Wall clock time and date at job start Fri Apr 10 2020 14:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00011 * 2 1 4 4 H 1.48501 * 109.47014 * 270.00592 * 3 2 1 5 5 H 1.48502 * 109.46652 * 30.00242 * 3 2 1 6 6 H 1.48496 * 109.47178 * 150.00239 * 3 2 1 7 7 C 1.38811 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99707 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64739 * 359.97438 * 9 7 2 11 11 C 1.54909 * 104.83146 * 155.90746 * 10 9 7 12 12 C 1.55157 * 101.58411 * 37.00836 * 11 10 9 13 13 H 1.08997 * 110.72332 * 83.03765 * 12 11 10 14 14 C 1.53005 * 110.72163 * 206.13714 * 12 11 10 15 15 N 1.46502 * 109.47156 * 182.55439 * 14 12 11 16 16 C 1.34776 * 119.99589 * 179.97438 * 15 14 12 17 17 O 1.21564 * 120.00350 * 0.02562 * 16 15 14 18 18 C 1.47733 * 119.99281 * 180.02562 * 16 15 14 19 19 N 1.33015 * 120.16560 * 5.59723 * 18 16 15 20 20 C 1.31729 * 120.00693 * 180.02562 * 19 18 16 21 21 C 1.38798 * 120.34586 * 359.97438 * 20 19 18 22 22 N 1.32028 * 120.32916 * 0.02562 * 21 20 19 23 23 C 1.32836 * 119.98014 * 359.97438 * 22 21 20 24 24 N 1.38270 * 120.16898 * 180.02562 * 23 22 21 25 25 C 1.47317 * 125.61393 * 180.19796 * 9 7 2 26 26 H 0.96998 * 119.99809 * 359.97438 * 1 2 3 27 27 H 1.09003 * 110.36795 * 37.06493 * 10 9 7 28 28 H 1.08996 * 110.45892 * 274.78992 * 10 9 7 29 29 H 1.09006 * 111.00379 * 278.93429 * 11 10 9 30 30 H 1.09001 * 111.03671 * 155.09517 * 11 10 9 31 31 H 1.09007 * 109.46911 * 62.55733 * 14 12 11 32 32 H 1.08995 * 109.46902 * 302.55856 * 14 12 11 33 33 H 0.97000 * 119.99927 * 0.02562 * 15 14 12 34 34 H 1.08005 * 119.82357 * 180.26961 * 20 19 18 35 35 H 1.08001 * 119.83936 * 180.02562 * 21 20 19 36 36 H 0.96998 * 119.99453 * 24.88052 * 24 23 22 37 37 H 0.97002 * 120.00165 * 204.87019 * 24 23 22 38 38 H 1.08998 * 110.06861 * 61.67897 * 25 9 7 39 39 H 1.09002 * 109.85349 * 300.41929 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5331 0.0005 11 6 -0.4020 -3.9323 -0.6112 12 6 0.7784 -4.7525 -0.0270 13 1 0.5455 -5.1007 0.9792 14 6 1.1225 -5.9313 -0.9396 15 7 2.1976 -6.7207 -0.3334 16 6 2.6672 -7.8156 -0.9635 17 8 2.1992 -8.1479 -2.0351 18 6 3.7509 -8.6119 -0.3518 19 7 4.1890 -8.3177 0.8692 20 6 5.1558 -9.0295 1.4114 21 6 5.7221 -10.0883 0.7153 22 7 5.2976 -10.3921 -0.4974 23 6 4.3234 -9.6830 -1.0567 24 7 3.8755 -9.9980 -2.3263 25 6 1.9339 -3.7298 0.0031 26 1 -0.4850 0.8400 0.0004 27 1 -0.5997 -1.7588 -0.6147 28 1 -0.5282 -2.4862 1.0185 29 1 -0.3532 -3.8981 -1.6996 30 1 -1.3591 -4.3332 -0.2775 31 1 1.4496 -5.5565 -1.9096 32 1 0.2409 -6.5585 -1.0710 33 1 2.5707 -6.4557 0.5219 34 1 5.5062 -8.7908 2.4047 35 1 6.5140 -10.6667 1.1679 36 1 3.9817 -10.8995 -2.6682 37 1 3.4549 -9.3176 -2.8749 38 1 2.5283 -3.8685 0.9061 39 1 2.5618 -3.8539 -0.8792 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028455416.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:08:42 Heat of formation + Delta-G solvation = 45.102836 kcal Electronic energy + Delta-G solvation = -22603.272618 eV Core-core repulsion = 19160.824871 eV Total energy + Delta-G solvation = -3442.447747 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45556 -39.39704 -37.64528 -35.87363 -34.52283 -33.93293 -32.48256 -30.34338 -29.58784 -28.21940 -26.09843 -25.18017 -23.93044 -23.28699 -21.12256 -20.07892 -19.72249 -18.59386 -17.88051 -17.78397 -16.83849 -16.38359 -15.72514 -15.63802 -15.20651 -14.93561 -14.66089 -14.34101 -14.09465 -13.68093 -13.41887 -12.85013 -12.49399 -11.95588 -11.89395 -11.76972 -11.69222 -11.49186 -10.94884 -10.84651 -10.79305 -10.51465 -10.28119 -10.10192 -10.00219 -9.79905 -9.54829 -9.36520 -9.05557 -8.64154 -8.34608 -6.82406 -5.64534 -3.06030 0.28277 0.97022 2.61818 2.94021 3.28065 3.40687 3.45548 3.47575 3.61107 3.91427 4.08752 4.37286 4.49666 4.84292 4.96500 4.99985 5.13625 5.25869 5.41562 5.53221 5.69099 5.87579 5.92744 6.05798 6.09978 6.34752 6.37073 6.57308 6.58994 6.71177 6.73661 6.91844 7.02111 7.23278 7.49127 7.52342 7.63486 7.74911 7.86313 8.12459 8.37257 9.23201 9.83876 10.48911 11.39488 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024981 B = 0.003150 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.588444 B = 8886.051714 C = 9466.529962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.077 0.923 14 C 0.130 3.870 15 N -0.699 5.699 16 C 0.581 3.419 17 O -0.547 6.547 18 C -0.040 4.040 19 N -0.375 5.375 20 C -0.016 4.016 21 C 0.129 3.871 22 N -0.506 5.506 23 C 0.406 3.594 24 N -0.821 5.821 25 C 0.141 3.859 26 H 0.252 0.748 27 H 0.107 0.893 28 H 0.012 0.988 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.412 0.588 34 H 0.174 0.826 35 H 0.174 0.826 36 H 0.402 0.598 37 H 0.426 0.574 38 H 0.020 0.980 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.388 -20.707 0.744 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.096 0.904 14 C 0.007 3.993 15 N -0.349 5.349 16 C 0.366 3.634 17 O -0.426 6.426 18 C -0.188 4.188 19 N -0.091 5.091 20 C -0.182 4.182 21 C -0.036 4.036 22 N -0.229 5.229 23 C 0.164 3.836 24 N -0.371 5.371 25 C 0.015 3.985 26 H 0.063 0.937 27 H 0.125 0.875 28 H 0.030 0.970 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.249 0.751 34 H 0.191 0.809 35 H 0.191 0.809 36 H 0.232 0.768 37 H 0.267 0.733 38 H 0.038 0.962 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.908 -20.601 -0.097 21.728 hybrid contribution 0.734 0.772 0.330 1.115 sum 7.642 -19.829 0.233 21.252 Atomic orbital electron populations 1.69797 1.04878 1.24741 1.57739 1.24787 0.95739 0.97711 1.02507 0.86069 0.78516 0.83331 0.77572 1.21604 1.21654 1.20753 1.19085 0.90512 0.82512 1.42925 0.90547 1.44577 1.01955 0.99700 1.86859 1.21926 0.84654 0.92485 0.98208 1.23005 0.95471 0.98604 1.00299 1.22454 0.98364 0.93928 0.98694 0.90449 1.21567 0.89018 0.91691 0.97018 1.45888 1.37964 1.26090 1.24936 1.17486 0.81137 0.80527 0.84221 1.90566 1.59935 1.70254 1.21837 1.21511 1.02314 1.01557 0.93417 1.68120 1.08407 1.24568 1.08042 1.23470 0.96780 0.95401 1.02518 1.23837 0.96665 0.93893 0.89157 1.68238 1.11104 1.30957 1.12585 1.19066 0.87625 0.89485 0.87423 1.42700 1.64972 1.16308 1.13133 1.21388 0.93430 0.85905 0.97816 0.93747 0.87520 0.97014 0.91825 0.92088 0.90901 0.91311 0.75142 0.80889 0.80855 0.76847 0.73349 0.96182 0.95794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.95 10.09 55.49 0.56 -26.39 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.54 3.40 -169.83 -0.58 -16.12 16 10 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 11 C -0.13 -2.48 6.54 -24.58 -0.16 -2.64 16 12 C -0.12 -1.93 2.98 -88.78 -0.26 -2.19 16 13 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 14 C 0.13 1.92 5.00 -4.04 -0.02 1.90 16 15 N -0.70 -9.71 5.42 -61.28 -0.33 -10.04 16 16 C 0.58 8.29 7.78 -12.38 -0.10 8.19 16 17 O -0.55 -8.46 13.82 5.31 0.07 -8.39 16 18 C -0.04 -0.51 6.77 -82.65 -0.56 -1.07 16 19 N -0.37 -4.37 9.71 -9.49 -0.09 -4.46 16 20 C -0.02 -0.14 11.21 -17.39 -0.19 -0.33 16 21 C 0.13 1.00 11.22 -17.26 -0.19 0.81 16 22 N -0.51 -5.33 10.52 -11.99 -0.13 -5.45 16 23 C 0.41 4.80 7.77 -154.87 -1.20 3.59 16 24 N -0.82 -8.36 8.52 31.32 0.27 -8.09 16 25 C 0.14 2.90 6.67 -2.90 -0.02 2.88 16 26 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.11 2.90 5.87 -51.93 -0.30 2.60 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.15 8.01 -51.93 -0.42 0.74 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.41 5.47 7.76 -40.82 -0.32 5.16 16 34 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.40 3.15 8.95 -40.82 -0.37 2.78 16 37 H 0.43 4.70 6.11 -40.82 -0.25 4.45 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.50 7.73 -51.93 -0.40 0.10 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -32.69 325.39 -8.30 -40.99 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -4.98 Total: 7.95 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -2.98 Total: 7.96 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -0.30 Total: -70.56 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.07 Total: -8.39 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.69 -8.30 -40.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028455416.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.091 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds