Wall clock time and date at job start Fri Apr 10 2020 14:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99952 * 2 1 4 4 H 1.48501 * 109.47127 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47469 * 239.99842 * 3 2 1 6 6 H 1.48501 * 109.46773 * 119.99711 * 3 2 1 7 7 C 1.38811 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99905 * 148.21283 * 7 2 1 9 9 N 1.36938 * 120.00021 * 328.20755 * 7 2 1 10 10 C 1.47769 * 125.96169 * 343.52625 * 9 7 2 11 11 C 1.55094 * 104.91519 * 201.58064 * 10 9 7 12 12 C 1.56121 * 101.07910 * 322.93483 * 11 10 9 13 13 H 1.09000 * 112.18091 * 157.73790 * 12 11 10 14 14 C 1.53104 * 106.64526 * 281.14550 * 12 11 10 15 15 N 1.46179 * 109.62613 * 159.76252 * 14 12 11 16 16 C 1.34783 * 120.95651 * 121.19143 * 15 14 12 17 17 O 1.21612 * 119.99937 * 351.57971 * 16 15 14 18 18 C 1.47233 * 119.99641 * 171.58362 * 16 15 14 19 19 C 1.37004 * 127.18843 * 153.43551 * 18 16 15 20 20 N 1.33321 * 106.37271 * 179.97438 * 19 18 16 21 21 N 1.28513 * 109.43692 * 0.02562 * 20 19 18 22 22 N 1.28710 * 110.63984 * 359.74995 * 21 20 19 23 23 H 0.97001 * 126.03826 * 180.26260 * 22 21 20 24 24 C 1.46530 * 118.06465 * 301.50718 * 15 14 12 25 25 C 1.51783 * 110.12967 * 53.46465 * 24 15 14 26 26 C 1.46253 * 125.96122 * 163.21724 * 9 7 2 27 27 H 1.08999 * 105.50006 * 70.59836 * 26 9 7 28 28 H 0.96997 * 119.99659 * 174.42893 * 1 2 3 29 29 H 1.09008 * 110.35276 * 320.43957 * 10 9 7 30 30 H 1.09003 * 110.35258 * 82.61390 * 10 9 7 31 31 H 1.08998 * 111.10164 * 80.89275 * 11 10 9 32 32 H 1.09006 * 111.09951 * 204.98804 * 11 10 9 33 33 H 1.08992 * 109.53569 * 279.94861 * 14 12 11 34 34 H 1.09006 * 109.52959 * 40.16926 * 14 12 11 35 35 H 1.08004 * 126.81399 * 359.93082 * 19 18 16 36 36 H 1.09003 * 109.35864 * 293.26502 * 24 15 14 37 37 H 1.08996 * 109.24882 * 173.60030 * 24 15 14 38 38 H 1.09003 * 108.36062 * 196.93345 * 25 24 15 39 39 H 1.08997 * 108.36442 * 79.83445 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6965 -1.2125 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 2.9688 -1.2720 -0.4933 9 7 1.4797 -2.2994 0.6238 10 6 0.3794 -2.2891 1.6101 11 6 0.5343 -3.6179 2.3948 12 6 0.9890 -4.5864 1.2578 13 1 1.5160 -5.4580 1.6460 14 6 -0.2713 -4.9681 0.4768 15 7 0.1022 -5.4589 -0.8485 16 6 -0.2409 -6.6987 -1.2508 17 8 -0.7331 -7.4802 -0.4597 18 6 -0.0195 -7.1068 -2.6480 19 6 0.1787 -8.3784 -3.1178 20 7 0.3335 -8.2716 -4.4377 21 7 0.2423 -7.0363 -4.7804 22 7 0.0264 -6.2947 -3.7508 23 1 -0.0828 -5.3308 -3.7546 24 6 0.8663 -4.5663 -1.7240 25 6 2.1059 -4.0653 -1.0056 26 6 1.8989 -3.6865 0.4259 27 1 2.8839 -3.7617 0.8866 28 1 -0.4849 -0.8361 -0.0816 29 1 0.4813 -1.4375 2.2829 30 1 -0.5846 -2.2570 1.1024 31 1 1.2997 -3.5313 3.1660 32 1 -0.4171 -3.9343 2.8225 33 1 -0.8114 -5.7472 1.0146 34 1 -0.9098 -4.0918 0.3644 35 1 0.2051 -9.2871 -2.5346 36 1 0.2440 -3.7170 -2.0061 37 1 1.1633 -5.1102 -2.6207 38 1 2.4839 -3.1938 -1.5402 39 1 2.8662 -4.8452 -1.0480 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036758291.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:26 Heat of formation + Delta-G solvation = 101.482670 kcal Electronic energy + Delta-G solvation = -24166.895397 eV Core-core repulsion = 20726.892462 eV Total energy + Delta-G solvation = -3440.002934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.61005 -40.38948 -38.52917 -35.77681 -33.82220 -33.06293 -32.11573 -31.61352 -29.48630 -28.12408 -26.02040 -24.37422 -23.79850 -23.01406 -22.73194 -21.02586 -20.33252 -19.20726 -18.07443 -17.27406 -16.92228 -16.57318 -16.25920 -15.46983 -15.08312 -14.53669 -14.43771 -14.32393 -13.87329 -13.40853 -13.32440 -12.90497 -12.85614 -12.35581 -12.15634 -11.84214 -11.44492 -11.37078 -11.21129 -10.92373 -10.73342 -10.51824 -10.47560 -10.38660 -10.19429 -10.17092 -10.07565 -9.72477 -9.65292 -8.67587 -8.46366 -7.06311 -6.26554 -3.27449 0.73229 2.06104 2.22379 2.62449 2.94750 3.40650 3.46615 3.63224 4.00090 4.35098 4.45445 4.60844 4.77179 4.93236 4.96550 5.02871 5.08983 5.12526 5.20264 5.41646 5.45390 5.58809 5.73615 5.75629 5.87525 5.95645 5.99452 6.12828 6.25314 6.30096 6.35141 6.40899 6.66485 6.69705 6.86214 6.90353 7.18022 7.68146 7.79599 8.04979 8.34596 8.86615 9.66623 10.25569 11.05721 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022147 B = 0.004801 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.953844 B = 5830.798911 C = 6636.965300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.018 4.018 3 Si 1.058 2.942 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.341 4.341 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.140 3.860 11 C -0.132 4.132 12 C -0.106 4.106 13 H 0.083 0.917 14 C 0.121 3.879 15 N -0.595 5.595 16 C 0.593 3.407 17 O -0.521 6.521 18 C -0.055 4.055 19 C 0.025 3.975 20 N -0.271 5.271 21 N -0.052 5.052 22 N -0.374 5.374 23 H 0.455 0.545 24 C 0.103 3.897 25 C -0.132 4.132 26 C 0.169 3.831 27 H 0.013 0.987 28 H 0.267 0.733 29 H 0.050 0.950 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.203 0.797 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.151 -10.794 -1.792 10.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.221 4.221 3 Si 0.888 3.112 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.468 4.468 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.015 3.985 11 C -0.171 4.171 12 C -0.126 4.126 13 H 0.101 0.899 14 C -0.001 4.001 15 N -0.327 5.327 16 C 0.378 3.622 17 O -0.396 6.396 18 C -0.190 4.190 19 C -0.135 4.135 20 N -0.136 5.136 21 N -0.034 5.034 22 N -0.104 5.104 23 H 0.305 0.695 24 C -0.020 4.020 25 C -0.172 4.172 26 C 0.061 3.939 27 H 0.030 0.970 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.220 0.780 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.031 -9.600 -2.858 10.017 hybrid contribution 0.149 -0.874 0.901 1.264 sum 0.118 -10.474 -1.957 10.656 Atomic orbital electron populations 1.70824 1.06827 1.30010 1.46895 1.25681 0.96181 1.01051 0.99226 0.83615 0.75025 0.76267 0.76289 1.21128 1.22003 1.22074 1.19579 1.01895 0.88759 1.36588 0.91784 1.44672 1.41256 0.99958 1.45598 1.21639 0.91632 0.94373 0.90862 1.23080 1.00669 0.96507 0.96814 1.22334 0.95966 0.97838 0.96460 0.89883 1.21700 0.97092 0.99920 0.81352 1.47805 1.53848 1.13346 1.17697 1.16813 0.79007 0.81901 0.84526 1.90837 1.44833 1.50930 1.52957 1.22377 1.14118 0.92345 0.90168 1.23864 1.01281 0.96983 0.91331 1.74970 1.17215 1.08964 1.12451 1.78212 1.15768 0.97643 1.11770 1.46165 1.46900 1.12465 1.04868 0.69481 1.21641 0.94755 0.93234 0.92414 1.21193 0.95464 1.01354 0.99200 1.19518 0.96337 0.86256 0.91749 0.96951 0.92171 0.93196 0.95552 0.91277 0.91412 0.89074 0.90147 0.78032 0.90207 0.91540 0.89199 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.19 13.00 55.49 0.72 -24.47 16 2 C -0.02 -0.48 5.08 -17.43 -0.09 -0.57 16 3 Si 1.06 23.81 30.02 -169.99 -5.10 18.71 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.34 -8.64 9.01 -15.06 -0.14 -8.77 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 N -0.59 -13.12 3.20 -165.71 -0.53 -13.65 16 10 C 0.14 2.91 5.01 -2.24 -0.01 2.90 16 11 C -0.13 -2.11 6.47 -23.95 -0.15 -2.27 16 12 C -0.11 -1.65 3.71 -89.08 -0.33 -1.98 16 13 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 14 C 0.12 1.79 5.49 -4.16 -0.02 1.76 16 15 N -0.60 -8.27 2.94 -175.93 -0.52 -8.79 16 16 C 0.59 8.30 7.64 -12.60 -0.10 8.20 16 17 O -0.52 -8.52 16.47 5.27 0.09 -8.43 16 18 C -0.06 -0.68 6.34 -82.33 -0.52 -1.21 16 19 C 0.02 0.29 11.96 -17.35 -0.21 0.09 16 20 N -0.27 -3.62 12.35 30.47 0.38 -3.25 16 21 N -0.05 -0.67 13.35 60.35 0.81 0.14 16 22 N -0.37 -4.16 5.73 33.31 0.19 -3.97 16 23 H 0.45 4.06 6.94 -190.33 -1.32 2.74 16 24 C 0.10 1.38 5.44 -4.64 -0.03 1.35 16 25 C -0.13 -2.11 5.60 -29.07 -0.16 -2.28 16 26 C 0.17 3.09 2.63 -69.97 -0.18 2.90 16 27 H 0.01 0.25 8.06 -51.93 -0.42 -0.17 16 28 H 0.27 7.38 6.35 -40.82 -0.26 7.12 16 29 H 0.05 1.16 8.10 -51.92 -0.42 0.74 16 30 H 0.03 0.58 5.77 -51.93 -0.30 0.28 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.93 7.98 -51.93 -0.41 0.52 16 33 H 0.09 1.31 7.01 -51.93 -0.36 0.94 16 34 H 0.08 1.28 6.49 -51.93 -0.34 0.95 16 35 H 0.20 1.89 8.06 -52.48 -0.42 1.47 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 0.74 4.59 -51.93 -0.24 0.51 16 38 H 0.09 1.61 6.95 -51.93 -0.36 1.25 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 309.34 15.07 4.66 4.66 Total: -1.00 -30.02 309.34 -7.00 -37.02 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.75 Total: 1.90 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.94 Total: 0.13 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 1.04 Total: -53.99 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.10 Total: 18.71 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.02 -7.00 -37.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036758291.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.500 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds