Wall clock time and date at job start Fri Apr 10 2020 14:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00377 * 2 1 4 4 H 1.48493 * 109.47472 * 274.99269 * 3 2 1 5 5 H 1.48511 * 109.46660 * 34.98909 * 3 2 1 6 6 H 1.48497 * 109.47223 * 154.98227 * 3 2 1 7 7 C 1.38817 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00361 * 185.80556 * 7 2 1 9 9 N 1.36940 * 119.99516 * 5.79810 * 7 2 1 10 10 C 1.48151 * 126.40861 * 353.05417 * 9 7 2 11 11 C 1.55288 * 107.04495 * 184.92446 * 10 9 7 12 12 C 1.53745 * 101.84213 * 22.48160 * 11 10 9 13 13 H 1.08997 * 111.31192 * 79.84997 * 12 11 10 14 14 C 1.52242 * 114.74118 * 207.25069 * 12 11 10 15 15 N 1.47717 * 106.36981 * 169.56871 * 14 12 11 16 16 C 1.34770 * 119.68492 * 127.91745 * 15 14 12 17 17 O 1.21618 * 119.99831 * 353.08316 * 16 15 14 18 18 C 1.47236 * 119.99903 * 173.08631 * 16 15 14 19 19 C 1.37008 * 127.18870 * 158.68619 * 18 16 15 20 20 N 1.33314 * 106.37288 * 179.97438 * 19 18 16 21 21 N 1.28516 * 109.43848 * 359.97438 * 20 19 18 22 22 N 1.28708 * 110.63672 * 359.75339 * 21 20 19 23 23 H 0.97008 * 126.03454 * 180.25928 * 22 21 20 24 24 C 1.46597 * 120.63407 * 307.94278 * 15 14 12 25 25 C 1.53964 * 110.57354 * 47.82008 * 24 15 14 26 26 C 1.45471 * 126.40198 * 172.74818 * 9 7 2 27 27 H 1.08997 * 109.25767 * 266.19437 * 26 9 7 28 28 H 0.97004 * 119.99896 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.92309 * 304.27313 * 10 9 7 30 30 H 1.09002 * 109.92085 * 65.57896 * 10 9 7 31 31 H 1.09005 * 110.95938 * 140.61706 * 11 10 9 32 32 H 1.08995 * 110.95562 * 264.34247 * 11 10 9 33 33 H 1.09007 * 110.06651 * 288.77706 * 14 12 11 34 34 H 1.08997 * 110.06853 * 50.35326 * 14 12 11 35 35 H 1.08006 * 126.81416 * 359.92682 * 19 18 16 36 36 H 1.08994 * 109.26046 * 168.10601 * 24 15 14 37 37 H 1.09005 * 109.25791 * 287.57964 * 24 15 14 38 38 H 1.08999 * 109.88046 * 68.41233 * 25 24 15 39 39 H 1.09004 * 109.87978 * 189.41473 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4120 0.5921 7 6 2.0103 -1.2022 -0.0005 8 1 3.0861 -1.2046 0.0941 9 7 1.3308 -2.3850 -0.1209 10 6 -0.1405 -2.5585 -0.1142 11 6 -0.4189 -4.0857 -0.1520 12 6 0.8967 -4.6600 0.3987 13 1 0.9316 -4.5978 1.4863 14 6 1.2299 -6.0650 -0.0837 15 7 2.6205 -6.3309 0.3375 16 6 2.9058 -7.4523 1.0284 17 8 2.0064 -8.1759 1.4114 18 6 4.3062 -7.8013 1.3197 19 6 4.7643 -8.6313 2.3089 20 7 6.0925 -8.6521 2.1968 21 7 6.4510 -7.8996 1.2186 22 7 5.4232 -7.3692 0.6540 23 1 5.4371 -6.7678 -0.1070 24 6 3.6933 -5.3864 0.0117 25 6 3.2713 -3.9472 0.3597 26 6 1.9186 -3.7054 -0.2854 27 1 1.9786 -3.9424 -1.3476 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5613 -2.1267 0.7938 30 1 -0.5749 -2.0801 -0.9921 31 1 -1.2579 -4.3452 0.4938 32 1 -0.5952 -4.4247 -1.1727 33 1 0.5553 -6.7878 0.3754 34 1 1.1517 -6.1160 -1.1697 35 1 4.1677 -9.1625 3.0358 36 1 4.5862 -5.6466 0.5799 37 1 3.9148 -5.4476 -1.0539 38 1 3.1959 -3.8344 1.4412 39 1 4.0009 -3.2409 -0.0365 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036758294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:10:34 Heat of formation + Delta-G solvation = 110.542319 kcal Electronic energy + Delta-G solvation = -23777.141145 eV Core-core repulsion = 20337.531067 eV Total energy + Delta-G solvation = -3439.610078 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.69094 -40.36965 -38.41629 -35.86369 -33.90044 -32.79263 -31.83526 -31.66731 -29.71560 -28.32839 -25.66588 -24.52375 -23.54633 -22.87833 -22.46697 -21.07715 -20.14287 -19.73294 -18.19212 -17.28028 -16.67807 -16.40443 -16.20290 -15.39614 -15.04993 -14.61571 -14.53956 -14.16457 -13.90153 -13.53765 -13.24590 -12.84637 -12.69959 -12.40403 -11.85999 -11.72066 -11.59532 -11.50141 -11.15523 -10.94410 -10.88434 -10.82623 -10.45945 -10.21290 -10.13769 -10.01521 -9.79312 -9.75232 -9.62813 -8.87514 -8.70996 -6.94778 -5.83486 -3.16834 0.65555 2.01833 2.14732 2.55153 2.86578 3.32540 3.37663 3.40206 3.89523 4.28486 4.38925 4.45679 4.70321 4.82166 4.89883 4.92568 5.14315 5.15326 5.38013 5.40264 5.59890 5.68464 5.70868 5.80382 5.90874 5.94810 6.03902 6.09325 6.24753 6.29767 6.43405 6.47380 6.61164 6.88596 7.02735 7.44690 7.50287 7.70126 7.72621 7.99302 8.12953 9.07791 9.71536 10.39101 11.29515 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023431 B = 0.004275 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.701914 B = 6547.787292 C = 7494.956839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.126 4.126 13 H 0.082 0.918 14 C 0.127 3.873 15 N -0.600 5.600 16 C 0.591 3.409 17 O -0.518 6.518 18 C -0.058 4.058 19 C 0.028 3.972 20 N -0.270 5.270 21 N -0.053 5.053 22 N -0.377 5.377 23 H 0.454 0.546 24 C 0.092 3.908 25 C -0.128 4.128 26 C 0.168 3.832 27 H 0.023 0.977 28 H 0.253 0.747 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.204 0.796 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.779 -13.329 -0.938 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.146 4.146 13 H 0.100 0.900 14 C 0.006 3.994 15 N -0.333 5.333 16 C 0.376 3.624 17 O -0.392 6.392 18 C -0.193 4.193 19 C -0.131 4.131 20 N -0.135 5.135 21 N -0.035 5.035 22 N -0.109 5.109 23 H 0.306 0.694 24 C -0.032 4.032 25 C -0.167 4.167 26 C 0.060 3.940 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.221 0.779 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.742 -13.644 -0.649 15.233 hybrid contribution -0.604 1.571 -0.498 1.755 sum 6.138 -12.073 -1.147 13.593 Atomic orbital electron populations 1.69945 1.04967 1.25237 1.56251 1.24818 0.95658 0.97696 1.01866 0.86155 0.78694 0.83685 0.77545 1.21557 1.21705 1.20641 1.18972 0.90803 0.82345 1.43950 0.90404 1.44186 1.01649 1.00410 1.85573 1.21539 0.83918 0.88083 1.01186 1.22722 0.95553 0.99453 0.99724 1.22726 0.98108 0.93025 1.00773 0.89950 1.21771 0.80026 0.97968 0.99603 1.48252 1.10453 1.20059 1.54520 1.16882 0.85321 0.81650 0.78574 1.90850 1.45577 1.51286 1.51519 1.22409 0.89649 1.06105 1.01093 1.23902 0.91391 0.98700 0.99121 1.74981 1.12121 1.14838 1.11587 1.78207 1.12076 1.07810 1.05373 1.46381 1.04373 1.34143 1.25997 0.69384 1.22206 0.89113 0.91372 1.00552 1.21930 0.99998 0.92530 1.02249 1.20731 0.90647 0.87212 0.95447 0.95965 0.93630 0.93228 0.93801 0.91877 0.92188 0.88622 0.90656 0.77944 0.90963 0.90697 0.90990 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.87 10.49 55.49 0.58 -25.28 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 3 Si 0.91 21.16 29.56 -169.99 -5.02 16.13 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.23 -6.01 9.89 -15.06 -0.15 -6.16 16 8 H 0.08 1.92 7.18 -52.49 -0.38 1.54 16 9 N -0.59 -13.83 3.35 -162.74 -0.54 -14.38 16 10 C 0.18 4.00 5.43 -1.92 -0.01 3.99 16 11 C -0.14 -2.29 6.53 -25.13 -0.16 -2.45 16 12 C -0.13 -2.00 2.86 -89.19 -0.26 -2.25 16 13 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 14 C 0.13 1.65 5.97 -3.76 -0.02 1.63 16 15 N -0.60 -7.25 3.00 -173.82 -0.52 -7.77 16 16 C 0.59 7.55 7.63 -12.61 -0.10 7.45 16 17 O -0.52 -8.00 16.35 5.26 0.09 -7.92 16 18 C -0.06 -0.65 6.44 -82.33 -0.53 -1.18 16 19 C 0.03 0.32 11.93 -17.35 -0.21 0.11 16 20 N -0.27 -3.40 12.35 30.47 0.38 -3.03 16 21 N -0.05 -0.62 13.35 60.35 0.81 0.19 16 22 N -0.38 -3.61 5.75 33.31 0.19 -3.42 16 23 H 0.45 3.04 6.38 -190.33 -1.21 1.82 16 24 C 0.09 0.96 5.04 -3.49 -0.02 0.95 16 25 C -0.13 -1.88 5.45 -26.84 -0.15 -2.02 16 26 C 0.17 3.00 2.59 -67.67 -0.18 2.82 16 27 H 0.02 0.41 7.94 -51.93 -0.41 0.00 16 28 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.05 1.26 7.46 -51.93 -0.39 0.87 16 30 H 0.04 1.10 7.58 -51.93 -0.39 0.71 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 33 H 0.10 1.27 6.98 -51.92 -0.36 0.90 16 34 H 0.08 0.88 8.08 -51.93 -0.42 0.47 16 35 H 0.20 1.80 8.06 -52.48 -0.42 1.38 16 36 H 0.07 0.65 4.39 -51.93 -0.23 0.42 16 37 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 38 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 39 H 0.08 1.21 7.63 -51.93 -0.40 0.81 16 LS Contribution 311.39 15.07 4.69 4.69 Total: -1.00 -31.20 311.39 -7.08 -38.28 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.86 Total: -0.19 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -1.87 Total: 2.69 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.89 Total: -53.69 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.09 Total: -7.92 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.20 -7.08 -38.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036758294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.825 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds