Wall clock time and date at job start Fri Apr 10 2020 14:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99868 * 2 1 4 4 H 1.48505 * 109.46726 * 269.99869 * 3 2 1 5 5 H 1.48503 * 109.47213 * 29.99693 * 3 2 1 6 6 H 1.48495 * 109.46983 * 149.99866 * 3 2 1 7 7 C 1.38811 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99688 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.47736 * 125.97323 * 359.97438 * 9 7 2 11 11 C 1.55069 * 104.86975 * 157.70217 * 10 9 7 12 12 C 1.55996 * 101.17195 * 36.82566 * 11 10 9 13 13 H 1.09000 * 110.86442 * 204.43320 * 12 11 10 14 14 C 1.52049 * 107.47222 * 83.32842 * 12 11 10 15 15 N 1.46114 * 111.67253 * 208.66900 * 14 12 11 16 16 C 1.34778 * 120.93304 * 232.42520 * 15 14 12 17 17 O 1.21618 * 119.99962 * 5.71245 * 16 15 14 18 18 C 1.47235 * 120.00146 * 185.71678 * 16 15 14 19 19 C 1.37004 * 127.18777 * 204.97414 * 18 16 15 20 20 N 1.33319 * 106.36925 * 179.97438 * 19 18 16 21 21 N 1.28504 * 109.44210 * 359.97438 * 20 19 18 22 22 N 1.28718 * 110.63938 * 0.02562 * 21 20 19 23 23 H 0.96996 * 126.03459 * 180.02562 * 22 21 20 24 24 C 1.47070 * 118.13538 * 52.70029 * 15 14 12 25 25 C 1.53100 * 107.53976 * 300.89594 * 24 15 14 26 26 C 1.46508 * 125.96731 * 179.97438 * 9 7 2 27 27 H 1.08999 * 106.03183 * 291.67584 * 26 9 7 28 28 H 0.97000 * 120.00253 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.35845 * 38.85092 * 10 9 7 30 30 H 1.09002 * 110.45079 * 276.59697 * 10 9 7 31 31 H 1.09002 * 111.07992 * 278.84507 * 11 10 9 32 32 H 1.09007 * 111.07714 * 154.80233 * 11 10 9 33 33 H 1.09001 * 109.04216 * 88.09954 * 14 12 11 34 34 H 1.09001 * 109.03550 * 329.23118 * 14 12 11 35 35 H 1.08007 * 126.81571 * 359.71761 * 19 18 16 36 36 H 1.08997 * 109.79859 * 60.48612 * 24 15 14 37 37 H 1.09002 * 109.79580 * 181.34317 * 24 15 14 38 38 H 1.09000 * 109.01232 * 291.79742 * 25 24 15 39 39 H 1.08995 * 108.81900 * 173.29064 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1438 -2.5418 0.0005 11 6 -0.3953 -3.9624 -0.5681 12 6 0.7998 -4.7515 0.0505 13 1 1.0392 -5.6281 -0.5514 14 6 0.3971 -5.1600 1.4586 15 7 1.5575 -5.2798 2.3384 16 6 1.7689 -6.3998 3.0576 17 8 1.0483 -7.3672 2.9025 18 6 2.8722 -6.4523 4.0311 19 6 3.5262 -7.5685 4.4822 20 7 4.4459 -7.1411 5.3477 21 7 4.3840 -5.8609 5.4401 22 7 3.4601 -5.3948 4.6746 23 1 3.2224 -4.4602 4.5710 24 6 2.4850 -4.1415 2.4218 25 6 3.0223 -3.8799 1.0122 26 6 1.9222 -3.7262 0.0005 27 1 2.3982 -3.8435 -0.9730 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6038 -1.7897 -0.6405 30 1 -0.5348 -2.4647 1.0151 31 1 -0.3443 -3.9635 -1.6570 32 1 -1.3492 -4.3601 -0.2216 33 1 -0.1182 -6.1196 1.4169 34 1 -0.2819 -4.4107 1.8656 35 1 3.3322 -8.5919 4.1969 36 1 1.9569 -3.2610 2.7875 37 1 3.3083 -4.3846 3.0935 38 1 3.6611 -4.7118 0.7156 39 1 3.6184 -2.9675 1.0269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036758292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:28 Heat of formation + Delta-G solvation = 92.406332 kcal Electronic energy + Delta-G solvation = -24124.619613 eV Core-core repulsion = 20684.223099 eV Total energy + Delta-G solvation = -3440.396514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.56247 -41.52097 -39.74057 -36.93819 -35.03116 -34.32819 -33.40317 -32.60286 -31.11002 -29.40529 -27.36727 -26.14891 -24.86483 -24.18692 -23.75184 -22.13906 -21.84702 -20.30162 -19.15546 -18.36095 -18.10921 -17.60957 -17.31788 -16.95256 -16.21015 -16.11249 -15.67253 -15.47221 -15.37789 -14.64129 -14.42600 -14.21609 -13.91781 -13.37219 -13.31878 -13.07270 -13.00241 -12.77526 -12.56851 -12.38349 -12.27866 -11.99285 -11.85974 -11.68264 -11.65264 -11.50333 -11.28220 -11.21996 -10.68653 -10.68009 -9.81193 -8.80504 -7.75019 -5.15333 -0.22737 1.11962 1.30290 1.48661 1.50118 1.57261 1.59832 1.93203 2.51078 2.98533 3.35836 3.42600 3.56884 3.63292 3.77950 3.85526 3.93055 3.99164 4.07854 4.14417 4.32144 4.40042 4.60881 4.68401 4.72858 4.81947 4.86018 4.91316 5.04765 5.14209 5.21909 5.35369 5.41895 5.50659 5.54248 5.69303 5.86917 6.09833 6.33795 6.73253 7.11571 7.14879 7.83721 8.49004 9.28759 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020335 B = 0.004965 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.574929 B = 5637.832908 C = 6640.289436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.062 4.062 3 Si 0.968 3.032 4 H -0.293 1.293 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.223 4.223 8 H 0.084 0.916 9 N -0.609 5.609 10 C 0.158 3.842 11 C -0.129 4.129 12 C -0.094 4.094 13 H 0.096 0.904 14 C 0.129 3.871 15 N -0.593 5.593 16 C 0.600 3.400 17 O -0.545 6.545 18 C -0.061 4.061 19 C 0.032 3.968 20 N -0.290 5.290 21 N -0.061 5.061 22 N -0.362 5.362 23 H 0.464 0.536 24 C 0.106 3.894 25 C -0.130 4.130 26 C 0.166 3.834 27 H 0.003 0.997 28 H 0.244 0.756 29 H 0.062 0.938 30 H -0.006 1.006 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.225 0.775 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 -11.421 5.062 13.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.798 3.202 4 H -0.220 1.220 5 H -0.227 1.227 6 H -0.193 1.193 7 C -0.352 4.352 8 H 0.101 0.899 9 N -0.334 5.334 10 C 0.033 3.967 11 C -0.168 4.168 12 C -0.114 4.114 13 H 0.115 0.885 14 C 0.007 3.993 15 N -0.324 5.324 16 C 0.386 3.614 17 O -0.421 6.421 18 C -0.196 4.196 19 C -0.127 4.127 20 N -0.155 5.155 21 N -0.042 5.042 22 N -0.096 5.096 23 H 0.319 0.681 24 C -0.017 4.017 25 C -0.170 4.170 26 C 0.059 3.941 27 H 0.021 0.979 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.012 0.988 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.242 0.758 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.607 -11.475 6.002 13.745 hybrid contribution -0.709 1.804 -1.017 2.189 sum 3.898 -9.671 4.985 11.557 Atomic orbital electron populations 1.70064 1.06084 1.24729 1.58853 1.25446 0.96348 1.00409 1.03277 0.85230 0.77819 0.80034 0.77159 1.22010 1.22664 1.19298 1.19296 0.90934 0.83276 1.41695 0.89857 1.44745 1.02252 1.00195 1.86196 1.21693 0.84351 0.93922 0.96772 1.23165 0.97613 0.95922 1.00053 1.21856 0.95941 0.97511 0.96090 0.88538 1.21251 0.86404 1.02896 0.88727 1.47868 1.26655 1.14980 1.42872 1.16836 0.82132 0.82605 0.79800 1.90833 1.47519 1.35468 1.68310 1.22182 1.03095 0.89259 1.05031 1.24292 0.92667 1.00980 0.94770 1.74978 1.20864 1.01800 1.17849 1.78189 1.07523 1.06246 1.12277 1.46413 1.23259 1.11846 1.28103 0.68087 1.22076 0.92391 0.88511 0.98707 1.21552 0.98650 1.02290 0.94528 1.19745 0.92858 0.85342 0.96136 0.97936 0.94645 0.92000 0.98770 0.91664 0.89397 0.88318 0.91618 0.75845 0.90243 0.88971 0.90794 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.96 10.16 21.65 0.22 -52.74 16 2 C -0.06 -3.24 5.49 84.86 0.47 -2.78 16 3 Si 0.97 42.82 29.55 68.60 2.03 44.85 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.22 -11.10 9.62 84.03 0.81 -10.29 16 8 H 0.08 3.95 7.09 -2.91 -0.02 3.93 16 9 N -0.61 -27.20 3.29 -677.45 -2.23 -29.43 16 10 C 0.16 6.93 5.50 86.85 0.48 7.41 16 11 C -0.13 -4.19 6.38 32.34 0.21 -3.98 16 12 C -0.09 -2.77 3.45 -10.36 -0.04 -2.80 16 13 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 14 C 0.13 3.51 5.64 86.14 0.49 4.00 16 15 N -0.59 -14.91 2.93 -827.07 -2.43 -17.34 16 16 C 0.60 15.14 7.66 86.61 0.66 15.81 16 17 O -0.54 -16.39 16.42 -4.09 -0.07 -16.45 16 18 C -0.06 -1.33 6.51 40.41 0.26 -1.07 16 19 C 0.03 0.68 11.95 84.18 1.01 1.69 16 20 N -0.29 -7.09 12.35 -57.50 -0.71 -7.80 16 21 N -0.06 -1.42 13.35 37.02 0.49 -0.93 16 22 N -0.36 -7.09 5.80 -48.52 -0.28 -7.38 16 23 H 0.46 7.02 6.47 -219.90 -1.42 5.60 16 24 C 0.11 2.56 5.77 86.30 0.50 3.06 16 25 C -0.13 -3.75 5.62 29.74 0.17 -3.58 16 26 C 0.17 5.79 2.69 43.81 0.12 5.91 16 27 H 0.00 0.11 8.09 -2.39 -0.02 0.09 16 28 H 0.24 13.49 8.31 -92.71 -0.77 12.72 16 29 H 0.06 3.23 6.04 -2.39 -0.01 3.22 16 30 H -0.01 -0.27 7.44 -2.39 -0.02 -0.28 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.09 2.43 7.94 -2.38 -0.02 2.41 16 33 H 0.10 2.56 6.96 -2.39 -0.02 2.54 16 34 H 0.07 1.95 6.81 -2.39 -0.02 1.93 16 35 H 0.23 3.50 8.06 -2.91 -0.02 3.48 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.09 1.73 3.87 -2.39 -0.01 1.72 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.07 2.31 6.82 -2.39 -0.02 2.29 16 Total: -1.00 -63.08 307.93 1.83 -61.26 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -0.32 Total: 12.59 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 5.12 Total: 13.37 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -4.93 Total: -115.60 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.07 Total: -16.45 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -63.08 1.83 -61.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036758292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.664 kcal (2) G-P(sol) polarization free energy of solvation -63.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds