Wall clock time and date at job start Fri Apr 10 2020 14:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00356 * 2 1 4 4 H 1.48495 * 109.46984 * 275.00407 * 3 2 1 5 5 H 1.48496 * 109.46574 * 35.00331 * 3 2 1 6 6 H 1.48501 * 109.47003 * 155.00399 * 3 2 1 7 7 C 1.38817 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00150 * 174.83773 * 7 2 1 9 9 N 1.36935 * 119.99790 * 354.82941 * 7 2 1 10 10 C 1.47015 * 125.65015 * 354.63058 * 9 7 2 11 11 C 1.54329 * 107.26949 * 179.20441 * 10 9 7 12 12 C 1.55147 * 102.94239 * 337.80788 * 11 10 9 13 13 H 1.09005 * 111.00534 * 277.42130 * 12 11 10 14 14 C 1.53002 * 111.00558 * 153.57960 * 12 11 10 15 15 N 1.46493 * 109.47587 * 181.34975 * 14 12 11 16 16 C 1.34778 * 120.00759 * 179.97438 * 15 14 12 17 17 O 1.21565 * 119.99327 * 359.97438 * 16 15 14 18 18 C 1.47723 * 120.00497 * 179.97438 * 16 15 14 19 19 N 1.33018 * 120.16157 * 6.17039 * 18 16 15 20 20 C 1.31729 * 120.01125 * 180.02562 * 19 18 16 21 21 C 1.38808 * 120.33731 * 0.02562 * 20 19 18 22 22 N 1.32030 * 120.33200 * 359.97121 * 21 20 19 23 23 C 1.32830 * 119.97961 * 359.75680 * 22 21 20 24 24 N 1.38272 * 120.17146 * 180.25008 * 23 22 21 25 25 C 1.47432 * 125.64403 * 174.93961 * 9 7 2 26 26 H 0.97003 * 119.99968 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.88455 * 298.61911 * 10 9 7 28 28 H 1.08993 * 109.88616 * 59.78643 * 10 9 7 29 29 H 1.08997 * 110.71958 * 219.43835 * 11 10 9 30 30 H 1.09003 * 110.87093 * 96.24409 * 11 10 9 31 31 H 1.09007 * 109.47038 * 301.34789 * 14 12 11 32 32 H 1.09000 * 109.47378 * 61.34532 * 14 12 11 33 33 H 0.97004 * 120.00084 * 359.97438 * 15 14 12 34 34 H 1.07991 * 119.83184 * 180.02562 * 20 19 18 35 35 H 1.07999 * 119.83262 * 180.02562 * 21 20 19 36 36 H 0.96996 * 119.99886 * 185.99032 * 24 23 22 37 37 H 0.97003 * 119.99550 * 5.99205 * 24 23 22 38 38 H 1.08998 * 110.36887 * 322.70037 * 25 9 7 39 39 H 1.08996 * 110.36913 * 84.91498 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 -1.3947 5 1 1.5045 2.6197 0.8031 6 1 3.5967 1.4118 0.5916 7 6 2.0102 -1.2022 -0.0005 8 1 3.0869 -1.2041 -0.0847 9 7 1.3296 -2.3857 0.1058 10 6 -0.1155 -2.5253 0.3376 11 6 -0.4315 -4.0357 0.3638 12 6 0.7581 -4.6532 -0.4177 13 1 0.5910 -4.5954 -1.4933 14 6 1.0103 -6.0977 0.0189 15 7 2.1580 -6.6365 -0.7151 16 6 2.5671 -7.9012 -0.4924 17 8 1.9840 -8.5947 0.3180 18 6 3.7240 -8.4446 -1.2330 19 7 4.4396 -7.6541 -2.0283 20 6 5.4704 -8.1419 -2.6877 21 6 5.8159 -9.4800 -2.5582 22 7 5.1150 -10.2766 -1.7725 23 6 4.0765 -9.7971 -1.0974 24 7 3.3428 -10.6267 -0.2694 25 6 1.9257 -3.7309 0.0132 26 1 -0.4850 0.8401 0.0004 27 1 -0.3830 -2.0740 1.2930 28 1 -0.6685 -2.0449 -0.4695 29 1 -1.3743 -4.2412 -0.1430 30 1 -0.4561 -4.4095 1.3874 31 1 1.2189 -6.1228 1.0885 32 1 0.1276 -6.7009 -0.1934 33 1 2.6235 -6.0829 -1.3615 34 1 6.0495 -7.4974 -3.3322 35 1 6.6628 -9.8713 -3.1023 36 1 2.5348 -10.2975 0.1543 37 1 3.6364 -11.5378 -0.1123 38 1 2.7166 -3.7446 -0.7367 39 1 2.3175 -4.0398 0.9823 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028455415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:08:39 Heat of formation + Delta-G solvation = 17.948293 kcal Electronic energy + Delta-G solvation = -22610.937798 eV Core-core repulsion = 19167.312541 eV Total energy + Delta-G solvation = -3443.625257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.25696 -40.48445 -39.23882 -36.81053 -35.81002 -34.71954 -34.24450 -31.77159 -30.84636 -29.76483 -27.48398 -26.50629 -25.13889 -24.38881 -22.36656 -21.66536 -21.29893 -19.50255 -19.02546 -18.61493 -18.53187 -17.23007 -17.04238 -16.69758 -16.44198 -16.11960 -15.89857 -15.52951 -15.47086 -14.89948 -14.59742 -14.31051 -13.98354 -13.81820 -13.44045 -12.99300 -12.84746 -12.76541 -12.64862 -12.61844 -12.01716 -11.95019 -11.85844 -11.63190 -11.55331 -11.45336 -11.34130 -10.71238 -10.19673 -10.15146 -9.08113 -8.88244 -7.82997 -5.20927 -0.46814 0.29344 1.46363 1.48043 1.57397 1.65357 1.97808 2.47012 2.50244 2.84769 3.13117 3.33165 3.37992 3.57702 3.60919 3.83540 4.02018 4.02472 4.15455 4.26709 4.44178 4.50182 4.63582 4.69826 4.78731 4.91750 5.05764 5.08990 5.26938 5.33850 5.42520 5.46343 5.64578 5.81457 5.96607 6.22268 6.23887 6.36151 6.56492 6.96949 7.11022 7.12703 7.78735 8.43257 9.25580 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.003243 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.327389 B = 8632.615495 C = 9585.556673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.978 3.022 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.244 4.244 8 H 0.081 0.919 9 N -0.628 5.628 10 C 0.177 3.823 11 C -0.120 4.120 12 C -0.097 4.097 13 H 0.086 0.914 14 C 0.142 3.858 15 N -0.697 5.697 16 C 0.582 3.418 17 O -0.570 6.570 18 C -0.086 4.086 19 N -0.390 5.390 20 C -0.021 4.021 21 C 0.152 3.848 22 N -0.525 5.525 23 C 0.400 3.600 24 N -0.812 5.812 25 C 0.138 3.862 26 H 0.246 0.754 27 H -0.006 1.006 28 H 0.026 0.974 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.415 0.585 34 H 0.208 0.792 35 H 0.221 0.779 36 H 0.424 0.576 37 H 0.410 0.590 38 H 0.043 0.957 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.181 -21.605 -5.720 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.354 5.354 10 C 0.052 3.948 11 C -0.158 4.158 12 C -0.117 4.117 13 H 0.104 0.896 14 C 0.019 3.981 15 N -0.346 5.346 16 C 0.369 3.631 17 O -0.450 6.450 18 C -0.232 4.232 19 N -0.107 5.107 20 C -0.189 4.189 21 C -0.014 4.014 22 N -0.249 5.249 23 C 0.156 3.844 24 N -0.363 5.363 25 C 0.013 3.987 26 H 0.056 0.944 27 H 0.012 0.988 28 H 0.045 0.955 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.252 0.748 34 H 0.224 0.776 35 H 0.237 0.763 36 H 0.268 0.732 37 H 0.241 0.759 38 H 0.061 0.939 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 8.526 -21.833 -5.012 23.968 hybrid contribution 0.248 1.323 0.088 1.349 sum 8.774 -20.510 -4.923 22.844 Atomic orbital electron populations 1.70181 1.06310 1.25220 1.58150 1.25669 0.96607 1.01059 1.02637 0.85067 0.77740 0.79171 0.77396 1.21121 1.22127 1.19410 1.19464 0.91205 0.83959 1.42672 0.90123 1.44802 1.04765 1.01154 1.84715 1.21002 0.84409 0.92173 0.97190 1.22701 0.97906 0.94774 1.00451 1.22420 0.96155 0.92428 1.00664 0.89561 1.21310 0.88358 0.92386 0.96076 1.45768 1.32598 1.13108 1.43148 1.17742 0.82339 0.81951 0.81070 1.90394 1.58341 1.58866 1.37445 1.21021 1.02825 0.91691 1.07628 1.68058 1.04161 1.36837 1.01650 1.24120 0.96254 0.96473 1.02018 1.24637 0.96198 0.90808 0.89793 1.68310 1.07372 1.38147 1.11031 1.19254 0.89015 0.87972 0.88112 1.43206 1.29290 1.15407 1.48440 1.21731 0.94972 0.84554 0.97430 0.94424 0.98752 0.95537 0.89444 0.90759 0.91508 0.89793 0.74769 0.77580 0.76257 0.73200 0.75920 0.93873 0.96317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.69 10.41 21.65 0.23 -57.47 16 2 C -0.07 -3.84 5.46 84.86 0.46 -3.38 16 3 Si 0.98 46.14 29.56 68.60 2.03 48.17 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.24 -13.87 10.27 84.03 0.86 -13.01 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -32.61 3.39 -691.99 -2.35 -34.96 16 10 C 0.18 8.79 5.42 86.73 0.47 9.26 16 11 C -0.12 -4.21 6.42 31.78 0.20 -4.00 16 12 C -0.10 -3.12 3.10 -9.41 -0.03 -3.15 16 13 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 14 C 0.14 3.85 5.12 86.38 0.44 4.29 16 15 N -0.70 -18.48 5.40 -466.09 -2.51 -21.00 16 16 C 0.58 16.09 7.79 86.75 0.68 16.77 16 17 O -0.57 -17.00 13.66 -3.92 -0.05 -17.05 16 18 C -0.09 -2.14 6.77 42.01 0.28 -1.86 16 19 N -0.39 -8.67 9.72 -183.95 -1.79 -10.46 16 20 C -0.02 -0.30 11.21 84.84 0.95 0.65 16 21 C 0.15 1.85 11.22 84.80 0.95 2.80 16 22 N -0.52 -9.87 10.52 -191.86 -2.02 -11.89 16 23 C 0.40 9.00 7.77 133.50 1.04 10.04 16 24 N -0.81 -15.98 8.89 -54.83 -0.49 -16.47 16 25 C 0.14 5.57 6.41 86.85 0.56 6.12 16 26 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 27 H -0.01 -0.32 7.90 -2.38 -0.02 -0.34 16 28 H 0.03 1.48 6.97 -2.39 -0.02 1.46 16 29 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.07 2.41 8.04 -2.39 -0.02 2.39 16 31 H 0.07 1.91 8.10 -2.38 -0.02 1.89 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.42 10.73 7.70 -92.71 -0.71 10.02 16 34 H 0.21 1.40 8.06 -2.91 -0.02 1.37 16 35 H 0.22 0.49 8.06 -2.91 -0.02 0.47 16 36 H 0.42 9.33 5.40 -93.55 -0.50 8.82 16 37 H 0.41 6.01 8.95 -92.71 -0.83 5.18 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.02 0.77 8.01 -2.39 -0.02 0.75 16 Total: -1.00 -73.36 325.73 -1.03 -74.39 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.94 Total: 22.20 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 6.87 Total: 24.54 kcal Atomic # 7 Polarization: -143.31 SS G_CDS: -8.93 Total: -152.24 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.05 Total: -17.05 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -73.36 -1.03 -74.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028455415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.333 kcal (2) G-P(sol) polarization free energy of solvation -73.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds