Wall clock time and date at job start Fri Apr 10 2020 14:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 120.00006 * 2 1 4 4 H 1.48509 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47514 * 299.99907 * 3 2 1 6 6 H 1.48506 * 109.47101 * 60.00199 * 3 2 1 7 7 C 1.37872 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00213 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47311 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00202 * 180.02562 * 10 9 7 12 12 O 1.21585 * 119.99756 * 354.91610 * 11 10 9 13 13 N 1.34784 * 120.00114 * 174.91571 * 11 10 9 14 14 C 1.47081 * 120.88093 * 184.71462 * 13 11 10 15 15 C 1.53689 * 108.27385 * 128.75487 * 14 13 11 16 16 N 1.46901 * 109.25733 * 54.08316 * 15 14 13 17 17 C 1.38410 * 111.00121 * 172.60566 * 16 15 14 18 18 N 1.32493 * 119.21776 * 124.03132 * 17 16 15 19 19 C 1.32271 * 120.73676 * 179.71812 * 18 17 16 20 20 C 1.38605 * 119.20219 * 0.54455 * 19 18 17 21 21 C 1.38608 * 118.55310 * 359.73278 * 20 19 18 22 22 N 1.32269 * 119.19787 * 359.97438 * 21 20 19 23 23 C 1.46901 * 111.26801 * 296.75470 * 16 15 14 24 24 C 1.47075 * 120.88025 * 4.99610 * 13 11 10 25 25 H 0.96998 * 119.99320 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47104 * 300.00275 * 9 7 2 27 27 H 1.08999 * 109.47179 * 60.00229 * 9 7 2 28 28 H 0.97006 * 120.00256 * 359.97438 * 10 9 7 29 29 H 1.08998 * 109.62579 * 248.52856 * 14 13 11 30 30 H 1.09006 * 109.62742 * 9.10458 * 14 13 11 31 31 H 1.09000 * 109.65165 * 294.08001 * 15 14 13 32 32 H 1.08998 * 109.44391 * 173.96305 * 15 14 13 33 33 H 1.08006 * 120.39876 * 180.25656 * 19 18 17 34 34 H 1.07998 * 120.72289 * 179.70358 * 20 19 18 35 35 H 1.08001 * 120.39550 * 179.97438 * 21 20 19 36 36 H 1.08995 * 109.48989 * 303.14159 * 23 16 15 37 37 H 1.09000 * 109.51088 * 183.07631 * 23 16 15 38 38 H 1.09005 * 109.62937 * 350.89531 * 24 13 11 39 39 H 1.08999 * 109.63355 * 111.47402 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5621 -5.1069 0.0918 13 7 2.6252 -5.9063 -0.1045 14 6 2.1507 -7.2944 -0.2106 15 6 2.8364 -7.9468 -1.4215 16 7 4.2920 -7.7966 -1.2932 17 6 4.9531 -8.5122 -2.2763 18 7 5.8021 -7.8820 -3.0747 19 6 6.4542 -8.5374 -4.0206 20 6 6.2318 -9.8964 -4.1778 21 6 5.3329 -10.5232 -3.3291 22 7 4.7183 -9.8103 -2.3998 23 6 4.6859 -6.3816 -1.3172 24 6 4.0759 -5.6645 -0.1081 25 1 -0.4849 0.8401 0.0004 26 1 0.6246 -2.5570 0.8897 27 1 0.6240 -2.5567 -0.8903 28 1 3.1567 -3.4355 -0.0009 29 1 2.4080 -7.8397 0.6975 30 1 1.0699 -7.3022 -0.3520 31 1 2.5002 -7.4623 -2.3382 32 1 2.5816 -9.0061 -1.4556 33 1 7.1481 -8.0189 -4.6657 34 1 6.7474 -10.4547 -4.9452 35 1 5.1368 -11.5809 -3.4255 36 1 4.3239 -5.9189 -2.2353 37 1 5.7724 -6.3053 -1.2753 38 1 4.2686 -4.5942 -0.1817 39 1 4.5147 -6.0561 0.8096 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243184959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:09:38 Heat of formation + Delta-G solvation = 31.432016 kcal Electronic energy + Delta-G solvation = -22795.435066 eV Core-core repulsion = 19352.394507 eV Total energy + Delta-G solvation = -3443.040558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.29121 -41.24333 -39.16412 -36.24271 -35.88506 -34.77266 -34.35269 -32.27141 -32.01379 -29.52220 -28.01039 -25.99821 -24.97589 -24.27507 -23.98570 -22.44120 -20.74603 -19.90380 -18.64893 -18.45133 -17.90224 -17.34696 -16.71596 -16.64309 -16.53053 -16.36531 -15.72995 -15.49951 -15.29375 -15.19467 -14.85174 -14.53856 -14.33053 -14.06395 -13.68935 -13.39617 -12.86454 -12.75307 -12.74539 -12.49485 -12.41534 -12.17846 -11.94975 -11.84906 -11.44277 -11.29277 -11.16962 -10.81298 -10.17590 -10.10106 -9.58294 -9.37434 -8.27940 -6.44347 -0.02501 0.20475 1.43904 1.45761 1.57999 1.64613 2.06769 2.21247 2.39220 2.79975 3.07176 3.09642 3.19699 3.55151 3.80731 3.81332 3.83853 4.03460 4.09084 4.23029 4.30788 4.36366 4.46174 4.64839 4.70667 4.75946 4.86268 4.93882 5.05117 5.27143 5.29855 5.36974 5.48667 5.53645 5.65757 5.72537 5.84653 6.06336 6.25425 6.67088 7.13042 7.14710 7.25612 7.64984 8.84736 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026069 B = 0.003188 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.819304 B = 8780.022098 C = 9538.195453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.723 5.723 11 C 0.696 3.304 12 O -0.644 6.644 13 N -0.633 5.633 14 C 0.137 3.863 15 C 0.069 3.931 16 N -0.463 5.463 17 C 0.471 3.529 18 N -0.574 5.574 19 C 0.158 3.842 20 C -0.245 4.245 21 C 0.161 3.839 22 N -0.555 5.555 23 C 0.069 3.931 24 C 0.114 3.886 25 H 0.269 0.731 26 H -0.014 1.014 27 H -0.015 1.015 28 H 0.402 0.598 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.033 0.967 32 H 0.115 0.885 33 H 0.197 0.803 34 H 0.185 0.815 35 H 0.202 0.798 36 H 0.042 0.958 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.882 -20.862 -8.397 28.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.378 5.378 11 C 0.397 3.603 12 O -0.526 6.526 13 N -0.372 5.372 14 C 0.014 3.986 15 C -0.059 4.059 16 N -0.183 5.183 17 C 0.115 3.885 18 N -0.295 5.295 19 C -0.008 4.008 20 C -0.268 4.268 21 C -0.005 4.005 22 N -0.273 5.273 23 C -0.059 4.059 24 C -0.009 4.009 25 H 0.078 0.922 26 H 0.004 0.996 27 H 0.003 0.997 28 H 0.240 0.760 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.133 0.867 33 H 0.214 0.786 34 H 0.203 0.797 35 H 0.219 0.781 36 H 0.061 0.939 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 16.476 -20.514 -7.133 27.261 hybrid contribution 0.412 0.782 -1.184 1.477 sum 16.888 -19.732 -8.316 27.271 Atomic orbital electron populations 1.70157 1.08284 1.28500 1.50016 1.26070 0.95789 1.03874 0.93862 0.85090 0.79115 0.77209 0.77661 1.17537 1.20455 1.20456 1.21608 0.94280 0.90390 1.52808 0.89848 1.18430 0.88087 0.83311 0.93954 1.45473 1.10920 1.03798 1.77633 1.16187 0.84680 0.81574 0.77850 1.90824 1.16741 1.84580 1.60482 1.47403 1.06258 1.05628 1.77894 1.21681 0.99466 0.79300 0.98156 1.22567 0.83005 1.03041 0.97238 1.58381 1.07703 1.12012 1.40233 1.21116 0.91569 0.88014 0.87800 1.68385 1.12500 1.41168 1.07399 1.23732 0.93028 0.92663 0.91350 1.23157 1.02410 0.97011 1.04232 1.23792 0.88366 1.01495 0.86859 1.68010 1.29120 1.06277 1.23913 1.22327 1.02288 0.83926 0.97343 1.21985 0.78421 1.01260 0.99259 0.92241 0.99583 0.99713 0.75984 0.89063 0.89566 0.94861 0.86717 0.78631 0.79749 0.78114 0.93943 0.87004 0.88522 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.99 42.61 29.54 68.60 2.03 44.64 16 4 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -30.53 9.28 25.60 0.24 -30.30 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.29 16.18 5.43 85.63 0.47 16.65 16 10 N -0.72 -32.54 5.46 -482.29 -2.63 -35.17 16 11 C 0.70 30.66 8.31 179.05 1.49 32.15 16 12 O -0.64 -34.33 15.83 -3.98 -0.06 -34.40 16 13 N -0.63 -20.61 3.00 -835.05 -2.51 -23.12 16 14 C 0.14 3.84 6.61 86.50 0.57 4.41 16 15 C 0.07 1.70 5.51 86.54 0.48 2.18 16 16 N -0.46 -11.25 4.69 -707.01 -3.31 -14.56 16 17 C 0.47 11.12 7.17 261.48 1.88 13.00 16 18 N -0.57 -12.30 8.67 -197.98 -1.72 -14.02 16 19 C 0.16 2.14 11.30 84.71 0.96 3.09 16 20 C -0.25 -2.29 10.16 22.45 0.23 -2.06 16 21 C 0.16 2.06 11.30 84.72 0.96 3.02 16 22 N -0.55 -11.69 9.63 -197.98 -1.91 -13.60 16 23 C 0.07 1.62 4.79 86.38 0.41 2.03 16 24 C 0.11 2.78 6.59 86.35 0.57 3.35 16 25 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 26 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H 0.40 15.12 5.82 -92.70 -0.54 14.58 16 29 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.09 2.74 7.09 -2.38 -0.02 2.72 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 2.57 7.51 -2.39 -0.02 2.55 16 33 H 0.20 1.28 8.06 -2.91 -0.02 1.25 16 34 H 0.19 0.23 8.06 -2.91 -0.02 0.21 16 35 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.04 1.14 8.13 -2.39 -0.02 1.12 16 37 H 0.11 2.34 7.63 -2.39 -0.02 2.32 16 38 H 0.10 2.28 5.63 -2.38 -0.01 2.26 16 39 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -79.66 325.93 -0.59 -80.25 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.54 Total: 18.28 kcal Atomic # 6 Polarization: 39.49 SS G_CDS: 8.70 Total: 48.19 kcal Atomic # 7 Polarization: -145.17 SS G_CDS: -11.79 Total: -156.96 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.06 Total: -34.40 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -79.66 -0.59 -80.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243184959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.681 kcal (2) G-P(sol) polarization free energy of solvation -79.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds