Wall clock time and date at job start Fri Apr 10 2020 14:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 120.00006 * 2 1 4 4 H 1.48509 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47514 * 299.99907 * 3 2 1 6 6 H 1.48506 * 109.47101 * 60.00199 * 3 2 1 7 7 C 1.37872 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00213 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47311 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00202 * 180.02562 * 10 9 7 12 12 O 1.21585 * 119.99756 * 354.91610 * 11 10 9 13 13 N 1.34784 * 120.00114 * 174.91571 * 11 10 9 14 14 C 1.47081 * 120.88093 * 184.71462 * 13 11 10 15 15 C 1.53689 * 108.27385 * 128.75487 * 14 13 11 16 16 N 1.46901 * 109.25733 * 54.08316 * 15 14 13 17 17 C 1.38410 * 111.00121 * 172.60566 * 16 15 14 18 18 N 1.32493 * 119.21776 * 124.03132 * 17 16 15 19 19 C 1.32271 * 120.73676 * 179.71812 * 18 17 16 20 20 C 1.38605 * 119.20219 * 0.54455 * 19 18 17 21 21 C 1.38608 * 118.55310 * 359.73278 * 20 19 18 22 22 N 1.32269 * 119.19787 * 359.97438 * 21 20 19 23 23 C 1.46901 * 111.26801 * 296.75470 * 16 15 14 24 24 C 1.47075 * 120.88025 * 4.99610 * 13 11 10 25 25 H 0.96998 * 119.99320 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47104 * 300.00275 * 9 7 2 27 27 H 1.08999 * 109.47179 * 60.00229 * 9 7 2 28 28 H 0.97006 * 120.00256 * 359.97438 * 10 9 7 29 29 H 1.08998 * 109.62579 * 248.52856 * 14 13 11 30 30 H 1.09006 * 109.62742 * 9.10458 * 14 13 11 31 31 H 1.09000 * 109.65165 * 294.08001 * 15 14 13 32 32 H 1.08998 * 109.44391 * 173.96305 * 15 14 13 33 33 H 1.08006 * 120.39876 * 180.25656 * 19 18 17 34 34 H 1.07998 * 120.72289 * 179.70358 * 20 19 18 35 35 H 1.08001 * 120.39550 * 179.97438 * 21 20 19 36 36 H 1.08995 * 109.48989 * 303.14159 * 23 16 15 37 37 H 1.09000 * 109.51088 * 183.07631 * 23 16 15 38 38 H 1.09005 * 109.62937 * 350.89531 * 24 13 11 39 39 H 1.08999 * 109.63355 * 111.47402 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5621 -5.1069 0.0918 13 7 2.6252 -5.9063 -0.1045 14 6 2.1507 -7.2944 -0.2106 15 6 2.8364 -7.9468 -1.4215 16 7 4.2920 -7.7966 -1.2932 17 6 4.9531 -8.5122 -2.2763 18 7 5.8021 -7.8820 -3.0747 19 6 6.4542 -8.5374 -4.0206 20 6 6.2318 -9.8964 -4.1778 21 6 5.3329 -10.5232 -3.3291 22 7 4.7183 -9.8103 -2.3998 23 6 4.6859 -6.3816 -1.3172 24 6 4.0759 -5.6645 -0.1081 25 1 -0.4849 0.8401 0.0004 26 1 0.6246 -2.5570 0.8897 27 1 0.6240 -2.5567 -0.8903 28 1 3.1567 -3.4355 -0.0009 29 1 2.4080 -7.8397 0.6975 30 1 1.0699 -7.3022 -0.3520 31 1 2.5002 -7.4623 -2.3382 32 1 2.5816 -9.0061 -1.4556 33 1 7.1481 -8.0189 -4.6657 34 1 6.7474 -10.4547 -4.9452 35 1 5.1368 -11.5809 -3.4255 36 1 4.3239 -5.9189 -2.2353 37 1 5.7724 -6.3053 -1.2753 38 1 4.2686 -4.5942 -0.1817 39 1 4.5147 -6.0561 0.8096 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000243184959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:38 Heat of formation + Delta-G solvation = 56.160191 kcal Electronic energy + Delta-G solvation = -22794.362772 eV Core-core repulsion = 19352.394507 eV Total energy + Delta-G solvation = -3441.968264 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.51300 -39.82756 -37.92966 -34.63869 -34.27082 -34.04432 -32.40259 -31.21429 -31.08025 -27.83778 -26.53491 -25.20814 -23.58730 -23.38190 -22.47731 -21.12445 -19.17839 -18.63352 -17.74397 -17.44487 -16.10213 -15.85787 -15.78094 -15.57569 -15.22608 -14.78676 -14.74245 -14.57702 -14.17147 -13.80276 -13.69016 -13.15870 -13.04951 -12.38309 -11.99515 -11.73657 -11.63437 -11.42216 -11.32798 -11.25715 -11.10284 -10.90900 -10.89839 -10.50216 -10.27500 -9.46343 -9.38797 -9.32716 -8.75469 -8.71311 -8.39407 -7.73025 -6.14270 -4.20707 0.65138 0.82196 2.79385 3.21361 3.25024 3.32507 3.35790 3.48230 3.85035 3.88815 4.28445 4.32013 4.37812 4.63428 4.77786 4.81131 4.88303 4.94091 5.01872 5.15709 5.21939 5.26735 5.45536 5.45925 5.66213 5.74640 5.82386 5.95641 6.00108 6.36147 6.46311 6.71166 6.94963 7.13253 7.51738 7.54697 7.58655 7.85777 7.86599 8.02999 8.76456 8.90005 9.31532 9.48228 10.96056 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026069 B = 0.003188 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.819304 B = 8780.022098 C = 9538.195453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.729 5.729 11 C 0.698 3.302 12 O -0.597 6.597 13 N -0.644 5.644 14 C 0.138 3.862 15 C 0.054 3.946 16 N -0.458 5.458 17 C 0.496 3.504 18 N -0.551 5.551 19 C 0.174 3.826 20 C -0.267 4.267 21 C 0.174 3.826 22 N -0.532 5.532 23 C 0.057 3.943 24 C 0.115 3.885 25 H 0.265 0.735 26 H 0.026 0.974 27 H 0.024 0.976 28 H 0.385 0.615 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.168 0.832 34 H 0.146 0.854 35 H 0.169 0.831 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.501 -20.005 -7.451 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.383 5.383 11 C 0.400 3.600 12 O -0.476 6.476 13 N -0.384 5.384 14 C 0.014 3.986 15 C -0.073 4.073 16 N -0.177 5.177 17 C 0.141 3.859 18 N -0.271 5.271 19 C 0.007 3.993 20 C -0.291 4.291 21 C 0.006 3.994 22 N -0.250 5.250 23 C -0.071 4.071 24 C -0.009 4.009 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.220 0.780 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.185 0.815 34 H 0.164 0.836 35 H 0.186 0.814 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.997 -19.580 -6.158 24.295 hybrid contribution 1.399 0.713 -1.368 2.082 sum 14.395 -18.867 -7.526 24.897 Atomic orbital electron populations 1.69996 1.06085 1.27135 1.49062 1.24946 0.94914 0.99403 0.94782 0.86361 0.79825 0.82990 0.77722 1.19633 1.20835 1.20810 1.21250 0.93266 0.90416 1.52964 0.91939 1.18998 0.87808 0.81092 0.97623 1.45877 1.10846 1.04399 1.77134 1.16043 0.84733 0.81024 0.78223 1.90862 1.14343 1.83814 1.58562 1.47407 1.05276 1.06022 1.79667 1.21543 1.00169 0.80470 0.96453 1.22780 0.82449 1.02950 0.99130 1.58365 1.08211 1.12124 1.39039 1.21119 0.90462 0.87494 0.86853 1.68423 1.11988 1.40191 1.06497 1.23092 0.92918 0.91494 0.91787 1.22726 1.04042 0.97599 1.04719 1.23103 0.88605 1.00114 0.87561 1.68023 1.28025 1.06484 1.22448 1.22485 1.01847 0.83941 0.98847 1.21735 0.80844 1.00588 0.97746 0.92529 0.95602 0.95841 0.77972 0.90968 0.87832 0.93099 0.87879 0.81514 0.83647 0.81362 0.92169 0.88308 0.88942 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.19 5.43 -5.19 -0.03 7.17 16 10 N -0.73 -15.96 5.46 -66.41 -0.36 -16.33 16 11 C 0.70 14.86 8.31 -86.91 -0.72 14.14 16 12 O -0.60 -15.09 15.83 5.29 0.08 -15.01 16 13 N -0.64 -10.39 3.00 -177.91 -0.53 -10.92 16 14 C 0.14 1.91 6.61 -3.37 -0.02 1.89 16 15 C 0.05 0.67 5.51 -3.47 -0.02 0.65 16 16 N -0.46 -5.74 4.69 -174.82 -0.82 -6.55 16 17 C 0.50 6.13 7.17 -322.80 -2.32 3.82 16 18 N -0.55 -6.31 8.67 -13.93 -0.12 -6.43 16 19 C 0.17 1.41 11.30 -17.23 -0.19 1.22 16 20 C -0.27 -1.73 10.16 -39.31 -0.40 -2.13 16 21 C 0.17 1.36 11.30 -17.23 -0.19 1.17 16 22 N -0.53 -6.02 9.63 -13.93 -0.13 -6.16 16 23 C 0.06 0.69 4.79 -3.70 -0.02 0.67 16 24 C 0.12 1.47 6.59 -3.61 -0.02 1.45 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.39 7.28 5.82 -40.82 -0.24 7.04 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.57 7.09 -51.93 -0.37 1.20 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.10 1.17 7.51 -51.93 -0.39 0.78 16 33 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 35 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 37 H 0.10 1.10 7.63 -51.93 -0.40 0.71 16 38 H 0.09 1.15 5.63 -51.93 -0.29 0.85 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 325.93 15.07 4.91 4.91 Total: -1.00 -35.01 325.93 -10.64 -45.65 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.02 Total: 3.88 kcal Atomic # 6 Polarization: 20.94 SS G_CDS: -4.35 Total: 16.59 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -1.23 Total: -71.94 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.08 Total: -15.01 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.01 -10.64 -45.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243184959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.809 kcal (2) G-P(sol) polarization free energy of solvation -35.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds