Wall clock time and date at job start Fri Apr 10 2020 14:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99868 * 2 1 4 4 H 1.48505 * 109.46726 * 269.99869 * 3 2 1 5 5 H 1.48503 * 109.47213 * 29.99693 * 3 2 1 6 6 H 1.48495 * 109.46983 * 149.99866 * 3 2 1 7 7 C 1.38811 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99688 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.47736 * 125.97323 * 359.97438 * 9 7 2 11 11 C 1.55069 * 104.86975 * 157.70217 * 10 9 7 12 12 C 1.55996 * 101.17195 * 36.82566 * 11 10 9 13 13 H 1.09000 * 110.86442 * 204.43320 * 12 11 10 14 14 C 1.52049 * 107.47222 * 83.32842 * 12 11 10 15 15 N 1.46114 * 111.67253 * 208.66900 * 14 12 11 16 16 C 1.34778 * 120.93304 * 232.42520 * 15 14 12 17 17 O 1.21618 * 119.99962 * 5.71245 * 16 15 14 18 18 C 1.47235 * 120.00146 * 185.71678 * 16 15 14 19 19 C 1.37004 * 127.18777 * 204.97414 * 18 16 15 20 20 N 1.33319 * 106.36925 * 179.97438 * 19 18 16 21 21 N 1.28504 * 109.44210 * 359.97438 * 20 19 18 22 22 N 1.28718 * 110.63938 * 0.02562 * 21 20 19 23 23 H 0.96996 * 126.03459 * 180.02562 * 22 21 20 24 24 C 1.47070 * 118.13538 * 52.70029 * 15 14 12 25 25 C 1.53100 * 107.53976 * 300.89594 * 24 15 14 26 26 C 1.46508 * 125.96731 * 179.97438 * 9 7 2 27 27 H 1.08999 * 106.03183 * 291.67584 * 26 9 7 28 28 H 0.97000 * 120.00253 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.35845 * 38.85092 * 10 9 7 30 30 H 1.09002 * 110.45079 * 276.59697 * 10 9 7 31 31 H 1.09002 * 111.07992 * 278.84507 * 11 10 9 32 32 H 1.09007 * 111.07714 * 154.80233 * 11 10 9 33 33 H 1.09001 * 109.04216 * 88.09954 * 14 12 11 34 34 H 1.09001 * 109.03550 * 329.23118 * 14 12 11 35 35 H 1.08007 * 126.81571 * 359.71761 * 19 18 16 36 36 H 1.08997 * 109.79859 * 60.48612 * 24 15 14 37 37 H 1.09002 * 109.79580 * 181.34317 * 24 15 14 38 38 H 1.09000 * 109.01232 * 291.79742 * 25 24 15 39 39 H 1.08995 * 108.81900 * 173.29064 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1438 -2.5418 0.0005 11 6 -0.3953 -3.9624 -0.5681 12 6 0.7998 -4.7515 0.0505 13 1 1.0392 -5.6281 -0.5514 14 6 0.3971 -5.1600 1.4586 15 7 1.5575 -5.2798 2.3384 16 6 1.7689 -6.3998 3.0576 17 8 1.0483 -7.3672 2.9025 18 6 2.8722 -6.4523 4.0311 19 6 3.5262 -7.5685 4.4822 20 7 4.4459 -7.1411 5.3477 21 7 4.3840 -5.8609 5.4401 22 7 3.4601 -5.3948 4.6746 23 1 3.2224 -4.4602 4.5710 24 6 2.4850 -4.1415 2.4218 25 6 3.0223 -3.8799 1.0122 26 6 1.9222 -3.7262 0.0005 27 1 2.3982 -3.8435 -0.9730 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6038 -1.7897 -0.6405 30 1 -0.5348 -2.4647 1.0151 31 1 -0.3443 -3.9635 -1.6570 32 1 -1.3492 -4.3601 -0.2216 33 1 -0.1182 -6.1196 1.4169 34 1 -0.2819 -4.4107 1.8656 35 1 3.3322 -8.5919 4.1969 36 1 1.9569 -3.2610 2.7875 37 1 3.3083 -4.3846 3.0935 38 1 3.6611 -4.7118 0.7156 39 1 3.6184 -2.9675 1.0269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036758292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:29 Heat of formation + Delta-G solvation = 111.886259 kcal Electronic energy + Delta-G solvation = -24123.774900 eV Core-core repulsion = 20684.223099 eV Total energy + Delta-G solvation = -3439.551801 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.59831 -40.29586 -38.40303 -35.63824 -33.79956 -32.90815 -31.98246 -31.56268 -29.51618 -27.97816 -26.06293 -24.53516 -23.74357 -22.99400 -22.63151 -21.03603 -20.25933 -19.02871 -17.87349 -17.17812 -16.59602 -16.50571 -16.22221 -15.37875 -14.96928 -14.62710 -14.47487 -14.22263 -14.06154 -13.27906 -13.07592 -12.87184 -12.35409 -12.26724 -12.00765 -11.70043 -11.37497 -11.31395 -11.23467 -10.94247 -10.84046 -10.73832 -10.37378 -10.34090 -10.18759 -10.03714 -9.81988 -9.69609 -9.64769 -8.77555 -8.61266 -6.96835 -5.81017 -3.21354 0.75639 2.09744 2.24327 2.67706 2.98070 3.29448 3.34867 3.37068 3.99978 4.34673 4.38618 4.61713 4.81022 4.99509 5.04377 5.10243 5.17777 5.24472 5.41146 5.46897 5.53010 5.70287 5.77754 5.91776 5.98421 6.05940 6.10946 6.26650 6.33949 6.37541 6.46351 6.54174 6.70319 6.78947 7.21610 7.35532 7.48573 7.71727 7.84295 8.07818 8.19903 9.06592 9.68621 10.34370 11.24331 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020335 B = 0.004965 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.574929 B = 5637.832908 C = 6640.289436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.154 3.846 11 C -0.142 4.142 12 C -0.105 4.105 13 H 0.075 0.925 14 C 0.124 3.876 15 N -0.594 5.594 16 C 0.592 3.408 17 O -0.523 6.523 18 C -0.054 4.054 19 C 0.024 3.976 20 N -0.271 5.271 21 N -0.054 5.054 22 N -0.376 5.376 23 H 0.456 0.544 24 C 0.097 3.903 25 C -0.134 4.134 26 C 0.171 3.829 27 H 0.016 0.984 28 H 0.253 0.747 29 H 0.101 0.899 30 H 0.013 0.987 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.203 0.797 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.758 -9.849 4.520 11.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.030 3.970 11 C -0.181 4.181 12 C -0.124 4.124 13 H 0.093 0.907 14 C 0.003 3.997 15 N -0.326 5.326 16 C 0.377 3.623 17 O -0.398 6.398 18 C -0.189 4.189 19 C -0.135 4.135 20 N -0.136 5.136 21 N -0.036 5.036 22 N -0.108 5.108 23 H 0.309 0.691 24 C -0.026 4.026 25 C -0.174 4.174 26 C 0.063 3.937 27 H 0.034 0.966 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.031 0.969 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.220 0.780 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.429 -9.886 5.451 11.799 hybrid contribution -0.377 1.360 -0.828 1.636 sum 3.053 -8.527 4.623 10.168 Atomic orbital electron populations 1.69825 1.04899 1.24983 1.56926 1.24759 0.95657 0.97640 1.02152 0.86135 0.78514 0.83477 0.77699 1.21532 1.21652 1.20759 1.18960 0.90415 0.82224 1.43809 0.90475 1.44540 1.01740 0.99146 1.86370 1.21934 0.84687 0.91976 0.98444 1.23310 0.95715 0.98881 1.00184 1.21899 0.97710 0.97752 0.95087 0.90666 1.21366 0.86179 1.02825 0.89369 1.47917 1.26859 1.14822 1.42976 1.16806 0.82281 0.83211 0.80052 1.90837 1.46625 1.34738 1.67612 1.22393 1.03033 0.88740 1.04716 1.23865 0.93704 1.00020 0.95891 1.74961 1.20039 1.01594 1.17047 1.78203 1.07195 1.06119 1.12047 1.46445 1.23967 1.11521 1.28866 0.69134 1.22156 0.91910 0.88969 0.99534 1.21665 0.99661 1.02034 0.94030 1.19529 0.91589 0.86734 0.95865 0.96640 0.93632 0.88105 0.96874 0.91690 0.91885 0.89251 0.90594 0.78041 0.89072 0.91631 0.92723 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.84 10.16 55.49 0.56 -24.28 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.23 -5.60 9.62 -15.06 -0.14 -5.74 16 8 H 0.08 1.85 7.09 -52.49 -0.37 1.47 16 9 N -0.59 -13.20 3.29 -165.48 -0.54 -13.75 16 10 C 0.15 3.33 5.50 -2.27 -0.01 3.32 16 11 C -0.14 -2.39 6.38 -24.03 -0.15 -2.54 16 12 C -0.10 -1.64 3.45 -89.96 -0.31 -1.95 16 13 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 14 C 0.12 1.82 5.64 -4.73 -0.03 1.79 16 15 N -0.59 -8.18 2.93 -175.39 -0.51 -8.70 16 16 C 0.59 8.26 7.66 -12.60 -0.10 8.16 16 17 O -0.52 -8.55 16.42 5.26 0.09 -8.47 16 18 C -0.05 -0.67 6.51 -82.33 -0.54 -1.20 16 19 C 0.02 0.29 11.95 -17.35 -0.21 0.08 16 20 N -0.27 -3.63 12.35 30.47 0.38 -3.25 16 21 N -0.05 -0.69 13.35 60.35 0.81 0.11 16 22 N -0.38 -4.16 5.80 33.31 0.19 -3.97 16 23 H 0.46 4.02 6.47 -190.33 -1.23 2.79 16 24 C 0.10 1.28 5.77 -3.68 -0.02 1.26 16 25 C -0.13 -2.06 5.62 -28.05 -0.16 -2.21 16 26 C 0.17 3.09 2.69 -69.75 -0.19 2.90 16 27 H 0.02 0.31 8.09 -51.93 -0.42 -0.11 16 28 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.10 2.53 6.04 -51.93 -0.31 2.22 16 30 H 0.01 0.30 7.44 -51.93 -0.39 -0.08 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.93 7.94 -51.92 -0.41 0.52 16 33 H 0.09 1.28 6.96 -51.93 -0.36 0.92 16 34 H 0.08 1.17 6.81 -51.93 -0.35 0.82 16 35 H 0.20 1.89 8.06 -52.48 -0.42 1.47 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 0.71 3.87 -51.93 -0.20 0.51 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.40 6.82 -51.93 -0.35 1.05 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -29.19 307.93 -7.02 -36.21 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.65 Total: 2.27 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -1.95 Total: 3.61 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.88 Total: -53.83 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.19 -7.02 -36.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036758292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.101 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds