960998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.410 6.410 3 C 0.084 3.916 4 H 0.088 0.912 5 C -0.163 4.163 6 C -0.620 4.620 7 S 2.612 3.388 8 O -0.981 6.981 9 O -0.982 6.982 10 N -1.000 6.000 11 C 0.120 3.880 12 C -0.127 4.127 13 C -0.106 4.106 14 C 0.037 3.963 15 H 0.009 0.991 16 C -0.538 4.538 17 H 0.052 0.948 18 C 0.021 3.979 19 N -0.911 5.911 20 Si 0.948 3.052 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.275 1.275 24 C 0.138 3.862 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.172 0.828 32 H 0.140 0.860 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.028 0.972 39 H 0.260 0.740 40 H 0.070 0.930 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 7.871 3.678 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.330 6.330 3 C 0.025 3.975 4 H 0.106 0.894 5 C -0.221 4.221 6 C -0.751 4.751 7 S 2.709 3.291 8 O -0.971 6.971 9 O -0.973 6.973 10 N -0.837 5.837 11 C -0.004 4.004 12 C -0.166 4.166 13 C -0.144 4.144 14 C 0.017 3.983 15 H 0.027 0.973 16 C -0.576 4.576 17 H 0.070 0.930 18 C -0.179 4.179 19 N -0.550 5.550 20 Si 0.774 3.226 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.200 1.200 24 C 0.013 3.987 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.116 0.884 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.189 0.811 32 H 0.158 0.842 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.107 7.592 3.249 16.346 hybrid contribution 1.265 -0.725 0.450 1.526 sum -12.842 6.867 3.699 15.025 Atomic orbital electron populations 1.23143 0.79055 1.04514 1.01467 1.88038 1.22034 1.27602 1.95342 1.21974 0.90968 0.85647 0.98897 0.89386 1.22217 1.03647 1.02699 0.93567 1.30747 1.06470 1.14793 1.23132 1.04756 0.72877 0.73496 0.77997 1.93532 1.79780 1.37381 1.86421 1.93516 1.73388 1.57840 1.72520 1.57631 1.35118 1.17064 1.73924 1.21662 0.95271 0.85202 0.98298 1.22014 0.95342 0.98464 1.00776 1.21406 1.00231 0.94607 0.98145 1.18947 0.90687 0.94221 0.94446 0.97316 1.21468 0.99052 0.99948 1.37175 0.92975 1.25591 0.99041 0.98420 0.94803 1.69982 1.17582 1.28887 1.38548 0.85772 0.78049 0.80393 0.78382 1.19860 1.20983 1.20000 1.21444 0.92590 0.83808 1.00855 0.91130 0.93479 0.88353 0.90248 0.89320 0.92026 0.81054 0.84192 0.91035 0.87904 0.92090 0.90067 0.91818 0.95309 0.93042 0.91191 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 10.82 113.37 1.23 1.50 16 2 O -0.41 -11.15 9.68 -148.04 -1.43 -12.58 16 3 C 0.08 1.91 2.72 30.60 0.08 2.00 16 4 H 0.09 1.68 7.79 -2.39 -0.02 1.66 16 5 C -0.16 -2.82 9.53 71.98 0.69 -2.13 16 6 C -0.62 -15.73 5.87 71.98 0.42 -15.30 16 7 S 2.61 85.50 5.27 -56.49 -0.30 85.21 16 8 O -0.98 -39.22 16.25 -125.38 -2.04 -41.26 16 9 O -0.98 -33.43 16.71 -127.65 -2.13 -35.56 16 10 N -1.00 -34.98 3.21 -512.30 -1.65 -36.63 16 11 C 0.12 3.68 6.34 86.51 0.55 4.23 16 12 C -0.13 -4.21 6.10 30.82 0.19 -4.02 16 13 C -0.11 -4.64 4.96 30.62 0.15 -4.49 16 14 C 0.04 1.76 2.25 -11.46 -0.03 1.73 16 15 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 16 C -0.54 -28.76 8.56 25.60 0.22 -28.55 16 17 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 18 C 0.02 1.11 5.30 84.65 0.45 1.56 16 19 N -0.91 -50.35 11.32 21.45 0.24 -50.11 16 20 Si 0.95 42.80 29.54 68.60 2.03 44.82 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 24 C 0.14 5.75 5.54 86.36 0.48 6.23 16 25 H 0.07 0.97 7.87 -2.39 -0.02 0.95 16 26 H 0.05 0.86 8.09 -2.39 -0.02 0.84 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 1.09 7.87 -2.39 -0.02 1.07 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.19 8.14 -2.38 -0.02 1.18 16 31 H 0.17 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.14 3.84 8.14 -2.39 -0.02 3.82 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.10 2.60 7.09 -2.39 -0.02 2.58 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.06 3.20 6.05 -2.39 -0.01 3.18 16 38 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 40 H 0.07 2.97 7.10 -2.39 -0.02 2.95 16 41 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -67.80 338.75 0.14 -67.66 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.99 Total: 15.70 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 4.43 Total: -37.25 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -1.40 Total: -86.74 kcal Atomic # 8 Polarization: -83.80 SS G_CDS: -5.60 Total: -89.40 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 85.50 SS G_CDS: -0.30 Total: 85.21 kcal Total: -67.80 0.14 -67.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807188.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.539 kcal (2) G-P(sol) polarization free energy of solvation -67.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds